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2020 – today
- 2023
[j80]Claudio Lo Giudice
, Federico Zambelli, Matteo Chiara, Giulio Pavesi, Marco Antonio Tangaro, Ernesto Picardi, Graziano Pesole:
UTRdb 2.0: a comprehensive, expert curated catalog of eukaryotic mRNAs untranslated regions. Nucleic Acids Res. 51(D1): 337-344 (2023)- 2022
- [j79]Bachir Balech, Anna Sandionigi, Marinella Marzano, Graziano Pesole, Monica Santamaria:
MetaCOXI: an integrated collection of metazoan mitochondrial cytochrome oxidase subunit-I DNA sequences. Database J. Biol. Databases Curation 2022(2022) (2022) - [c12]Marco Antonio Tangaro, Marica Antonacci, Pietro Mandreoli, Daniele Colombo, Nadina Foggetti, Giacinto Donvito, Graziano Pesole, Federico Zambelli:
The Laniakea Dashboard and Storage Encryption Components: A Foundation for Developing On-Demand Cloud Services for Life Science. ICWE Workshops 2022: 179-191 - 2021
- [j78]Matteo Chiara, Anna Maria D'Erchia, Carmela Gissi, Caterina Manzari, Antonio Parisi, Nicoletta Resta, Federico Zambelli, Ernesto Picardi, Giulio Pavesi, David Stephen Horner, Graziano Pesole:
Next generation sequencing of SARS-CoV-2 genomes: challenges, applications and opportunities. Briefings Bioinform. 22(2): 616-630 (2021) - [j77]Matteo Chiara, Federico Zambelli, Marco Antonio Tangaro, Pietro Mandreoli, David Stephen Horner, Graziano Pesole:
CorGAT: a tool for the functional annotation of SARS-CoV-2 genomes. Bioinform. 36(22-23): 5522-5523 (2021) - [j76]Matteo Chiara, Pietro Mandreoli, Marco Antonio Tangaro, Anna Maria D'Erchia, Sandro Sorrentino, Cinzia Forleo, David Stephen Horner, Federico Zambelli, Graziano Pesole:
VINYL: Variant prIoritizatioN bY survivaL analysis. Bioinform. 36(24): 5590-5599 (2021) - [j75]Marco Antonio Tangaro, Giuseppe Defazio, Bruno Fosso, Vito Flavio Licciulli, Giorgio Grillo, Giacinto Donvito, Enrico Lavezzo, Giacomo Baruzzo, Graziano Pesole, Monica Santamaria:
ITSoneWB: profiling global taxonomic diversity of eukaryotic communities on Galaxy. Bioinform. 37(22): 4253-4254 (2021) - [j74]Marco Antonio Tangaro, Pietro Mandreoli, Matteo Chiara, Giacinto Donvito, Marica Antonacci, Antonio Parisi, Angelica Bianco, Angelo Romano, Daniela Manila Bianchi, Davide Cangelosi, Paolo Uva, Ivan Molineris, Vladimir Nosi, Raffaele A. Calogero, Luca Alessandrì, Elena Pedrini, Marina Mordenti, Emanuele Bonetti, Luca Sangiorgi, Graziano Pesole, Federico Zambelli:
Laniakea@ReCaS: exploring the potential of customisable Galaxy on-demand instances as a cloud-based service. BMC Bioinform. 22-S(15): 544 (2021) - [j73]Luigi Mansi, Marco Antonio Tangaro, Claudio Lo Giudice, Tiziano Flati, Eli Kopel, Amos Avraham Schaffer, Tiziana Castrignanò, Giovanni Chillemi, Graziano Pesole, Ernesto Picardi:
REDIportal: millions of novel A-to-I RNA editing events from thousands of RNAseq experiments. Nucleic Acids Res. 49(Database-Issue): D1012-D1019 (2021) - [i1]Robert M. Waterhouse, Anne-Françoise Adam-Blondon, Donat Agosti, Petr Baldrian, Bachir Balech, Erwan Le Corre, Robert P. Davey, Henrik Lantz, Graziano Pesole, Christian Quast, Frank Oliver Glöckner, Niels Raes, Anna Sandionigi, Monica Santamaria, Wouter Addink, Jiri Vohradsky, Amandine Nunes-Jorge, Nils Peder Willassen, Jerry Lanfear:
Recommendations for connecting molecular sequence and biodiversity research infrastructures through ELIXIR. F1000Research 10: 1238 (2021) - 2020
- [j72]Matteo Chiara, Federico Zambelli, Ernesto Picardi, David Stephen Horner, Graziano Pesole:
Critical assessment of bioinformatics methods for the characterization of pathological repeat expansions with single-molecule sequencing data. Briefings Bioinform. 21(6): 1971-1986 (2020) - [j71]Tiziana Castrignanò, Silvia Gioiosa, Tiziano Flati, Mirko Cestari, Ernesto Picardi, Matteo Chiara, Maddalena Fratelli, Stefano Amente, Marco Cirilli, Marco Antonio Tangaro, Giovanni Chillemi, Graziano Pesole, Federico Zambelli:
ELIXIR-IT HPC@CINECA: high performance computing resources for the bioinformatics community. BMC Bioinform. 21-S(10): 352 (2020) - [j70]Tiziano Flati, Silvia Gioiosa, Nicola Spallanzani, Ilario Tagliaferri, Maria Angela Diroma, Graziano Pesole, Giovanni Chillemi, Ernesto Picardi, Tiziana Castrignanò:
HPC-REDItools: a novel HPC-aware tool for improved large scale RNA-editing analysis. BMC Bioinform. 21-S(10): 353 (2020)
2010 – 2019
- 2019
- [j69]Maria Angela Diroma, Loredana Ciaccia, Graziano Pesole, Ernesto Picardi:
Elucidating the editome: bioinformatics approaches for RNA editing detection. Briefings Bioinform. 20(2): 436-447 (2019) - 2018
- [j68]Bruno Fosso, Graziano Pesole, Francesc Rosselló, Gabriel Valiente:
Unbiased Taxonomic Annotation of Metagenomic Samples. J. Comput. Biol. 25(3): 348-360 (2018) - [j67]Monica Santamaria, Bruno Fosso, Flavio Licciulli, Bachir Balech, Ilaria Larini, Giorgio Grillo, Giorgio De Caro, Sabino Liuni, Graziano Pesole:
ITSoneDB: a comprehensive collection of eukaryotic ribosomal RNA Internal Transcribed Spacer 1 (ITS1) sequences. Nucleic Acids Res. 46(Database-Issue): D127-D132 (2018) - 2017
- [j66]Bruno Fosso, Monica Santamaria, Mattia D'Antonio, Domenica Lovero, Giacomo Corrado, Enrico Vizza, N. Pássaro, Anna Rosa Garbuglia, M. R. Capobianchi, Marco Crescenzi, Gabriel Valiente, Graziano Pesole:
MetaShot: an accurate workflow for taxon classification of host-associated microbiome from shotgun metagenomic data. Bioinform. 33(11): 1730-1732 (2017) - [j65]Ernesto Picardi, Anna Maria D'Erchia, Claudio Lo Giudice, Graziano Pesole:
REDIportal: a comprehensive database of A-to-I RNA editing events in humans. Nucleic Acids Res. 45(Database-Issue): D750-D757 (2017) - [c11]Bruno Fosso, Graziano Pesole, Francesc Rosselló, Gabriel Valiente:
Unbiased Taxonomic Annotation of Metagenomic Samples. ISBRA 2017: 162-173 - 2015
- [j64]Bachir Balech, Saverio Vicario, Giacinto Donvito, Alfonso Monaco, Pasquale Notarangelo, Graziano Pesole:
MSA-PAD: DNA multiple sequence alignment framework based on PFAM accessed domain information. Bioinform. 31(15): 2571-2573 (2015) - [j63]Bruno Fosso, Monica Santamaria, Marinella Marzano, Daniel Alonso-Alemany, Gabriel Valiente, Giacinto Donvito, Alfonso Monaco, Pasquale Notarangelo, Graziano Pesole:
BioMaS: a modular pipeline for Bioinformatic analysis of Metagenomic AmpliconS. BMC Bioinform. 16: 203:1-203:11 (2015) - 2014
- [j62]Claudia Calabrese, Domenico Simone, Maria Angela Diroma, Mariangela Santorsola, Cristiano Guttà, Giuseppe Gasparre, Ernesto Picardi, Graziano Pesole, Marcella Attimonelli:
MToolBox: a highly automated pipeline for heteroplasmy annotation and prioritization analysis of human mitochondrial variants in high-throughput sequencing. Bioinform. 30(21): 3115-3117 (2014) - [j61]Vitoantonio Bevilacqua, Nicola Pietroleonardo, Ely Ignazio Giannino, Fabio Stroppa, Domenico Simone, Graziano Pesole, Ernesto Picardi:
EasyCluster2: an improved tool for clustering and assembling long transcriptome reads. BMC Bioinform. 15(S-15): S7 (2014) - [c10]Mattia D'Antonio, Paolo D'Onorio De Meo, Tiziana Castrignanò, Giovanni Erbacci, Matteo Pallocca, Graziano Pesole:
ODESSA: A high performance analysis pipeline for Ultra Deep targeted Exome Sequencing data. HPCS 2014: 608-615 - 2013
- [j60]Federico Zambelli, Graziano Pesole, Giulio Pavesi:
Motif discovery and transcription factor binding sites before and after the next-generation sequencing era. Briefings Bioinform. 14(2): 225-237 (2013) - [j59]Ernesto Picardi, Graziano Pesole:
REDItools: high-throughput RNA editing detection made easy. Bioinform. 29(14): 1813-1814 (2013) - [j58]Ilenia Boria, Lara Boatti, Graziano Pesole, Flavio Mignone:
NGS-Trex: Next Generation Sequencing Transcriptome profile explorer. BMC Bioinform. 14(S-7): S10 (2013) - [j57]Mattia D'Antonio, Paolo D'Onorio De Meo, Daniele Paoletti, Berardino Elmi, Matteo Pallocca, Nico Sanna, Ernesto Picardi, Graziano Pesole, Tiziana Castrignanò:
WEP: a high-performance analysis pipeline for whole-exome data. BMC Bioinform. 14(S-7): S11 (2013) - [j56]Matteo Giulietti, Francesco Piva, Mattia D'Antonio, Paolo D'Onorio De Meo, Daniele Paoletti, Tiziana Castrignanò, Anna Maria D'Erchia, Ernesto Picardi, Federico Zambelli, Giovanni Principato, Giulio Pavesi, Graziano Pesole:
SpliceAid-F: a database of human splicing factors and their RNA-binding sites. Nucleic Acids Res. 41(Database-Issue): 125-131 (2013) - [j55]Federico Zambelli, Graziano Pesole, Giulio Pavesi:
PscanChIP: finding over-represented transcription factor-binding site motifs and their correlations in sequences from ChIP-Seq experiments. Nucleic Acids Res. 41(Webserver-Issue): 535-543 (2013) - [c9]Vitoantonio Bevilacqua, Nicola Pietroleonardo, Ely Ignazio Giannino, Fabio Stroppa, Graziano Pesole, Ernesto Picardi:
Clustering and Assembling Large Transcriptome Datasets by EasyCluster2. ICIC (3) 2013: 231-236 - 2012
- [j54]Gabriel Valiente, Graziano Pesole:
Editorial. Briefings Bioinform. 13(6): 645 (2012) - [j53]Monica Santamaria, Bruno Fosso, Arianna Consiglio, Giorgio De Caro, Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Marinella Marzano, Daniel Alonso-Alemany, Gabriel Valiente, Graziano Pesole:
Reference databases for taxonomic assignment in metagenomics. Briefings Bioinform. 13(6): 682-695 (2012) - [j52]Yuri Pirola, Raffaella Rizzi, Ernesto Picardi, Graziano Pesole, Gianluca Della Vedova, Paola Bonizzoni:
PIntron: a fast method for detecting the gene structure due to alternative splicing via maximal pairings of a pattern and a text. BMC Bioinform. 13(S-5): S2 (2012) - [j51]Paolo D'Onorio De Meo, Mattia D'Antonio, Francesca Griggio, Renato Lupi, Massimiliano Borsani, Giulio Pavesi, Tiziana Castrignanò, Graziano Pesole, Carmela Gissi:
MitoZoa 2.0: a database resource and search tools for comparative and evolutionary analyses of mitochondrial genomes in Metazoa. Nucleic Acids Res. 40(Database-Issue): 1168-1172 (2012) - [j50]Federico Zambelli, Gian Marco Prazzoli, Graziano Pesole, Giulio Pavesi:
Cscan: finding common regulators of a set of genes by using a collection of genome-wide ChIP-seq datasets. Nucleic Acids Res. 40(Web-Server-Issue): 510-515 (2012) - 2011
- [j49]Ernesto Picardi, Mattia D'Antonio, Danilo Carrabino, Tiziana Castrignanò, Graziano Pesole:
ExpEdit: a webserver to explore human RNA editing in RNA-Seq experiments. Bioinform. 27(9): 1311-1312 (2011) - [j48]Pier Luigi Martelli, Mattia D'Antonio, Paola Bonizzoni, Tiziana Castrignanò, Anna Maria D'Erchia, Paolo D'Onorio De Meo, Piero Fariselli, Michele Finelli, Flavio Licciulli, Marina Mangiulli, Flavio Mignone, Giulio Pavesi, Ernesto Picardi, Raffaella Rizzi, Ivan Rossi, Alessio Valletti, Andrea Zauli, Federico Zambelli, Rita Casadio, Graziano Pesole:
ASPicDB: a database of annotated transcript and protein variants generated by alternative splicing. Nucleic Acids Res. 39(Database-Issue): 80-85 (2011) - 2010
- [j47]David Stephen Horner, Giulio Pavesi, Tiziana Castrignanò, Paolo D'Onorio De Meo, Sabino Liuni, Michael Sammeth, Ernesto Picardi, Graziano Pesole:
Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing. Briefings Bioinform. 11(2): 181-197 (2010) - [j46]Giorgio Grillo, Antonio Turi, Flavio Licciulli, Flavio Mignone, Sabino Liuni, Sandro Banfi, Vincenzo Alessandro Gennarino, David Stephen Horner, Giulio Pavesi, Ernesto Picardi, Graziano Pesole:
UTRdb and UTRsite (RELEASE 2010): a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs. Nucleic Acids Res. 38(Database-Issue): 75-80 (2010) - [c8]Vitoantonio Bevilacqua, Ernesto Picardi, Graziano Pesole, Daniele Ranieri, Vincenzo Stola, Vito Renò:
New Tools for Expression Alternative Splicing Validation. ICIC (3) 2010: 222-231
2000 – 2009
- 2009
- [j45]Teresa Maria Creanza, David Stephen Horner, Annarita D'Addabbo, Rosalia Maglietta, Flavio Mignone, Nicola Ancona, Graziano Pesole:
Statistical assessment of discriminative features for protein-coding and non coding cross-species conserved sequence elements. BMC Bioinform. 10(S-6) (2009) - [j44]Ernesto Picardi, Flavio Mignone, Graziano Pesole:
EasyCluster: a fast and efficient gene-oriented clustering tool for large-scale transcriptome data. BMC Bioinform. 10(S-6) (2009) - [j43]Matteo Re, Graziano Pesole, David Stephen Horner:
Accurate discrimination of conserved coding and non-coding regions through multiple indicators of evolutionary dynamics. BMC Bioinform. 10: 282 (2009) - [j42]Paola Bonizzoni, Giancarlo Mauri, Graziano Pesole, Ernesto Picardi, Yuri Pirola, Raffaella Rizzi:
Detecting Alternative Gene Structures from Spliced ESTs: A Computational Approach. J. Comput. Biol. 16(1): 43-66 (2009) - [j41]Federico Zambelli, Graziano Pesole, Giulio Pavesi:
Pscan: finding over-represented transcription factor binding site motifs in sequences from co-regulated or co-expressed genes. Nucleic Acids Res. 37(Web-Server-Issue): 247-252 (2009) - 2008
- [j40]David Stephen Horner, Walter Pirovano, Graziano Pesole:
Correlated substitution analysis and the prediction of amino acid structural contacts. Briefings Bioinform. 9(1): 46-56 (2008) - [j39]Tiziana Castrignanò, Mattia D'Antonio, Anna Anselmo, Danilo Carrabino, A. D'Onorio De Meo, Anna Maria D'Erchia, Flavio Licciulli, Marina Mangiulli, Flavio Mignone, Giulio Pavesi, Ernesto Picardi, Alberto Riva, Raffaella Rizzi, Paola Bonizzoni, Graziano Pesole:
ASPicDB: A database resource for alternative splicing analysis. Bioinform. 24(10): 1300-1304 (2008) - [j38]Graziano Pesole, Manuela Helmer-Citterich:
Bioinformatics in Italy: BITS2007, the fourth annual meeting of the Italian Society of Bioinformatics. BMC Bioinform. 9(S-2) (2008) - [c7]Tyler S. Alioto, Roderic Guigó, Ernesto Picardi, Graziano Pesole:
GenePC and ASPIC Integrate Gene Predictions with Expressed Sequence Alignments To Predict Alternative Transcripts. APBC 2008: 363-372 - [c6]Paolo D'Onorio De Meo, Danilo Carrabino, Mattia D'Antonio, Annarita D'Addabbo, Sabino Liuni, Flavio Mignone, Graziano Pesole, Nicola Ancona:
HT-RLS: High-Throughput Web Tool for Analysis of DNA Microarray Data Using RLS classifiers. CCGRID 2008: 747-752 - 2007
- [j37]Rosalia Maglietta, Annarita D'Addabbo, Ada Piepoli, Francesco Perri, Sabino Liuni, Graziano Pesole, Nicola Ancona:
Selection of relevant genes in cancer diagnosis based on their prediction accuracy. Artif. Intell. Medicine 40(1): 29-44 (2007) - [j36]Rosalia Maglietta, Ada Piepoli, Domenico Catalano, Piepoli Licciulli, Massimo Carella, Sabino Liuni, Graziano Pesole, Francesco Perri, Nicola Ancona:
Statistical assessment of functional categories of genes deregulated in pathological conditions by using microarray data. Bioinform. 23(16): 2063-2072 (2007) - [j35]Rita Casadio, Manuela Helmer-Citterich, Graziano Pesole:
Bioinformatics in Italy: BITS2006, the third annual meeting of the Italian Society of Bioinformatics. BMC Bioinform. 8(S-1) (2007) - [j34]Giulio Pavesi, Federico Zambelli, Graziano Pesole:
WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences. BMC Bioinform. 8 (2007) - [j33]Elisabetta Sbisà, Domenico Catalano, Giorgio Grillo, Flavio Licciulli, Antonio Turi, Sabino Liuni, Graziano Pesole, Anna De Grassi, Mariano Francesco Caratozzolo, Anna Maria D'Erchia, Beatriz Navarro, Apollonia Tullo, Cecilia Saccone, Andreas Gisel:
p53FamTaG: a database resource of human p53, p63 and p73 direct target genes combining in silico prediction and microarray data. BMC Bioinform. 8(S-1) (2007) - [j32]Paolo D'Onorio De Meo, Danilo Carrabino, Nico Sanna, Tiziana Castrignanò, Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Matteo Re, Flavio Mignone, Graziano Pesole:
A high performance grid-web service framework for the identification of 'conserved sequence tags'. Future Gener. Comput. Syst. 23(3): 371-381 (2007) - 2006
- [j31]Tiziana Castrignanò, Paolo D'Onorio De Meo, Giorgio Grillo, Sabino Liuni, Flavio Mignone, Ivano Giuseppe Talamo, Graziano Pesole:
GenoMiner: a tool for genome-wide search of coding and non-coding conserved sequence tags. Bioinform. 22(4): 497-499 (2006) - [j30]Nicola Ancona, Rosalia Maglietta, Ada Piepoli, Annarita D'Addabbo, R. Cotugno, M. Savino, Sabino Liuni, Massimo Carella, Graziano Pesole, Francesco Perri:
On the statistical assessment of classifiers using DNA microarray data. BMC Bioinform. 7: 387 (2006) - [j29]Tiziana Castrignanò, Raffaella Rizzi, Ivano Giuseppe Talamo, Paolo D'Onorio De Meo, Anna Anselmo, Paola Bonizzoni, Graziano Pesole:
ASPIC: a web resource for alternative splicing prediction and transcript isoforms characterization. Nucleic Acids Res. 34(Web-Server-Issue): 440-443 (2006) - [j28]Giulio Pavesi, Paolo Mereghetti, Federico Zambelli, Marco Stefani, Giancarlo Mauri, Graziano Pesole:
MoD Tools: regulatory motif discovery in nucleotide sequences from co-regulated or homologous genes. Nucleic Acids Res. 34(Web-Server-Issue): 566-570 (2006) - [c5]Rosalia Maglietta, Annarita D'Addabbo, Ada Piepoli, Francesco Perri, Sabino Liuni, Graziano Pesole, Nicola Ancona:
Classification error as a measure of gene relevance in cancer diagnosis. IJCNN 2006: 3553-3560 - 2005
- [j27]Nicola Ancona, Rosalia Maglietta, Annarita D'Addabbo, Sabino Liuni, Graziano Pesole:
Regularized Least Squares Cancer Classifiers from DNA microarray data. BMC Bioinform. 6(S-4) (2005) - [j26]Paola Bonizzoni, Raffaella Rizzi, Graziano Pesole:
ASPIC: a novel method to predict the exon-intron structure of a gene that is optimally compatible to a set of transcript sequences. BMC Bioinform. 6: 244 (2005) - [j25]Manuela Helmer-Citterich, Rita Casadio, Alessandro Guffanti, Giancarlo Mauri, Luciano Milanesi, Graziano Pesole, Giorgio Valle, Cecilia Saccone:
Overview of BITS2005, the Second Annual Meeting of the Italian Bioinformatics Society. BMC Bioinform. 6(S-4) (2005) - [j24]Flavio Mignone, Giorgio Grillo, Flavio Licciulli, Michele Iacono, Sabino Liuni, Paul J. Kersey, Jorge Duarte, Cecilia Saccone, Graziano Pesole:
UTRdb and UTRsite: a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs. Nucleic Acids Res. 33(Database-Issue): 141-146 (2005) - [j23]Angelo Boccia, Mauro Petrillo, Diego di Bernardo, Alessandro Guffanti, Flavio Mignone, Stefano Confalonieri, Lucilla Luzi, Graziano Pesole, Giovanni Paolella, Andrea Ballabio, Sandro Banfi:
DG-CST (Disease Gene Conserved Sequence Tags), a database of human-mouse conserved elements associated to disease genes. Nucleic Acids Res. 33(Database-Issue): 505-510 (2005) - [c4]Nicola Ancona, Annarita D'Addabbo, Sabino Liuni, Graziano Pesole, Rosalia Maglietta:
SVM and RLS Models for Cancer Classification. Computational Intelligence 2005: 250-255 - 2004
- [j22]Giulio Pavesi, Giancarlo Mauri, Graziano Pesole:
In silico representation and discovery of transcription factor binding sites. Briefings Bioinform. 5(3): 217-236 (2004) - [j21]Flavio Mignone, David Stephen Horner, Graziano Pesole:
WebVar: a resource for the rapid estimation of relative site variability from multiple sequence alignments. Bioinform. 20(8): 1331-1333 (2004) - [j20]Andreas Gisel, Maria Panetta, Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Cecilia Saccone, Graziano Pesole:
DNAfan: a software tool for automated extraction and analysis of user-defined sequence regions. Bioinform. 20(18): 3676-3679 (2004) - [j19]Giulio Pavesi, Giancarlo Mauri, Graziano Pesole:
An Algorithm for Finding Conserved Secondary Structure Motifs in Unaligned RNA Sequences. J. Comput. Sci. Technol. 19(1): 2-12 (2004) - [j18]Giulio Pavesi, Paolo Mereghetti, Giancarlo Mauri, Graziano Pesole:
Weeder Web: discovery of transcription factor binding sites in a set of sequences from co-regulated genes. Nucleic Acids Res. 32(Web-Server-Issue): 199-203 (2004) - [j17]Tiziana Castrignanò, Alessandro Canali, Giorgio Grillo, Sabino Liuni, Flavio Mignone, Graziano Pesole:
CSTminer: a web tool for the identification of coding and noncoding conserved sequence tags through cross-species genome comparison. Nucleic Acids Res. 32(Web-Server-Issue): 624-627 (2004) - 2003
- [b1]Cecilia Saccone, Graziano Pesole:
Handbook of Comparative Genomics - Principles and Methodology. Wiley 2003, ISBN 978-0-471-39128-9, pp. I-XIV, 1-427 - [j16]David Stephen Horner, Graziano Pesole:
The estimation of relative site variability among aligned homologous protein sequences. Bioinform. 19(5): 600-606 (2003) - [j15]Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Elisabetta Sbisà, Graziano Pesole:
PatSearch: a program for the detection of patterns and structural motifs in nucleotide sequences. Nucleic Acids Res. 31(13): 3608-3612 (2003) - [c3]Giulio Pavesi, Giancarlo Mauri, Graziano Pesole:
Predicting Conserved Hairpin Motifs in Unaligned RNA Sequences. ICTAI 2003: 10-17 - [c2]Paola Bonizzoni, Graziano Pesole, Raffaella Rizzi:
A Method to Detect Gene Structure and Alternative Splice Sites by Agreeing ESTs to a Genomic Sequence. WABI 2003: 63-77 - 2002
- [j14]Alessandra Larizza, Wojciech Makalowski, Graziano Pesole, Cecilia Saccone:
Evolutionary Dynamics of Mammalian MRNA Untranslated Regions by Comparative Analysis of Orthologous Human, Artiodactyl and Rodent Gene Pairs. Comput. Chem. 26(5): 479-490 (2002) - [j13]Marcella Attimonelli, Domenico Catalano, Carmela Gissi, Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Monica Santamaria, Graziano Pesole, Cecilia Saccone:
MitoNuc: a database of nuclear genes coding for mitochondrial proteins. Update 2002. Nucleic Acids Res. 30(1): 172-173 (2002) - [j12]Graziano Pesole, Sabino Liuni, Giorgio Grillo, Flavio Licciulli, Flavio Mignone, Carmela Gissi, Cecilia Saccone:
UTRdb and UTRsite: specialized databases of sequences and functional elements of 5' and 3' untranslated regions of eukaryotic mRNAs. Update 2002. Nucleic Acids Res. 30(1): 335-340 (2002) - 2001
- [j11]Giulio Pavesi, Giancarlo Mauri, Graziano Pesole:
Methods for Pattern Discovery in Unaligned Biological Sequences. Briefings Bioinform. 2(4): 417 (2001) - [c1]Giulio Pavesi, Giancarlo Mauri, Graziano Pesole:
An algorithm for finding signals of unknown length in DNA sequences. ISMB (Supplement of Bioinformatics) 2001: 207-214 - 2000
- [j10]Graziano Pesole, Giorgio Grillo, Alessandra Larizza, Sabino Liuni:
The Untranslated Regions of Eukaryotic MRNAs: Structure, Function, Evolution and Bioinformatic Tools for Their Analysis. Briefings Bioinform. 1(3): 236-249 (2000) - [j9]Graziano Pesole, Sabino Liuni, Mark D'Souza:
PatSearch: a pattern matcher software that finds functional elements in nucleotide and protein sequences and assesses their statistical significance. Bioinform. 16(5): 439-450 (2000) - [j8]Graziano Pesole, Carmela Gissi, Domenico Catalano, Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Marcella Attimonelli, Cecilia Saccone:
MitoNuc and MitoAln: two related databases of nuclear genes coding for mitochondrial proteins. Nucleic Acids Res. 28(1): 163-165 (2000) - [j7]Graziano Pesole, Sabino Liuni, Giorgio Grillo, Flavio Licciulli, Alessandra Larizza, Wojciech Makalowski, Cecilia Saccone:
UTRdb and UTRsite: specialized databases of sequences and functional elements of 5' and 3' untranslated regions of eukaryotic mRNAs. Nucleic Acids Res. 28(1): 193-196 (2000)
1990 – 1999
- 1999
- [j6]Graziano Pesole, Sabino Liuni, Giorgio Grillo, Matilde Ippedico, Alessandra Larizza, Wojciech Makalowski, Cecilia Saccone:
UTRdb: a specialized database of 5' and 3' untranslated regions of eukaryotic mRNAs. Nucleic Acids Res. 27(1): 188-191 (1999) - 1998
- [j5]Graziano Pesole, Sabino Liuni, Giorgio Grillo, Cecilia Saccone:
UTRdb: a specialized database of 5'- and 3'-untranslated regions of eukaryotic mRNAs. Nucleic Acids Res. 26(1): 192-195 (1998) - 1996
- [j4]Giorgio Grillo, Marcella Attimonelli, Sabino Liuni, Graziano Pesole:
CLEANUP: a fast computer program for removing redundancies from nucleotide sequence databases. Comput. Appl. Biosci. 12(1): 1-8 (1996) - [j3]Graziano Pesole, Giorgio Grillo, Sabino Liuni:
Databases of MRNA Untranslated Regions for Metazoa. Comput. Chem. 20(1): 141-144 (1996) - 1993
- [j2]N. Prunella, Sabino Liuni, Marcella Attimonelli, Graziano Pesole:
FASTPAT: a fast and efficient algorithm for string searching in DNA sequences. Comput. Appl. Biosci. 9(5): 541-545 (1993) - [j1]Sabino Liuni, N. Prunella, Graziano Pesole, Tiziana D'Orazio, Ettore Stella, Arcangelo Distante:
SIMD parallelization of the WORDUP algorithm for detecting statistically significant patterns in DNA sequences. Comput. Appl. Biosci. 9(6): 701-707 (1993)
Coauthor Index
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Privacy notice: By enabling the option above, your browser will contact the API of unpaywall.org to load hyperlinks to open access articles. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Unpaywall privacy policy.
Archived links via Wayback Machine
For web page which are no longer available, try to retrieve content from the 
of the Internet Archive (if available).
Privacy notice: By enabling the option above, your browser will contact the API of archive.org to check for archived content of web pages that are no longer available. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Internet Archive privacy policy.
Reference lists
Add a list of references from 
, 
, and 
to record detail pages.
load references from crossref.org and opencitations.net
Privacy notice: By enabling the option above, your browser will contact the APIs of crossref.org, opencitations.net, and semanticscholar.org to load article reference information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Crossref privacy policy and the OpenCitations privacy policy, as well as the AI2 Privacy Policy covering Semantic Scholar.
Citation data
Add a list of citing articles from and to record detail pages.
load citations from opencitations.net
Privacy notice: By enabling the option above, your browser will contact the API of opencitations.net and semanticscholar.org to load citation information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the OpenCitations privacy policy as well as the AI2 Privacy Policy covering Semantic Scholar.
OpenAlex data
Load additional information about publications from 
.
Privacy notice: By enabling the option above, your browser will contact the API of openalex.org to load additional information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the information given by OpenAlex.
last updated on 2024-08-05 21:14 CEST by the dblp team
all metadata released as open data under CC0 1.0 license
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since 2018, dblp has been operated and maintained by:
the dblp computer science bibliography is funded and supported by:
