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2020 – today
- 2024
[i3]Harshad Hegde, Jennifer Vendetti, Damien Goutte-Gattat, J. Harry Caufield, John Graybeal, Nomi L. Harris, Naouel Karam, Christian Kindermann, Nicolas Matentzoglu, James A. Overton, Mark A. Musen, Christopher J. Mungall:
A Change Language for Ontologies and Knowledge Graphs. CoRR abs/2409.13906 (2024)- 2023
- [j22]Jarjapu Mahita
, Brendan Ha, Anais Gambiez, Sharon L. Schendel, Haoyang Li, Kathryn M. Hastie, S. Moses Dennison, Kan Li, Natalia Kuzmina, Sivakumar Periasamy, Alexander Bukreyev, Jennifer E. Munt, Mary Osei-Twum, Caroline Atyeo, James A. Overton, Randi Vita, Hector Guzman-Orozco, Marcus Mendes, Mari Kojima, Peter J. Halfmann, Yoshihiro Kawaoka, Galit Alter, Luc Gagnon, Ralph S. Baric, Georgia D. Tomaras, Tim Germann, Daniel Bedinger, Jason A. Greenbaum, Erica Ollmann Saphire, Bjoern Peters:
Coronavirus Immunotherapeutic Consortium Database. Database J. Biol. Databases Curation 2023 (2023) - 2022
- [j21]Nicolas Matentzoglu, James P. Balhoff, Susan M. Bello, Chris Bizon, Matthew H. Brush, Tiffany J. Callahan, Christopher G. Chute, William D. Duncan, Chris T. A. Evelo, Davera Gabriel, John Graybeal, Alasdair J. G. Gray, Benjamin M. Gyori, Melissa A. Haendel, Henriette Harmse, Nomi L. Harris, Ian Harrow, Harshad Hegde, Amelia L. Hoyt, Charles Tapley Hoyt, Dazhi Jiao, Ernesto Jiménez-Ruiz, Simon Jupp, Hyeongsik Kim, Sebastian Köhler, Thomas Liener, Qinqin Long, James Malone, James A. McLaughlin, Julie A. McMurry, Sierra A. T. Moxon, Monica C. Munoz-Torres, David Osumi-Sutherland, James A. Overton, Bjoern Peters, Tim E. Putman, Núria Queralt-Rosinach, Kent A. Shefchek, Harold Solbrig, Anne E. Thessen, Tania Tudorache, Nicole A. Vasilevsky, Alex H. Wagner, Christopher J. Mungall:
A Simple Standard for Sharing Ontological Mappings (SSSOM). Database J. Biol. Databases Curation 2022(2022) (2022) - [j20]Nicolas Matentzoglu, Damien Goutte-Gattat, Shawn Zheng Kai Tan, James P. Balhoff, Seth Carbon, Anita R. Caron, William D. Duncan, Joe E. Flack, Melissa A. Haendel, Nomi L. Harris, William R. Hogan, Charles Tapley Hoyt, Rebecca C. Jackson, Hyeongsik Kim, Hüseyin Kir, Martin Larralde, Julie A. McMurry, James A. Overton, Bjoern Peters, Clare Pilgrim, Raymund Stefancsik, Sofia M. C. Robb, Sabrina Toro, Nicole A. Vasilevsky, Ramona L. Walls, Christopher J. Mungall, David Osumi-Sutherland:
Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies. Database J. Biol. Databases Curation 2022(2022) (2022) - [c12]Emily Hartley, Daniel Olson, Ian Braun, Nicolas Matentzoglu, James A. Overton, Ramona L. Walls:
Building an Application Ontology and Knowledge Graph for Rare Disease Patient-Level Data. ICBO 2022: 1 - [c11]James A. Overton:
The OntoDev Suite of Ontology and Data Integration Tools. ICBO 2022: 1 - [c10]James A. Overton, Rebecca C. Jackson, Nicolas Matentzoglu, William D. Duncan, Randi Vita, Nomi L. Harris, Christopher J. Mungall, Bjoern Peters:
COB: A Core Ontology for Biology and Biomedicine. ICBO 2022: 1 - [c9]James A. Overton, Rebecca C. Jackson, Sabrina Toro, Shawn Zheng Kai Tan, Bradley Varner, David Osumi-Sutherland, Nicolas Matentzoglu, Nicole A. Vasilevsky:
OBO Academy: Training Materials for Bioontologists. ICBO 2022: 1 - [i2]Nicolas Matentzoglu, Damien Goutte-Gattat, Shawn Zheng Kai Tan, James P. Balhoff, Seth Carbon, Anita R. Caron, William D. Duncan, Joe E. Flack, Melissa A. Haendel, Nomi L. Harris, William R. Hogan, Charles Tapley Hoyt, Rebecca C. Jackson, Hyeongsik Kim, Hüseyin Kir, Martin Larralde, Julie A. McMurry, James A. Overton, Bjoern Peters, Clare Pilgrim, Raymund Stefancsik, Sofia M. C. Robb, Sabrina Toro, Nicole A. Vasilevsky, Ramona L. Walls, Christopher J. Mungall, David Osumi-Sutherland:
Ontology Development Kit: a toolkit for building, maintaining, and standardising biomedical ontologies. CoRR abs/2207.02056 (2022) - 2021
- [j19]Lindy Edwards, Rebecca C. Jackson, James A. Overton, Randi Vita, Nina Blazeska, Bjoern Peters, Alessandro Sette:
An immunologically friendly classification of non-peptidic ligands. Database J. Biol. Databases Curation 2021 (2021) - [j18]Rebecca C. Jackson, Nicolas Matentzoglu, James A. Overton, Randi Vita, James P. Balhoff, Pier Luigi Buttigieg, Seth Carbon, Mélanie Courtot, Alexander D. Diehl, Damion M. Dooley, William D. Duncan, Nomi L. Harris, Melissa A. Haendel, Suzanna E. Lewis, Darren A. Natale, David Osumi-Sutherland, Alan Ruttenberg, Lynn M. Schriml, Barry Smith, Christian J. Stoeckert Jr., Nicole A. Vasilevsky, Ramona L. Walls, Jie Zheng, Christopher J. Mungall, Bjoern Peters:
OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies. Database J. Biol. Databases Curation 2021 (2021) - [j17]Randi Vita, Jie Zheng, Rebecca C. Jackson, Damion M. Dooley, James A. Overton, Mark A. Miller, Daniel C. Berrios, Richard H. Scheuermann, Yongqun He, Hande Küçük-McGinty, Mathias Brochhausen, Aisyah Yu Lin, Sagar B. Jain, Marcus C. Chibucos, John Judkins, Michelle G. Giglio, Irene Y. Feng, Gully Burns, Matthew H. Brush, Bjoern Peters, Christian J. Stoeckert Jr.:
Standardization of assay representation in the Ontology for Biomedical Investigations. Database J. Biol. Databases Curation 2021 (2021) - [i1]Nicolas Matentzoglu, James P. Balhoff, Susan M. Bello, Chris Bizon, Matthew H. Brush, Tiffany J. Callahan, Christopher G. Chute, William D. Duncan, Chris T. A. Evelo, Davera Gabriel, John Graybeal, Alasdair J. G. Gray, Benjamin M. Gyori, Melissa A. Haendel, Henriette Harmse, Nomi L. Harris, Ian Harrow, Harshad Hegde, Amelia L. Hoyt, Charles Tapley Hoyt, Dazhi Jiao, Ernesto Jiménez-Ruiz, Simon Jupp, Hyeongsik Kim, Sebastian Köhler, Thomas Liener, Qinqin Long, James Malone, James A. McLaughlin, Julie A. McMurry, Sierra A. T. Moxon, Monica C. Munoz-Torres, David Osumi-Sutherland, James A. Overton, Bjoern Peters, Tim E. Putman, Núria Queralt-Rosinach, Kent A. Shefchek, Harold Solbrig, Anne E. Thessen, Tania Tudorache, Nicole A. Vasilevsky, Alex H. Wagner, Christopher J. Mungall:
A Simple Standard for Sharing Ontological Mappings (SSSOM). CoRR abs/2112.07051 (2021) - 2020
- [j16]Randi Vita, James A. Overton, Patrick Dunn, Kei-Hoi Cheung, Steven H. Kleinstein, Alessandro Sette, Bjoern Peters:
A structured model for immune exposures. Database J. Biol. Databases Curation 2020 (2020) - [j15]James A. Overton, Michael Cuffaro, Christopher J. Mungall:
String of PURLs - frugal migration and maintenance of persistent identifiers. Data Sci. 3(1): 3-13 (2020)
2010 – 2019
- 2019
- [j14]Rebecca C. Jackson, James P. Balhoff, Eric Douglass, Nomi L. Harris, Christopher J. Mungall, James A. Overton:
ROBOT: A Tool for Automating Ontology Workflows. BMC Bioinform. 20(1): 407:1-407:10 (2019) - [j13]James A. Overton, Randi Vita, Patrick Dunn, Julie G. Burel, Syed Ahmad Chan Bukhari, Kei-Hoi Cheung, Steven H. Kleinstein, Alexander D. Diehl, Bjoern Peters:
Reporting and connecting cell type names and gating definitions through ontologies. BMC Bioinform. 20-S(5): 259-264 (2019) - [j12]Randi Vita, Swapnil Mahajan, James A. Overton, Sandeep Kumar Dhanda, Sheridan Martini, Jason R. Cantrell, Daniel K. Wheeler, Alessandro Sette, Bjoern Peters:
The Immune Epitope Database (IEDB): 2018 update. Nucleic Acids Res. 47(Database-Issue): D339-D343 (2019) - 2018
- [j11]Randi Vita, James A. Overton, Christopher J. Mungall, Alessandro Sette, Bjoern Peters:
FAIR principles and the IEDB: short-term improvements and a long-term vision of OBO-foundry mediated machine-actionable interoperability. Database J. Biol. Databases Curation 2018: bax105 (2018) - [j10]Randi Vita, James A. Overton, Bjoern Peters:
Identification of errors in the IEDB using ontologies. Database J. Biol. Databases Curation 2018: bay005 (2018) - [j9]Yongqun He, Zuoshuang Xiang, Jie Zheng, Yu Lin, James A. Overton, Edison Ong:
The eXtensible ontology development (XOD) principles and tool implementation to support ontology interoperability. J. Biomed. Semant. 9(1): 3:1-3:10 (2018) - [c8]Rebecca Tauber, James P. Balhoff, Eric Douglass, Chris Mungall, James A. Overton:
Standardizing Ontology Workflows Using ROBOT. ICBO 2018 - [c7]Randi Vita, Bjoern Peters, James A. Overton, Kei-Hoi Cheung, Steven H. Kleinstein:
Formalizing the Representation of Immune Exposures for Human Immunology Studies. ICBO 2018 - 2017
- [j8]Randi Vita, James A. Overton, Alessandro Sette, Bjoern Peters:
Better living through ontologies at the Immune Epitope Database. Database J. Biol. Databases Curation 2017: bax014 (2017) - [j7]Metin N. Gurcan, John Tomaszewski, James A. Overton, Scott Doyle, Alan Ruttenberg, Barry Smith:
Developing the Quantitative Histopathology Image Ontology (QHIO): A case study using the hot spot detection problem. J. Biomed. Informatics 66: 129-135 (2017) - [c6]Gully A. Burns, Randi Vita, James A. Overton, Ward Fleri, Bjoern Peters:
Semantic Modeling for Accelerated Immune Epitope Database (IEDB) Biocuration. K-CAP Workshops 2017: 7-12 - 2016
- [j6]Randi Vita, James A. Overton, Emily Seymour, John Sidney, Jim Kaufman, Rebecca L. Tallmadge, Shirley Ellis, John Hammond, Geoff W. Butcher, Alessandro Sette, Bjoern Peters:
An ontology for major histocompatibility restriction. J. Biomed. Semant. 7: 1 (2016) - [j5]Heiner Oberkampf, Sonja Zillner, James A. Overton, Bernhard Bauer, Alexander Cavallaro, Michael Uder, Matthias Hammon:
Semantic representation of reported measurements in radiology. BMC Medical Informatics Decis. Mak. 16: 5 (2016) - [c5]James A. Overton:
Humane OWL: RDF and OWL for Humans. ICBO/BioCreative 2016 - 2015
- [j4]Randi Vita, James A. Overton, Jason A. Greenbaum, Julia V. Ponomarenko, Jason D. Clark, Jason R. Cantrell, Daniel K. Wheeler, Joseph L. Gabbard, Deborah Hix, Alessandro Sette, Bjoern Peters:
The immune epitope database (IEDB) 3.0. Nucleic Acids Res. 43(Database-Issue): 405-412 (2015) - [c4]James A. Overton:
EDN-LD: A simple linked data tool. ICBO 2015 - [c3]James A. Overton, Heiko Dietze, Shahim Essaid, David Osumi-Sutherland, Christopher J. Mungall:
ROBOT: A command-line tool for ontology development. ICBO 2015 - 2013
- [j3]Randi Vita, James A. Overton, Jason Greenbaum, Alessandro Sette, Björn Peters:
Query enhancement through the practical application of ontology: the IEDB and OBI. J. Biomed. Semant. 4(S-1): S6 (2013) - [j2]James A. Overton:
"Explain" in scientific discourse. Synth. 190(8): 1383-1405 (2013) - [c2]James A. Overton, Randi Vita, Jason Greenbaum, Heiko Dietze, Alessandro Sette, Bjoern Peters:
A Taxonomy for Immunologists. ICBO 2013: 124 - 2011
- [j1]James A. Overton, Cesare Romagnoli, Rethy Chhem:
Open Biomedical Ontologies applied to prostate cancer. Appl. Ontology 6(1): 35-51 (2011) - [c1]James A. Overton:
Philosophy, Ontology, and Scientific Explanation. ICBO 2011
Coauthor Index
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last updated on 2024-11-08 21:28 CET by the dblp team
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