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Yanju Zhang
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2020 – today
- 2024
- [j13]Rongxing Wang, Yanju Zhang:
Accelerating spliced alignment of long RNA sequencing reads using parallel maximal exact match retrieval. Comput. Biol. Medicine 175: 108542 (2024) - 2023
- [c7]Yanju Zhang, Wangjing Qi, Ruohan Lin, Jinli Fan:
SpliceCannon: A novel framework for the prediction of canonical and non-canonical splice sites based on deep learning. BIBM 2023: 142-146 - [c6]Rongxing Wang, Junwei Xu, Xiaodi Huang, Wangjing Qi, Yanju Zhang:
SpliceSCANNER: An Accurate and Interpretable Deep Learning-Based Method for Splice Site Prediction. ICIC (3) 2023: 447-459 - [c5]Xiaobin Lan, Jiaming Mei, Ruohan Lin, Jiahao Chen, Yanju Zhang:
A Weakly Supervised Semantic Segmentation Method on Lung Adenocarcinoma Histopathology Images. ICIC (2) 2023: 688-698 - 2022
- [c4]Xiaohan Sun, Yanju Zhang, Xiaobin Huang, Fangzhou Wang, Zugang Mo:
Vehicle Violation Detection System Based on Improved YOLOv5 Algorithm. CIS 2022: 148-152 - 2021
- [j12]Ruopeng Xie, Jiahui Li, Jiawei Wang, Wei Dai, André Leier, Tatiana T. Marquez-Lago, Tatsuya Akutsu, Trevor Lithgow, Jiangning Song, Yanju Zhang:
DeepVF: a deep learning-based hybrid framework for identifying virulence factors using the stacking strategy. Briefings Bioinform. 22(3) (2021) - [j11]Jiawei Wang, Wei Dai, Jiahui Li, Qi Li, Ruopeng Xie, Yanju Zhang, Christopher Stubenrauch, Trevor Lithgow:
AcrHub: an integrative hub for investigating, predicting and mapping anti-CRISPR proteins. Nucleic Acids Res. 49(Database-Issue): D630-D638 (2021) - [j10]Jiawei Wang, Jiahui Li, Yi Hou, Wei Dai, Ruopeng Xie, Tatiana T. Marquez-Lago, André Leier, Tieli Zhou, Von Torres, Iain Hay, Christopher Stubenrauch, Yanju Zhang, Jiangning Song, Trevor Lithgow:
BastionHub: a universal platform for integrating and analyzing substrates secreted by Gram-negative bacteria. Nucleic Acids Res. 49(Database-Issue): D651-D659 (2021) - 2020
- [j9]Yanju Zhang, Yue Wang, Shiqin Wang:
Improvement of Collaborative Filtering Recommendation Algorithm Based on Intuitionistic Fuzzy Reasoning Under Missing Data. IEEE Access 8: 51324-51332 (2020) - [j8]Yanju Zhang, Sha Yu, Ruopeng Xie, Jiahui Li, André Leier, Tatiana T. Marquez-Lago, Tatsuya Akutsu, Alexander Ian Smith, Zongyuan Ge, Jiawei Wang, Trevor Lithgow, Jiangning Song:
PeNGaRoo, a combined gradient boosting and ensemble learning framework for predicting non-classical secreted proteins. Bioinform. 36(3): 704-712 (2020) - [j7]Jiawei Wang, Wei Dai, Jiahui Li, Ruopeng Xie, Rhys A. Dunstan, Christopher Stubenrauch, Yanju Zhang, Trevor Lithgow:
PaCRISPR: a server for predicting and visualizing anti-CRISPR proteins. Nucleic Acids Res. 48(Webserver-Issue): W348-W357 (2020)
2010 – 2019
- 2019
- [j6]Yanju Zhang, Ruopeng Xie, Jiawei Wang, André Leier, Tatiana T. Marquez-Lago, Tatsuya Akutsu, Geoffrey I. Webb, Kuo-Chen Chou, Jiangning Song:
Computational analysis and prediction of lysine malonylation sites by exploiting informative features in an integrative machine-learning framework. Briefings Bioinform. 20(6): 2185-2199 (2019) - [j5]Jiawei Wang, Jiahui Li, Bingjiao Yang, Ruopeng Xie, Tatiana T. Marquez-Lago, André Leier, Morihiro Hayashida, Tatsuya Akutsu, Yanju Zhang, Kuo-Chen Chou, Joel Selkrig, Tieli Zhou, Jiangning Song, Trevor Lithgow:
Bastion3: a two-layer ensemble predictor of type III secreted effectors. Bioinform. 35(12): 2017-2028 (2019) - 2018
- [j4]Jiawei Wang, Bingjiao Yang, André Leier, Tatiana T. Marquez-Lago, Morihiro Hayashida, Andrea Rocker, Yanju Zhang, Tatsuya Akutsu, Kuo-Chen Chou, Richard A. Strugnell, Jiangning Song, Trevor Lithgow:
Bastion6: a bioinformatics approach for accurate prediction of type VI secreted effectors. Bioinform. 34(15): 2546-2555 (2018) - 2012
- [j3]Yanju Zhang, Eric-Wubbo Lameijer, Peter A. C. 't Hoen, Zemin Ning, P. Eline Slagboom, Kai Ye:
PASSion: a pattern growth algorithm-based pipeline for splice junction detection in paired-end RNA-Seq data. Bioinform. 28(4): 479-486 (2012) - 2011
- [j2]Yanju Zhang, Elia Stupka, Christiaan V. Henkel, Hans J. Jansen, Herman P. Spaink, Fons J. Verbeek:
Identification of Common Carp Innate Immune Genes with Whole-Genome Sequencing and RNA-Seq Data. J. Integr. Bioinform. 8(2) (2011) - 2010
- [j1]Yanju Zhang, Fons J. Verbeek:
Comparison and Integration of Target Prediction Algorithms for microRNA Studies. J. Integr. Bioinform. 7(3) (2010)
2000 – 2009
- 2008
- [c3]Yanju Zhang, Jeroen S. de Bruin, Fons J. Verbeek:
miRNA target prediction through mining of miRNA relationships. BIBE 2008: 1-6 - 2007
- [c2]Gihan Dawelbait, Christof Winter, Yanju Zhang, Christian Pilarsky, Robert Grützmann, Jörg-Christian Heinrich, Michael Schroeder:
Structural templates predict novel protein interactions and targets from pancreas tumour gene expression data. ISMB/ECCB (Supplement of Bioinformatics) 2007: 115-124 - 2005
- [c1]Gihan Dawelbait, Christian Pilarsky, Yanju Zhang, Robert Grützmann, Michael Schroeder:
Structural Protein Interactions Predict Kinase-Inhibitor Interactions in Upregulated Pancreas Tumour Genes Expression Data. CompLife 2005: 1-11
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