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ORCIDDavid R. Westhead
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2020 – today
- 2024
[c3]Ethan B. Andrew, David R. Westhead, Luisa Cutillo:
GmGM: a fast multi-axis Gaussian graphical model. AISTATS 2024: 2053-2061- [i2]Bailey Andrew, David R. Westhead, Luisa Cutillo:
Making Multi-Axis Gaussian Graphical Models Scalable to Millions of Samples and Features. CoRR abs/2407.19892 (2024) - 2022
- [i1]Andrew Bailey, David R. Westhead, Luisa Cutillo:
antGLasso: An Efficient Tensor Graphical Lasso Algorithm. CoRR abs/2211.02920 (2022)
2010 – 2019
- 2019
- [j32]Georgette Tanner
, David R. Westhead, Alastair P. Droop, Lucy F. Stead:
Simulation of heterogeneous tumour genomes with HeteroGenesis and in silico whole exome sequencing. Bioinform. 35(16): 2850-2852 (2019) - [j31]M. S. Vijayabaskar, Debbie K. Goode, Nadine Obier, Monika Lichtinger, Amber M. L. Emmett, Fatin N. Zainul Abidin, Nisar Shar, Rebecca Hannah, Salam A. Assi, Michael Lie-A.-Ling, Berthold Göttgens, Georges Lacaud, Valerie Kouskoff, Constanze Bonifer, David R. Westhead:
Identification of gene specific cis-regulatory elements during differentiation of mouse embryonic stem cells: An integrative approach using high-throughput datasets. PLoS Comput. Biol. 15(11) (2019) - 2011
- [j30]Lucy F. Stead, I. C. Wood, David R. Westhead:
KvSNP: accurately predicting the effect of genetic variants in voltage-gated potassium channels. Bioinform. 27(16): 2181-2186 (2011) - 2010
- [j29]Thomas Forth, Glenn A. McConkey, David R. Westhead:
MetNetMaker: a free and open-source tool for the creation of novel metabolic networks in SBML format. Bioinform. 26(18): 2352-2353 (2010) - [j28]Philip M. R. Tedder, James R. Bradford, Chris J. Needham, Glenn A. McConkey, Andrew J. Bulpitt, David R. Westhead:
Gene function prediction using semantic similarity clustering and enrichment analysis in the malaria parasite Plasmodium falciparum. Bioinform. 26(19): 2431-2437 (2010) - [j27]Jiantao Yu, Maozu Guo, Chris J. Needham, Yangchao Huang, Lu Cai, David R. Westhead:
Simple sequence-based kernels do not predict protein-protein interactions. Bioinform. 26(20): 2610-2614 (2010)
2000 – 2009
- 2009
- [j26]Chris J. Needham, Iain W. Manfield, Andrew J. Bulpitt, Philip M. Gilmartin, David R. Westhead:
From gene expression to gene regulatory networks in Arabidopsis thaliana. BMC Syst. Biol. 3: 85 (2009) - [j25]John W. Whitaker, Ivica Letunic, Glenn A. McConkey, David R. Westhead:
metaTIGER: a metabolic evolution resource. Nucleic Acids Res. 37(Database-Issue): 531-538 (2009) - [c2]Philip M. R. Tedder, James R. Bradford, Chris J. Needham, Glenn A. McConkey, Andrew J. Bulpitt, David R. Westhead:
Bayesian Data Integration and Enrichment Analysis for Predicting Gene Function in Malaria. CiE 2009: 457-466 - 2007
- [j24]Matthew A. Care, Chris J. Needham, Andrew J. Bulpitt, David R. Westhead:
Deleterious SNP prediction: be mindful of your training data! Bioinform. 23(6): 664-672 (2007) - [j23]Kanti V. Mardia, Vysaul B. Nyirongo, Peter J. Green, Nicola D. Gold, David R. Westhead:
Bayesian refinement of protein functional site matching. BMC Bioinform. 8 (2007) - [j22]Chris J. Needham, James R. Bradford, Andrew J. Bulpitt, David R. Westhead:
A Primer on Learning in Bayesian Networks for Computational Biology. PLoS Comput. Biol. 3(8) (2007) - 2006
- [j21]Chris J. Needham, James R. Bradford, Andrew J. Bulpitt, Matthew A. Care, David R. Westhead:
Predicting the effect of missense mutations on protein function: analysis with Bayesian networks. BMC Bioinform. 7: 405 (2006) - [j20]Iain W. Manfield, Chih-Hung Jen, John W. Pinney, Ioannis Michalopoulos, James R. Bradford, Philip M. Gilmartin, David R. Westhead:
Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis. Nucleic Acids Res. 34(Web-Server-Issue): 504-509 (2006) - [j19]Christopher Hyland, John W. Pinney, Glenn A. McConkey, David R. Westhead:
metaSHARK: a WWW platform for interactive exploration of metabolic networks. Nucleic Acids Res. 34(Web-Server-Issue): 725-728 (2006) - 2005
- [j18]James R. Bradford, David R. Westhead:
Improved prediction of protein-Cprotein binding sites using a support vector machines approach. Bioinform. 21(8): 1487-1494 (2005) - [j17]Gilleain M. Torrance, David R. Gilbert, Ioannis Michalopoulos, David R. Westhead:
Protein structure topological comparison, discovery and matching service. Bioinform. 21(10): 2537-2538 (2005) - [j16]Andrew G. Garrow, Alison Agnew, David R. Westhead:
TMB-Hunt: An amino acid composition based method to screen proteomes for beta-barrel transmembrane proteins. BMC Bioinform. 6: 56 (2005) - [j15]Archana Sharma-Oates, Philip Quirke, David R. Westhead:
TmaDB: a repository for tissue microarray data. BMC Bioinform. 6: 218 (2005) - [j14]Andrew G. Garrow, Alison Agnew, David R. Westhead:
TMB-Hunt: a web server to screen sequence sets for transmembrane ß-barrel proteins. Nucleic Acids Res. 33(Web-Server-Issue): 188-192 (2005) - 2004
- [j13]Ioannis Michalopoulos, Gilleain M. Torrance, David R. Gilbert, David R. Westhead:
TOPS: an enhanced database of protein structural topology. Nucleic Acids Res. 32(Database-Issue): 251-254 (2004) - 2003
- [j12]James A. R. Dalton, Ioannis Michalopoulos, David R. Westhead:
Calculation of Helix Packing Angles in Protein Structures. Bioinform. 19(10): 1298-1299 (2003) - [j11]Vidhya Gomathi Krishnan, David R. Westhead:
A comparative study of machine-learning methods to predict the effects of single nucleotide polymorphisms on protein function. Bioinform. 19(17): 2199-2209 (2003) - 2002
- [b1]David R. Westhead, John Howard Parish, Richard M. Twyman:
Bioinformatics. Instant notes, BIOS Scientific Publishers 2002, ISBN 978-1-85996-272-5, pp. I-VII, 1-257 - [j10]David R. Gilbert, David R. Westhead, Juris Viksna, Janet M. Thornton:
A Computer System to Perform Structure Comparison using Representations of Protein Structure. Comput. Chem. 26(1): 23-30 (2002) - [j9]Steven J. Pickering, Andrew J. Bulpitt, Nick Efford, Nicola D. Gold, David R. Westhead:
AI-based Algorithms for Protein Surface Comparisons. Comput. Chem. 26(1): 79-84 (2002) - 2000
- [c1]David R. Gilbert, David R. Westhead, Janet M. Thornton, Karine Yvon:
Une technique déclarative pour filtrer des motifs topologiques de protéines. JFPLC 2000: 165-
1990 – 1999
- 1999
- [j8]David R. Gilbert, David R. Westhead, Nozomi Nagano, Janet M. Thornton:
Motif-based searching in TOPS protein topology databases. Bioinform. 15(4): 317-326 (1999) - 1997
- [j7]Christopher W. Murray, David E. Clark, Timothy R. Auton, Michael A. Firth, Jin Li, Richard A. Sykes, Bohdan Waszkowycz, David R. Westhead, Stephen C. Young:
PRO_SELECT: Combining structure-based drug design and combinatorial chemistry for rapid lead discovery. 1. Technology. J. Comput. Aided Mol. Des. 11(2): 193-207 (1997) - [j6]David R. Westhead, David E. Clark, Christopher W. Murray:
A comparison of heuristic search algorithms for molecular docking. J. Comput. Aided Mol. Des. 11(3): 209-228 (1997) - 1996
- [j5]David E. Clark, David R. Westhead:
Evolutionary algorithms in computer-aided molecular design. J. Comput. Aided Mol. Des. 10(4): 337-358 (1996) - [j4]David E. Clark, David R. Westhead, Richard A. Sykes, Christopher W. Murray:
Active-site-directed 3D database searching: Pharmacophore extraction and validation of hits. J. Comput. Aided Mol. Des. 10(5): 397-416 (1996) - 1995
- [j3]David E. Clark, David Frenkel, Stephen A. Levy, Jin Li, Christopher W. Murray, Barry Robson, Bohdan Waszkowycz, David R. Westhead:
PRO_LIGAND: An approach to de novo molecular design. 1. Application to the design of organic molecules. J. Comput. Aided Mol. Des. 9(1): 13-32 (1995) - [j2]David R. Westhead, David E. Clark, David Frenkel, Jin Li, Christopher W. Murray, Barry Robson, Bohdan Waszkowycz:
PRO_LIGAND: An approach to de novo molecular design. 3. A genetic algorithm for structure refinement. J. Comput. Aided Mol. Des. 9(2): 139-148 (1995) - [j1]David Frenkel, David E. Clark, Jin Li, Christopher W. Murray, Barry Robson, Bohdan Waszkowycz, David R. Westhead:
PRO_LIGAND: An approach to de novo molecular design. 4. Application to the design of peptides. J. Comput. Aided Mol. Des. 9(3): 213-225 (1995)
Coauthor Index
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