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2020 – today
- 2024
[j14]Zhen-Hao Guo
, Yan-Bin Wang, Siguo Wang, Qinhu Zhang, De-Shuang Huang:
scCorrector: a robust method for integrating multi-study single-cell data. Briefings Bioinform. 25(2) (2024)- 2023
- [j13]Qinhu Zhang, Pengrui Teng, Siguo Wang, Ying He, Zhen Cui, Zhenghao Guo, Yixin Liu, Changan Yuan, Qi Liu, De-Shuang Huang:
Computational prediction and characterization of cell-type-specific and shared binding sites. Bioinform. 39(1) (2023) - [j12]Zhen-Hao Guo, Yan Wu, Siguo Wang, Qinhu Zhang, Jin-Ming Shi, Yan-Bin Wang, Zhan-Heng Chen:
scInterpreter: a knowledge-regularized generative model for interpretably integrating scRNA-seq data. BMC Bioinform. 24(1): 481 (2023) - [j11]Zhanheng Chen, Zhuhong You, Qinhu Zhang, Zhen-Hao Guo, Siguo Wang, Yanbin Wang:
In silico prediction methods of self-interacting proteins: an empirical and academic survey. Frontiers Comput. Sci. 17(3): 173901 (2023) - [j10]Ying He, Qinhu Zhang, Siguo Wang, Zhanheng Chen, Zhen Cui, Zhen-Hao Guo, De-Shuang Huang:
Predicting the Sequence Specificities of DNA-Binding Proteins by DNA Fine-Tuned Language Model With Decaying Learning Rates. IEEE ACM Trans. Comput. Biol. Bioinform. 20(1): 616-624 (2023) - [j9]Qinhu Zhang, Youhong Xu, Siguo Wang, Yong Wu, Yuan-Nong Ye, Chang-An Yuan, Valeriya V. Gribova, Vladimir Fedorovich Filaretov, De-Shuang Huang:
Using Fully Convolutional Network to Locate Transcription Factor Binding Sites Based on DNA Sequence and Conservation Information. IEEE ACM Trans. Comput. Biol. Bioinform. 20(5): 2690-2699 (2023) - [j8]Zhen Cui, Siguo Wang, Ying He, Zhan-Heng Chen, Qinhu Zhang:
DeepTPpred: A Deep Learning Approach With Matrix Factorization for Predicting Therapeutic Peptides by Integrating Length Information. IEEE J. Biomed. Health Informatics 27(9): 4611-4622 (2023) - 2022
- [j7]Qinhu Zhang, Ying He, Siguo Wang, Zhanheng Chen, Zhen-Hao Guo, Zhen Cui, Qi Liu, De-Shuang Huang:
Base-resolution prediction of transcription factor binding signals by a deep learning framework. PLoS Comput. Biol. 18(3) (2022) - [j6]Siguo Wang, Qinhu Zhang, Ying He, Zhen Cui, Zhen-Hao Guo, Kyungsook Han, De-Shuang Huang:
DLoopCaller: A deep learning approach for predicting genome-wide chromatin loops by integrating accessible chromatin landscapes. PLoS Comput. Biol. 18(10): 1010572 (2022) - [j5]Qinhu Zhang, Yindong Zhang, Siguo Wang, Zhan-Heng Chen, Valeriya V. Gribova, Vladimir Fedorovich Filaretov, De-Shuang Huang:
Predicting In-Vitro DNA-Protein Binding With a Spatially Aligned Fusion of Sequence and Shape. IEEE ACM Trans. Comput. Biol. Bioinform. 19(6): 3144-3153 (2022) - [j4]Siguo Wang, Ying He, Zhanheng Chen, Qinhu Zhang:
FCNGRU: Locating Transcription Factor Binding Sites by Combing Fully Convolutional Neural Network With Gated Recurrent Unit. IEEE J. Biomed. Health Informatics 26(4): 1883-1890 (2022) - 2021
- [j3]Ying He, Zhen Shen, Qinhu Zhang, Siguo Wang, De-Shuang Huang:
A survey on deep learning in DNA/RNA motif mining. Briefings Bioinform. 22(4) (2021) - [j2]Qinhu Zhang, Siguo Wang, Zhanheng Chen, Ying He, Qi Liu, De-Shuang Huang:
Locating transcription factor binding sites by fully convolutional neural network. Briefings Bioinform. 22(5) (2021) - 2020
- [c3]Ying He, Zhen Shen, Qinhu Zhang, Siguo Wang, Changan Yuan, Xiao Qin, Hongjie Wu, Xingming Zhao:
Three-Layer Dynamic Transfer Learning Language Model for E. Coli Promoter Classification. ICIC (2) 2020: 67-78 - [c2]Siguo Wang, Zhen Shen, Ying He, Qinhu Zhang, Changan Yuan, Xiao Qin, Hongjie Wu, Xingming Zhao:
A New Method Combining DNA Shape Features to Improve the Prediction Accuracy of Transcription Factor Binding Sites. ICIC (2) 2020: 79-89
2010 – 2019
- 2018
- [j1]Xiujuan Lei, Siguo Wang, Linqiang Pan:
Identifying Essential Proteins in Dynamic PPI Network with Improved FOA. Int. J. Comput. Commun. Control 13(3): 365-382 (2018) - 2017
- [c1]Xiujuan Lei, Siguo Wang, Linqiang Pan:
Predicting Essential Proteins Based on Gene Expression Data, Subcellular Localization and PPI Data. BIC-TA 2017: 92-105
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