default search action
Google
Google Scholar
Semantic Scholar
Internet Archive Scholar
CiteSeerX
ORCIDKaterina J. Kechris
Person information
- affiliation: University of Colorado, Colorado School of Public Health, Aurora, CO, USA
Refine list
refinements active!
zoomed in on ?? of ?? records
view refined list in
export refined list as
2020 – today
- 2024
[j23]Weixuan Liu, Thao Vu, Iain R. Konigsberg, Katherine A. Pratte, Yonghua Zhuang, Katerina J. Kechris:
Smccnet 2.0: a comprehensive tool for multi-omics network inference with shiny visualization. BMC Bioinform. 25(1): 276 (2024)- [j22]Cecilia Wieder
, Juliette Cooke, Clément Frainay, Nathalie Poupin, Russell Bowler, Fabien Jourdan, Katerina J. Kechris, Rachel P. J. Lai, Timothy M. D. Ebbels:
PathIntegrate: Multivariate modelling approaches for pathway-based multi-omics data integration. PLoS Comput. Biol. 20(3): 1011814 (2024) - [j21]Alexandria M. Jensen, Peter Dewitt, Brianne M. Bettcher, Julia Wrobel, Katerina J. Kechris, Debashis Ghosh:
Kernel machine tests of association using extrinsic and intrinsic cluster evaluation metrics. PLoS Comput. Biol. 20(11): 1012524 (2024) - [c4]Sundous Hussein, Vicente Ramos, Weixuan Liu, Katerina J. Kechris, Leslie Lange, Russell P. Bowler, Farnoush Banaei Kashani:
Learning from Multi-Omics Networks to Enhance Disease Prediction: An Optimized Network Embedding and Fusion Approach. BIBM 2024: 4371-4378 - 2023
- [j20]Thao Vu, Elizabeth Litkowski, Weixuan Liu, Katherine A. Pratte, Leslie Lange, Russell Bowler, Farnoush Banaei Kashani, Katerina J. Kechris:
NetSHy: network summarization via a hybrid approach leveraging topological properties. Bioinform. 39(1) (2023) - [j19]Patrick M. Carry, Tim Vigers, Lauren A. Vanderlinden, Carson Keeter, Fran Dong, Teresa Buckner, Elizabeth Litkowski, Ivana Yang, Jill M. Norris, Katherina J. Kechris:
Propensity scores as a novel method to guide sample allocation and minimize batch effects during the design of high throughput experiments. BMC Bioinform. 24(1): 86 (2023) - [j18]Charlie M. Carpenter, Lucas A. Gillenwater, Russell Bowler, Katerina J. Kechris, Debashis Ghosh:
TreeKernel: interpretable kernel machine tests for interactions between -omics and clinical predictors with applications to metabolomics and COPD phenotypes. BMC Bioinform. 24(1): 398 (2023) - [j17]Souvik Seal, Qunhua Li, Elle Butler Basner, Laura M. Saba, Katerina J. Kechris:
RCFGL: Rapid Condition adaptive Fused Graphical Lasso and application to modeling brain region co-expression networks. PLoS Comput. Biol. 19(1) (2023) - 2022
- [j16]Jonathan P. Dekermanjian, Elin Shaddox, Debmalya Nandy, Debashis Ghosh, Katerina J. Kechris:
Mechanism-aware imputation: a two-step approach in handling missing values in metabolomics. BMC Bioinform. 23(1): 179 (2022) - [j15]Mohamed Abdel-Hafiz, Mesbah Najafi, Shahab Helmi, Katherine A. Pratte, Yonghua Zhuang, Weixuan Liu, Katerina J. Kechris, Russell Bowler, Leslie Lange, Farnoush Banaei Kashani:
Significant Subgraph Detection in Multi-omics Networks for Disease Pathway Identification. Frontiers Big Data 5 (2022) - [c3]Sundous Hussein, Thao Vu, Leslie Lange, Russell Bowler, Katerina J. Kechris, Farnoush Banaei Kashani:
Effective Subject Representation based on Multi-omics Disease Networks using Graph Embedding. BIBM 2022: 1911-1918 - [c2]Andrew Hill, Russell Bowler, Katerina J. Kechris, Farnoush Banaei Kashani:
Semi-supervised Embedding for Scalable and Accurate Time Series Clustering. IEEE Big Data 2022: 942-951 - 2021
- [j14]Charlie M. Carpenter, Daniel N. Frank, Kayla Williamson, Jaron Arbet, Brandie D. Wagner, Katerina J. Kechris, Miranda Kroehl:
tidyMicro: a pipeline for microbiome data analysis and visualization using the tidyverse in R. BMC Bioinform. 22(1): 41 (2021) - [j13]Tusharkanti Ghosh, Daisy Philtron, Weiming Zhang, Katerina J. Kechris, Debashis Ghosh:
Reproducibility of mass spectrometry based metabolomics data. BMC Bioinform. 22(1): 423 (2021) - [j12]Charlie M. Carpenter, Weiming Zhang, Lucas A. Gillenwater, Cameron Severn, Tusharkanti Ghosh, Russell Bowler, Katerina J. Kechris, Debashis Ghosh:
PaIRKAT: A pathway integrated regression-based kernel association test with applications to metabolomics and COPD phenotypes. PLoS Comput. Biol. 17(10) (2021) - 2020
- [j11]Brian Vestal, Camille M. Moore, Elizabeth Wynn, Laura M. Saba, Tasha Fingerlin, Katerina J. Kechris:
MCMSeq: Bayesian hierarchical modeling of clustered and repeated measures RNA sequencing experiments. BMC Bioinform. 21(1): 375 (2020)
2010 – 2019
- 2019
- [j10]W. Jenny Shi, Yonghua Zhuang, Pamela H. Russell, Brian D. Hobbs, Margaret M. Parker, Peter J. Castaldi, Pratyaydipta Rudra, Brian Vestal, Craig P. Hersh, Laura M. Saba, Katerina J. Kechris:
Unsupervised discovery of phenotype-specific multi-omics networks. Bioinform. 35(21): 4336-4343 (2019) - 2018
- [j9]Yafei Lyu, Lingzhou Xue, Feipeng Zhang, Hillary Koch, Laura M. Saba, Katerina J. Kechris, Qunhua Li:
Condition-adaptive fused graphical lasso (CFGL): An adaptive procedure for inferring condition-specific gene co-expression network. PLoS Comput. Biol. 14(9) (2018) - 2017
- [j8]Charlotte Siska, Russell Bowler, Katerina J. Kechris:
The discordant method: a novel approach for differential correlation. Bioinform. 33(1): 150 (2017) - [j7]Pratyaydipta Rudra, W. Jenny Shi, Brian Vestal, Pamela H. Russell, Aaron Odell, Robin D. Dowell, Richard Radcliffe, Laura M. Saba, Katerina J. Kechris:
Model based heritability scores for high-throughput sequencing data. BMC Bioinform. 18(1): 143:1-143:16 (2017) - 2016
- [j6]Charlotte Siska, Russell Bowler, Katerina J. Kechris:
The discordant method: a novel approach for differential correlation. Bioinform. 32(5): 690-696 (2016) - 2014
- [j5]Subhajyoti De, Brent S. Pedersen, Katerina J. Kechris:
The dilemma of choosing the ideal permutation strategy while estimating statistical significance of genome-wide enrichment. Briefings Bioinform. 15(6): 919-928 (2014) - [j4]Grant Hughes, Charmion Cruickshank-Quinn, Richard Reisdorph, Sharon Lutz, Irina Petrache, Nichole Reisdorph, Russell Bowler, Katerina J. Kechris:
MSPrep - Summarization, normalization and diagnostics for processing of mass spectrometry-based metabolomic data. Bioinform. 30(1): 133-134 (2014) - 2013
- [j3]Nichole Reisdorph, Robert Stearman, Katerina J. Kechris, Tzu Lip Phang, Richard Reisdorph, Jessica E. Prenni, David J. Erle, Christopher Coldren, Kevin L. Schey, Alexey I. Nesvizhskii, Marc Geraci:
Hands-on Workshops as An Effective Means of Learning Advanced Technologies Including Genomics, Proteomics and Bioinformatics. Genom. Proteom. Bioinform. 11(6): 368-377 (2013) - 2012
- [j2]Brent S. Pedersen, David A. Schwartz, Ivana V. Yang, Katerina J. Kechris:
Comb-p: software for combining, analyzing, grouping and correcting spatially correlated P-values. Bioinform. 28(22): 2986-2988 (2012)
2000 – 2009
- 2008
- [j1]Katerina J. Kechris, Hao Li:
c-REDUCE: Incorporating sequence conservation to detect motifs that correlate with expression. BMC Bioinform. 9 (2008) - 2007
- [c1]Hyunmin Kim, Katherina J. Kechris, Lawrence Hunter:
Mining Discriminative Distance Context of Transcription Factor Binding Sites on ChIP Enriched Regions. ISBRA 2007: 338-349
Coauthor Index
manage site settings
To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.
Unpaywalled article links
Add open access links from 
to the list of external document links (if available).
Privacy notice: By enabling the option above, your browser will contact the API of unpaywall.org to load hyperlinks to open access articles. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Unpaywall privacy policy.
Archived links via Wayback Machine
For web page which are no longer available, try to retrieve content from the 
of the Internet Archive (if available).
Privacy notice: By enabling the option above, your browser will contact the API of archive.org to check for archived content of web pages that are no longer available. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Internet Archive privacy policy.
Reference lists
Add a list of references from 
, 
, and 
to record detail pages.
load references from crossref.org and opencitations.net
Privacy notice: By enabling the option above, your browser will contact the APIs of crossref.org, opencitations.net, and semanticscholar.org to load article reference information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Crossref privacy policy and the OpenCitations privacy policy, as well as the AI2 Privacy Policy covering Semantic Scholar.
Citation data
Add a list of citing articles from and to record detail pages.
load citations from opencitations.net
Privacy notice: By enabling the option above, your browser will contact the API of opencitations.net and semanticscholar.org to load citation information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the OpenCitations privacy policy as well as the AI2 Privacy Policy covering Semantic Scholar.
OpenAlex data
Load additional information about publications from 
.
Privacy notice: By enabling the option above, your browser will contact the API of openalex.org to load additional information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the information given by OpenAlex.
last updated on 2025-02-04 22:03 CET by the dblp team
all metadata released as open data under CC0 1.0 license
see also: Terms of Use | Privacy Policy | Imprint
dblp was originally created in 1993 at:
since 2018, dblp has been operated and maintained by:
the dblp computer science bibliography is funded and supported by:
