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ORCIDShawn M. Gomez
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2020 – today
- 2024
[c5]Kathryn E. Kirchoff, Travis Maxfield, Alexander Tropsha, Shawn M. Gomez:
SALSA: Semantically-Aware Latent Space Autoencoder. AAAI 2024: 13211-13219- [c4]Kathryn E. Kirchoff
, James Wellnitz, Joshua E. Hochuli, Travis Maxfield, Konstantin I. Popov, Shawn M. Gomez, Alexander Tropsha:
Utilizing Low-Dimensional Molecular Embeddings for Rapid Chemical Similarity Search. ECIR (2) 2024: 34-49 - [i3]Kathryn E. Kirchoff, James Wellnitz, Joshua E. Hochuli, Travis Maxfield, Konstantin I. Popov, Shawn M. Gomez, Alexander Tropsha:
Utilizing Low-Dimensional Molecular Embeddings for Rapid Chemical Similarity Search. CoRR abs/2402.07970 (2024) - 2023
- [j9]Matthew E. Berginski, Chinmaya U. Joisa, Brian T. Golitz, Shawn M. Gomez:
Kinome inhibition states and multiomics data enable prediction of cell viability in diverse cancer types. PLoS Comput. Biol. 19(2) (2023) - [i2]Kathryn E. Kirchoff, Travis Maxfield, Alexander Tropsha, Shawn M. Gomez:
SALSA: Semantically-Aware Latent Space Autoencoder. CoRR abs/2310.02744 (2023) - 2022
- [j8]Kathryn E. Kirchoff, Shawn M. Gomez:
EMBER: multi-label prediction of kinase-substrate phosphorylation events through deep learning. Bioinform. 38(8): 2119-2126 (2022) - 2021
- [j7]Matthew E. Berginski, Nienke Moret, Changchang Liu, Dennis Goldfarb, Peter K. Sorger, Shawn M. Gomez:
The Dark Kinase Knowledgebase: an online compendium of knowledge and experimental results of understudied kinases. Nucleic Acids Res. 49(Database-Issue): D529-D535 (2021)
2010 – 2019
- 2013
- [i1]Matthew E. Berginski, Shawn M. Gomez:
The Focal Adhesion Analysis Server: a web tool for analyzing focal adhesion dynamics. F1000Research 2: 68 (2013) - 2011
- [j6]Ke Xu, Kevin T. Morgan, Abby Todd Gehris, Timothy C. Elston, Shawn M. Gomez:
A Whole-Body Model for Glycogen Regulation Reveals a Critical Role for Substrate Cycling in Maintaining Blood Glucose Homeostasis. PLoS Comput. Biol. 7(12) (2011) - 2010
- [j5]Jennifer M. Staab, Thomas M. O'Connell, Shawn M. Gomez:
Enhancing metabolomic data analysis with Progressive Consensus Alignment of NMR Spectra (PCANS). BMC Bioinform. 11: 123 (2010)
2000 – 2009
- 2009
- [j4]Kwangbom Choi, Shawn M. Gomez:
Comparison of phylogenetic trees through alignment of embedded evolutionary distances. BMC Bioinform. 10: 423 (2009) - 2003
- [j3]Shawn M. Gomez, William Stafford Noble, Andrey Rzhetsky:
Learning to predict protein-protein interactions from protein sequences. Bioinform. 19(15): 1875-1881 (2003) - 2002
- [c3]Michael Krauthammer, Pauline Kra, Ivan Iossifov, Shawn M. Gomez, George Hripcsak, Vasileios Hatzivassiloglou, Carol Friedman, Andrey Rzhetsky:
Of truth and pathways: chasing bits of information through myriads of articles. ISMB 2002: 249-257 - [c2]Shawn M. Gomez, Andrey Rzhetsky:
Towards the Prediction of Complete Protein-Protein Interaction Networks. Pacific Symposium on Biocomputing 2002: 413-424 - 2001
- [j2]Andrey Rzhetsky, Shawn M. Gomez:
Birth of scale-free molecular networks and the number of distinct DNA and protein domains per genome. Bioinform. 17(10): 988-996 (2001) - [c1]Andrey Rzhetsky, Michael Krauthammer, Tomohiro Koike, Pauline Kra, Shawn M. Gomez, Hong Yu, Pablo Ariel Duboué, Wubin Weng, Stephen B. Johnson, Vasileios Hatzivassiloglou, Carol Friedman:
GeneWays: A System for Mining Text and for Integrating Data on Molecular Pathways. German Conference on Bioinformatics 2001: 2-5 - 2000
- [j1]Andrey Rzhetsky, Tomohiro Koike, Sergey Kalachikov, Shawn M. Gomez, Michael Krauthammer, Sabina H. Kaplan, Pauline Kra, James J. Russo, Carol Friedman:
A knowledge model for analysis and simulation of regulatory networks. Bioinform. 16(12): 1120-1128 (2000)
Coauthor Index
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