default search action
Google
Google Scholar
Semantic Scholar
Internet Archive Scholar
CiteSeerX
ORCIDHsien-Da Huang
Person information
Refine list
refinements active!
zoomed in on ?? of ?? records
view refined list in
export refined list as
showing all ?? records
2020 – today
- 2024
[j82]Yixian Huang
, Danhong Dong, Wenyang Zhang, Ruiting Wang, Yang-Chi-Dung Lin, Hua-Li Zuo, Hsi-Yuan Huang, Hsien-Da Huang:
DrugRepoBank: a comprehensive database and discovery platform for accelerating drug repositioning. Database J. Biol. Databases Curation 2024 (2024)- [c14]Yixian Huang, Huacong Wu, Ying Cai, Danhong Dong, Sicong Yu, Yigang Chen, Zihao Zhu, Yang-Chi-Dung Lin, Hsien-Da Huang, Hsi-Yuan Huang:
DeepDrugmiR: a two-stage deep learning method for inferring small molecules' regulatory effects on microRNA expression. BCB 2024: 10:1-10:10 - 2023
- [j81]Mengqi Luo, Shangfu Li, Yuxuan Pang, Lantian Yao, Renfei Ma, Hsi-Yuan Huang, Hsien-Da Huang, Tzong-Yi Lee:
Extraction of microRNA-target interaction sentences from biomedical literature by deep learning approach. Briefings Bioinform. 24(1) (2023) - [j80]Renfei Ma, Shangfu Li, Luca Parisi, Wenshuo Li, Hsien-Da Huang, Tzong-Yi Lee:
Holistic similarity-based prediction of phosphorylation sites for understudied kinases. Briefings Bioinform. 24(2) (2023) - [j79]Rulan Wang, Chia-Ru Chung, Hsien-Da Huang, Tzong-Yi Lee:
Identification of species-specific RNA N6-methyladinosine modification sites from RNA sequences. Briefings Bioinform. 24(2) (2023) - [j78]Yigang Chen, Yang-Chi-Dung Lin, Yijun Luo, Xiao-Xuan Cai, Peng Qiu, Shi-Dong Cui, Zhe Wang, Hsi-Yuan Huang, Hsien-Da Huang:
Quantitative model for genome-wide cyclic AMP receptor protein binding site identification and characteristic analysis. Briefings Bioinform. 24(3) (2023) - [j77]Renfei Ma, Shangfu Li, Wenshuo Li, Lantian Yao, Hsien-Da Huang, Tzong-Yi Lee:
KinasePhos 3.0: Redesign and Expansion of the Prediction on Kinase-specific Phosphorylation Sites. Genom. Proteom. Bioinform. 21(1): 228-241 (2023) - 2022
- [j76]Qiyang Wu, Tianyang Huang, Songyan Xia, Frank Otto, Tzong-Yi Lee, Hsien-Da Huang, Ying-Chih Chiang:
On the force field optimisation of β-lactam cores using the force field Toolkit. J. Comput. Aided Mol. Des. 36(7): 537-547 (2022) - [j75]Yigang Chen, Lantian Yao, Yun Tang, Jhih-Hua Jhong, Jingting Wan, Jingyue Chang, Shi-Dong Cui, Yijun Luo, Xiao-Xuan Cai, Wenshuo Li, Qi Chen, Hsi-Yuan Huang, Zhuo Wang, Weiming Chen, Tzu-Hao Chang, Feng-Xiang Wei, Tzong-Yi Lee, Hsien-Da Huang:
CircNet 2.0: an updated database for exploring circular RNA regulatory networks in cancers. Nucleic Acids Res. 50(D1): 93-101 (2022) - [j74]Hsi-Yuan Huang, Yang-Chi-Dung Lin, Shi-Dong Cui, Yixian Huang, Yun Tang, Jia-Tong Xu, Jiayang Bao, Yulin Li, Jia Wen, Hua-Li Zuo, Weijuan Wang, Jing Li, Jie Ni, Yini Ruan, Liping Li, Yidan Chen, Yue-Yang Xie, Zihao Zhu, Xiao-Xuan Cai, Xin-Yi Chen, Lantian Yao, Yigang Chen, Yijun Luo, Shupeng Luxu, Mengqi Luo, Chih-Min Chiu, Kun Ma, Lizhe Zhu, Gui-Juan Cheng, Chen Bai, Ying-Chih Chiang, Liping Wang, Feng-Xiang Wei, Tzong-Yi Lee, Hsien-Da Huang:
miRTarBase update 2022: an informative resource for experimentally validated miRNA-target interactions. Nucleic Acids Res. 50(D1): 222-230 (2022) - [j73]Zhongyan Li, Shangfu Li, Mengqi Luo, Jhih-Hua Jhong, Wenshuo Li, Lantian Yao, Yuxuan Pang, Zhuo Wang, Rulan Wang, Renfei Ma, Jinhan Yu, Yuqi Huang, Xiaoning Zhu, Qifan Cheng, Hexiang Feng, Jiahong Zhang, Chunxuan Wang, Justin Bo-Kai Hsu, Wen-Chi Chang, Feng-Xiang Wei, Hsien-Da Huang, Tzong-Yi Lee:
dbPTM in 2022: an updated database for exploring regulatory networks and functional associations of protein post-translational modifications. Nucleic Acids Res. 50(D1): 471-479 (2022) - 2021
- [j72]Hsi-Yuan Huang, Jing Li, Yun Tang, Yixian Huang, Yigang Chen, Yue-Yang Xie, Zhe-Yuan Zhou, Xin-Yi Chen, Si-Yuan Ding, Meng-Fan Luo, Chen-Nan Jin, Le-Shan Zhao, Jia-Tong Xu, Ying Zhou, Yang-Chi-Dung Lin, Hsiao-Chin Hong, Hua-Li Zuo, Si-Yao Hu, Pei-Yi Xu, Xin Li, Hsien-Da Huang:
MethHC 2.0: information repository of DNA methylation and gene expression in human cancer. Nucleic Acids Res. 49(Database-Issue): D1268-D1275 (2021) - 2020
- [j71]Yang-Chi-Dung Lin, Hsi-Yuan Huang, Sirjana Shrestha, Chih-Hung Chou, Yen-Hua Chen, Chi-Ru Chen, Hsiao-Chin Hong, Jing Li, Yi-An Chang, Men-Yee Chiew, Ya-Rong Huang, Siang-Jyun Tu, Ting-Hsuan Sun, Shun-Long Weng, Ching-Ping Tseng, Hsien-Da Huang:
Multi-omics profiling reveals microRNA-mediated insulin signaling networks. BMC Bioinform. 21-S(13): 389 (2020) - [j70]Hsi-Yuan Huang, Yang-Chi-Dung Lin, Jing Li, Kai-Yao Huang, Sirjana Shrestha, Hsiao-Chin Hong, Yun Tang, Yigang Chen, Chen-Nan Jin, Yuan Yu, Jia-Tong Xu, Yue-Ming Li, Xiao-Xuan Cai, Zhen-Yu Zhou, Xiao-Hang Chen, Yuan-Yuan Pei, Liang Hu, Jin-Jiang Su, Shi-Dong Cui, Fei Wang, Yue-Yang Xie, Si-Yuan Ding, Meng-Fan Luo, Chih-Hung Chou, Nai-Wen Chang, Kai-Wen Chen, Yu-Hsiang Cheng, Xin-Hong Wan, Wen-Lian Hsu, Tzong-Yi Lee, Feng-Xiang Wei, Hsien-Da Huang:
miRTarBase 2020: updates to the experimentally validated microRNA?target interaction database. Nucleic Acids Res. 48(Database-Issue): D148-D154 (2020)
2010 – 2019
- 2019
- [j69]Chengyu Liu, Yu-Chen Liu, Hsien-Da Huang, Wei Wang:
Biogenesis mechanisms of circular RNA can be categorized through feature extraction of a machine learning model. Bioinform. 35(23): 4867-4870 (2019) - [j68]Kai-Yao Huang, Tzong-Yi Lee, Hui-Ju Kao, Chen-Tse Ma, Chao-Chun Lee, Tsai-Hsuan Lin, Wen-Chi Chang, Hsien-Da Huang:
dbPTM in 2019: exploring disease association and cross-talk of post-translational modifications. Nucleic Acids Res. 47(Database-Issue): D298-D308 (2019) - 2018
- [j67]Chih-Hung Chou, Hsi-Yuan Huang, Wei-Chih Huang, Sheng-Da Hsu, Chung-Der Hsiao, Chia-Yu Liu, Yu-Hung Chen, Yu-Chen Liu, Wei-Yun Huang, Meng-Lin Lee, Yi-Chang Chen, Hsien-Da Huang:
The aquatic animals' transcriptome resource for comparative functional analysis. BMC Genom. 19(S2) (2018) - [j66]Yu-Chen Liu, Hsiao-Chin Hong, Chi-Dung Yang, Wei-Hsiang Lee, Hsin-Tzu Huang, Hsien-Da Huang:
Ouroboros resembling competitive endogenous loop (ORCEL) in circular RNAs revealed through transcriptome sequencing dataset analysis. BMC Genom. 19(S2) (2018) - [j65]Wei-Hsiang Kung, Andy Chi-Lung Lee, Chi-Dung Yang, Ching-Fang Yu, Men-Yee Chiew, Fang-Hsin Chen, Hsien-Da Huang:
Integrated microRNA and mRNA expression profile analysis of tumor-associated macrophages after exposure to single-dose irradiation. Comput. Biol. Chem. 74: 368-378 (2018) - [j64]Chih-Hung Chou, Sirjana Shrestha, Chi-Dung Yang, Nai-Wen Chang, Yu-Ling Lin, Kuang-Wen Liao, Wei-Chih Huang, Ting-Hsuan Sun, Siang-Jyun Tu, Wei-Hsiang Lee, Men-Yee Chiew, Chun-San Tai, Ting-Yen Wei, Tzi-Ren Tsai, Hsin-Tzu Huang, Chung-Yu Wang, Hsin-Yi Wu, Shu-Yi Ho, Pin-Rong Chen, Cheng-Hsun Chuang, Pei-Jung Hsieh, Yi-Shin Wu, Wen-Liang Chen, Meng-Ju Li, Yu-chun Wu, Xin-Yi Huang, Fung Ling Ng, Waradee Buddhakosai, Pei-Chun Huang, Kuan-Chun Lan, Chia-Yen Huang, Shun-Long Weng, Yeong-Nan Cheng, Chao Liang, Wen-Lian Hsu, Hsien-Da Huang:
miRTarBase update 2018: a resource for experimentally validated microRNA-target interactions. Nucleic Acids Res. 46(Database-Issue): D296-D302 (2018) - 2017
- [j63]Yu-Chen Liu, Wen Liang Chen, Wei-Hsiang Kung, Hsien-Da Huang:
Plant miRNAs found in human circulating system provide evidences of cross kingdom RNAi. BMC Genom. 18(S2) (2017) - [j62]Wei-Hsiang Kung, Ching-Fang Yu, Andy Chi-Lung Lee, Chi-Dung Yang, Yu-Chen Liu, Fang-Hsin Chen, Hsien-Da Huang:
Gene expression profiling of tumor-associated macrophages after exposure to single-dose irradiation. Comput. Biol. Chem. 69: 138-146 (2017) - 2016
- [j61]Richie Ruei-Chi Gan, Ting-Wen Chen, Timothy H. Wu, Po-Jung Huang, Chi-Ching Lee, Yuan-Ming Yeh, Cheng-Hsun Chiu, Hsien-Da Huang, Petrus Tang:
PARRoT- a homology-based strategy to quantify and compare RNA-sequencing from non-model organisms. BMC Bioinform. 17(S-19): 149-158 (2016) - [j60]Yu-Chen Liu, Sheng-Da Hsu, Chih-Hung Chou, Wei-Yun Huang, Yu-Hung Chen, Chia-Yu Liu, Guan-Jay Lyu, Shao-Zhen Huang, Sergey Aganezov Jr., Max A. Alekseyev, Chung-Der Hsiao, Hsien-Da Huang:
Transcriptome sequencing based annotation and homologous evidence based scaffolding of Anguilla japonica draft genome. BMC Genom. 17(S-1): 13 (2016) - [j59]Yu-Chen Liu, Jianrong Li, Chuan-Hu Sun, Erik Andrews, Rou-Fang Chao, Feng-Mao Lin, Shun-Long Weng, Sheng-Da Hsu, Chieh-Chen Huang, Chao Cheng, Chun-Chi Liu, Hsien-Da Huang:
CircNet: a database of circular RNAs derived from transcriptome sequencing data. Nucleic Acids Res. 44(Database-Issue): 209-215 (2016) - [j58]Chih-Hung Chou, Nai-Wen Chang, Sirjana Shrestha, Sheng-Da Hsu, Yu-Ling Lin, Wei-Hsiang Lee, Chi-Dung Yang, Hsiao-Chin Hong, Ting-Yen Wei, Siang-Jyun Tu, Tzi-Ren Tsai, Shu-Yi Ho, Ting-Yan Jian, Hsin-Yi Wu, Pin-Rong Chen, Nai-Chieh Lin, Hsin-Tzu Huang, Tzu-Ling Yang, Chung-Yuan Pai, Chun-San Tai, Wen-Liang Chen, Chia-Yen Huang, Chun-Chi Liu, Shun-Long Weng, Kuang-Wen Liao, Wen-Lian Hsu, Hsien-Da Huang:
miRTarBase 2016: updates to the experimentally validated miRNA-target interactions database. Nucleic Acids Res. 44(Database-Issue): 239-247 (2016) - [j57]Kai-Yao Huang, Min-Gang Su, Hui-Ju Kao, Yun-Chung Hsieh, Jhih-Hua Jhong, Kuang-Hao Cheng, Hsien-Da Huang, Tzong-Yi Lee:
dbPTM 2016: 10-year anniversary of a resource for post-translational modification of proteins. Nucleic Acids Res. 44(Database-Issue): 435-446 (2016) - [j56]Chi-Nga Chow, Han-Qin Zheng, Nai-Yun Wu, Chia-Hung Chien, Hsien-Da Huang, Tzong-Yi Lee, Yi-Fan Chiang-Hsieh, Ping-Fu Hou, Tien-Yi Yang, Wen-Chi Chang:
PlantPAN 2.0: an update of plant promoter analysis navigator for reconstructing transcriptional regulatory networks in plants. Nucleic Acids Res. 44(Database-Issue): 1154-1160 (2016) - 2015
- [j55]Yi-Hsiung Chen, Chi-Dung Yang, Ching-Ping Tseng, Hsien-Da Huang, Shinn-Ying Ho:
GeNOSA: inferring and experimentally supporting quantitative gene regulatory networks in prokaryotes. Bioinform. 31(13): 2151-2158 (2015) - [j54]Hsien-Da Huang, Yi-Ping Phoebe Chen:
Editorial. Comput. Biol. Chem. 57: 1-2 (2015) - [j53]Wei-Yun Huang, Sheng-Da Hsu, Hsi-Yuan Huang, Yi-Ming Sun, Chih-Hung Chou, Shun-Long Weng, Hsien-Da Huang:
MethHC: a database of DNA methylation and gene expression in human cancer. Nucleic Acids Res. 43(Database-Issue): 856-861 (2015) - [j52]Hsien-Da Huang, Yi-Ping Phoebe Chen:
Guest Editorial for the 13th Asia Pacific Bioinformatics Conference. IEEE ACM Trans. Comput. Biol. Bioinform. 12(6): 1217-1218 (2015) - 2014
- [j51]Kai-Yao Huang, Hsin-Yi Wu, Yi-Ju Chen, Cheng-Tsung Lu, Min-Gang Su, Yun-Chung Hsieh, Chih-Ming Tsai, Kuo-I Lin, Hsien-Da Huang, Tzong-Yi Lee, Yu-Ju Chen:
RegPhos 2.0: an updated resource to explore protein kinase-substrate phosphorylation networks in mammals. Database J. Biol. Databases Curation 2014 (2014) - [j50]Wen-Ling Chan, Hsien-Da Huang, Jan-Gowth Chang:
lncRNAMap: A map of putative regulatory functions in the long non-coding transcriptome. Comput. Biol. Chem. 50: 41-49 (2014) - [j49]Chih-Min Chiu, Feng-Mao Lin, Tzu-Hao Chang, Wei-Chih Huang, Chao Liang, Ting Yang, Wei-Yun Wu, Tzu-Ling Yang, Shun-Long Weng, Hsien-Da Huang:
Clinical detection of human probiotics and human pathogenic bacteria by using a novel high-throughput platform based on next generation sequencing. J. Clin. Bioinform. 4: 1 (2014) - [j48]Sheng-Da Hsu, Yu-Ting Tseng, Sirjana Shrestha, Yu-Ling Lin, Anas Khaleel, Chih-Hung Chou, Chao-Fang Chu, Hsi-Yuan Huang, Ching-Min Lin, Shu-Yi Ho, Ting-Yan Jian, Feng-Mao Lin, Tzu-Hao Chang, Shun-Long Weng, Kuang-Wen Liao, I-En Liao, Chun-Chi Liu, Hsien-Da Huang:
miRTarBase update 2014: an information resource for experimentally validated miRNA-target interactions. Nucleic Acids Res. 42(Database-Issue): 78-85 (2014) - 2013
- [j47]Wen-Ling Chan, Wen-Kuang Yang, Hsien-Da Huang, Jan-Gowth Chang:
pseudoMap: an innovative and comprehensive resource for identification of siRNA-mediated mechanisms in human transcribed pseudogenes. Database J. Biol. Databases Curation 2013 (2013) - [j46]Tzu-Hao Chang, Hsi-Yuan Huang, Justin Bo-Kai Hsu, Shun-Long Weng, Jorng-Tzong Horng, Hsien-Da Huang:
An enhanced computational platform for investigating the roles of regulatory RNA and for identifying functional RNA motifs. BMC Bioinform. 14(S-2): S4 (2013) - [j45]Chih-Hung Chou, Feng-Mao Lin, Min-Te Chou, Sheng-Da Hsu, Tzu-Hao Chang, Shun-Long Weng, Sirjana Shrestha, Chiung-Chih Hsiao, Jui-Hung Hung, Hsien-Da Huang:
A computational approach for identifying microRNA-target interactions using high-throughput CLIP and PAR-CLIP sequencing. BMC Genom. 14(S-1): S2 (2013) - [j44]Tzu-Hao Chang, Li-Ching Wu, Tzong-Yi Lee, Shu-Pin Chen, Hsien-Da Huang, Jorng-Tzong Horng:
EuLoc: a web-server for accurately predict protein subcellular localization in eukaryotes by incorporating various features of sequence segments into the general form of Chou's PseAAC. J. Comput. Aided Mol. Des. 27(1): 91-103 (2013) - [j43]Cheng-Tsung Lu, Kai-Yao Huang, Min-Gang Su, Tzong-Yi Lee, Neil Arvin Bretaña, Wen-Chi Chang, Yi-Ju Chen, Yu-Ju Chen, Hsien-Da Huang:
dbPTM 3.0: an informative resource for investigating substrate site specificity and functional association of protein post-translational modifications. Nucleic Acids Res. 41(Database-Issue): 295-305 (2013) - [c13]Chih-Min Chiu, Feng-Mao Lin, Tzu-Hao Chang, Wei-Chih Huang, Chao Liang, Wei-Yun Wu, Tzu-Ling Yang, Shun-Long Weng, Hsien-Da Huang:
Clinical detection of human probiotics and human pathogenic bacteria by using a novel high-throughput platform based on next generation sequencing. IWBBIO 2013: 29-40 - 2012
- [j42]Tzong-Yi Lee, Yi-Ju Chen, Cheng-Tsung Lu, Wei-Chieh Ching, Yu-Chuan Teng, Hsien-Da Huang, Yu-Ju Chen:
dbSNO: a database of cysteine S-nitrosylation. Bioinform. 28(17): 2293-2295 (2012) - [j41]Wei-Chih Huang, Feng-Mao Lin, Tzu-Hao Chang, Kuang-Wen Liao, Hsien-Da Huang:
Identifying cancer highly-expressed membrane receptors for targeted drug delivery. Int. J. Bioinform. Res. Appl. 8(3/4): 192-209 (2012) - 2011
- [j40]Justin Bo-Kai Hsu, Chih-Min Chiu, Sheng-Da Hsu, Wei-Yun Huang, Chia-Hung Chien, Tzong-Yi Lee, Hsien-Da Huang:
miRTar: an integrated system for identifying miRNA-target interactions in Human. BMC Bioinform. 12: 300 (2011) - [j39]Tzu-Hao Chang, Li-Ching Wu, Yu-Ting Chen, Hsien-Da Huang, Baw-Jhiune Liu, Kuang-Fu Cheng, Jorng-Tzong Horng:
Characterization and prediction of mRNA polyadenylation sites in human genes. Medical Biol. Eng. Comput. 49(4): 463-472 (2011) - [j38]Sheng-Da Hsu, Feng-Mao Lin, Wei-Yun Wu, Chao Liang, Wei-Chih Huang, Wen-Ling Chan, Wen-Ting Tsai, Goun-Zhou Chen, Chia-Jung Lee, Chih-Min Chiu, Chia-Hung Chien, Ming-Chia Wu, Chi-Ying F. Huang, Ann-Ping Tsou, Hsien-Da Huang:
miRTarBase: a database curates experimentally validated microRNA-target interactions. Nucleic Acids Res. 39(Database-Issue): 163-169 (2011) - [j37]Tzong-Yi Lee, Justin Bo-Kai Hsu, Wen-Chi Chang, Hsien-Da Huang:
RegPhos: a system to explore the protein kinase-substrate phosphorylation network in humans. Nucleic Acids Res. 39(Database-Issue): 777-787 (2011) - 2010
- [j36]Li-Ching Wu, Jhih-Long Huang, Jorng-Tzong Horng, Hsien-Da Huang:
An expert system to identify co-regulated gene groups from time-lagged gene clusters using cell cycle expression data. Expert Syst. Appl. 37(3): 2202-2213 (2010) - [j35]Tzu-Hao Chang, Li-Ching Wu, Jun-Hong Lin, Hsien-Da Huang, Baw-Jhiune Liu, Kuang-Fu Cheng, Jorng-Tzong Horng:
Prediction of small non-coding RNA in bacterial genomes using support vector machines. Expert Syst. Appl. 37(8): 5549-5557 (2010) - [j34]Tzong-Yi Lee, Justin Bo-Kai Hsu, Feng-Mao Lin, Wen-Chi Chang, Po-Chiang Hsu, Hsien-Da Huang:
N-Ace: Using solvent accessibility and physicochemical properties to identify protein N-acetylation sites. J. Comput. Chem. 31(15): 2759-2771 (2010)
2000 – 2009
- 2009
- [j33]Wei-Chi Wang, Feng-Mao Lin, Wen-Chi Chang, Kuan-Yu Lin, Hsien-Da Huang, Na-Sheng Lin:
miRExpress: Analyzing high-throughput sequencing data for profiling microRNA expression. BMC Bioinform. 10: 328 (2009) - [j32]Li-Ching Wu, Hsien-Da Huang, Yu-Chung Chang, Ying-Chun Lee, Jorng-Tzong Horng:
Detecting LTR structures in human genomic sequences using profile hidden Markov models. Expert Syst. Appl. 36(1): 668-674 (2009) - [j31]Li-Cheng Wu, Jian-Xin Lee, Hsien-Da Huang, Baw-Juine Liu, Jorng-Tzong Horng:
An expert system to predict protein thermostability using decision tree. Expert Syst. Appl. 36(5): 9007-9014 (2009) - [j30]Dray-Ming Shien, Tzong-Yi Lee, Wen-Chi Chang, Justin Bo-Kai Hsu, Jorng-Tzong Horng, Po-Chiang Hsu, Ting-Yuan Wang, Hsien-Da Huang:
Incorporating structural characteristics for identification of protein methylation sites. J. Comput. Chem. 30(9): 1532-1543 (2009) - [j29]Wen-Chi Chang, Tzong-Yi Lee, Dray-Ming Shien, Justin Bo-Kai Hsu, Jorng-Tzong Horng, Po-Chiang Hsu, Ting-Yuan Wang, Hsien-Da Huang, Rong-Long Pan:
Incorporating support vector machine for identifying protein tyrosine sulfation sites. J. Comput. Chem. 30(15): 2526-2537 (2009) - [j28]Hsi-Yuan Huang, Heng-Yi Chang, Chih-Hung Chou, Ching-Ping Tseng, Shinn-Ying Ho, Chi-Dung Yang, Yih-Wei Ju, Hsien-Da Huang:
sRNAMap: genomic maps for small non-coding RNAs, their regulators and their targets in microbial genomes. Nucleic Acids Res. 37(Database-Issue): 150-154 (2009) - [j27]Chih-Hung Chou, Wen-Chi Chang, Chih-Min Chiu, Chih-Chang Huang, Hsien-Da Huang:
FMM: a web server for metabolic pathway reconstruction and comparative analysis. Nucleic Acids Res. 37(Web-Server-Issue): 129-134 (2009) - [c12]Yi-Ming Sun, Wei-Li Liao, Hsien-Da Huang, Baw-Jhiune Liu, Cheng-Wei Chang, Jorng-Tzong Horng, Li-Ching Wu:
A Human DNA Methylation Site Predictor Based on SVM. BIBE 2009: 22-29 - [c11]Tzu-Hao Chang, Li-Ching Wu, Chi-Ta Yeh, Cheng-Wei Chang, Baw-Jhiune Liu, Hsien-Da Huang, Jorng-Tzong Horng:
RiboSW . BIBE 2009: 260-265 - 2008
- [j26]Sheng-Da Hsu, Chia-Huei Chu, Ann-Ping Tsou, Shu-Jen Chen, Hua-Chien Chen, Paul Wei-Che Hsu, Yung-Hao Wong, Yi-Hsuan Chen, Gian-Hung Chen, Hsien-Da Huang:
miRNAMap 2.0: genomic maps of microRNAs in metazoan genomes. Nucleic Acids Res. 36(Database-Issue): 165-169 (2008) - [j25]Tzu-Hao Chang, Jorng-Tzong Horng, Hsien-Da Huang:
RNALogo: a new approach to display structural RNA alignment. Nucleic Acids Res. 36(Web-Server-Issue): 91-96 (2008) - [j24]Li-Ching Wu, Jorng-Tzong Horng, Hsien-Da Huang, Wei-Long Chen:
Identifying Discriminative Amino Acids Within the Hemagglutinin of Human Influenza A H5N1 Virus Using a Decision Tree. IEEE Trans. Inf. Technol. Biomed. 12(6): 689-695 (2008) - 2007
- [j23]Paul Wei-Che Hsu, Li-Zen Lin, Sheng-Da Hsu, Justin Bo-Kai Hsu, Hsien-Da Huang:
ViTa: prediction of host microRNAs targets on viruses. Nucleic Acids Res. 35(Database-Issue): 381-385 (2007) - [j22]Yung-Hao Wong, Tzong-Yi Lee, Han-Kuen Liang, Chia-Mao Huang, Ting-Yuan Wang, Yi-Huan Yang, Chia-Huei Chu, Hsien-Da Huang, Ming-Tat Ko, Jenn-Kang Hwang:
KinasePhos 2.0: a web server for identifying protein kinase-specific phosphorylation sites based on sequences and coupling patterns. Nucleic Acids Res. 35(Web-Server-Issue): 588-594 (2007) - [j21]Li-Cheng Wu, Jorng-Tzong Horng, Hsi-Yuan Huang, Feng-Mao Lin, Hsien-Da Huang, Meng-Feng Tsai:
Primer design for multiplex PCR using a genetic algorithm. Soft Comput. 11(9): 855-863 (2007) - 2006
- [j20]Li-Cheng Wu, Jorng-Tzong Horng, Shir-Ly Huang, Hsien-Da Huang, Baw-Jhiune Liu:
Detection of discriminative sequence motifs in proteins obtained from prokaryotes grown at various temperatures. J. Comput. Chem. 27(6): 798-808 (2006) - [j19]Tzong-Yi Lee, Jorng-Tzong Horng, Hsueh-Fen Juan, Hsien-Da Huang, Li-Cheng Wu, Meng-Feng Tsai, Hsuan-Cheng Huang:
An agent-based system to discover protein-protein interactions, identify protein complexes and proteins with multiple peptide mass fingerprints. J. Comput. Chem. 27(9): 1020-1032 (2006) - [j18]Paul Wei-Che Hsu, Hsien-Da Huang, Sheng-Da Hsu, Li-Zen Lin, Ann-Ping Tsou, Ching-Ping Tseng, Peter F. Stadler, Stefan Washietl, Ivo L. Hofacker:
miRNAMap: genomic maps of microRNA genes and their target genes in mammalian genomes. Nucleic Acids Res. 34(Database-Issue): 135-139 (2006) - [j17]Tzong-Yi Lee, Hsien-Da Huang, Jui-Hung Hung, Hsi-Yuan Huang, Yuh-Shyong Yang, Tzu-Hao Wang:
dbPTM: an information repository of protein post-translational modification. Nucleic Acids Res. 34(Database-Issue): 622-627 (2006) - [j16]Jui-Hung Hung, Hsien-Da Huang, Tzong-Yi Lee:
ProKware: integrated software for presenting protein structural properties in protein tertiary structures. Nucleic Acids Res. 34(Web-Server-Issue): 89-94 (2006) - [j15]Tzu-Hao Chang, Hsien-Da Huang, Tzu-Neng Chuang, Dray-Ming Shien, Jorng-Tzong Horng:
RNAMST: efficient and flexible approach for identifying RNA structural homologs. Nucleic Acids Res. 34(Web-Server-Issue): 423-428 (2006) - [j14]Hsi-Yuan Huang, Chia-Hung Chien, Kuan-Hua Jen, Hsien-Da Huang:
RegRNA: an integrated web server for identifying regulatory RNA motifs and elements. Nucleic Acids Res. 34(Web-Server-Issue): 429-434 (2006) - [j13]Ann-Ping Tsou, Yi-Ming Sun, Chia-Lin Liu, Hsien-Da Huang, Jorng-Tzong Horng, Meng-Feng Tsai, Baw-Jhiune Liu:
Biological Data Warehousing System for Identifying Transcriptional Regulatory Sites From Gene Expressions of Microarray Data. IEEE Trans. Inf. Technol. Biomed. 10(3): 550-558 (2006) - [j12]Feng-Mao Lin, Hsien-Da Huang, Y.-C. Chang, Ann-Ping Tsou, P.-L. Chan, L.-C. Wu, Meng-Feng Tsai, Jorng-Tzong Horng:
Database to Dynamically Aid Probe Design for Virus Identification. IEEE Trans. Inf. Technol. Biomed. 10(4): 705-713 (2006) - 2005
- [j11]Hsien-Da Huang, Jorng-Tzong Horng, Li-Cheng Wu, Shu-Fen Fang:
Discovering Common Structural Motifs of Ribosomal Rna Secondary Structures in Prokaryotes. Int. J. Artif. Intell. Tools 14(4): 621-640 (2005) - [j10]Hsien-Da Huang, Tzong-Yi Lee, Shih-Wei Tzeng, Li-Cheng Wu, Jorng-Tzong Horng, Ann-Ping Tsou, Kuan-Tsae Huang:
Incorporating hidden Markov models for identifying protein kinase-specific phosphorylation sites. J. Comput. Chem. 26(10): 1032-1041 (2005) - [j9]Hsien-Da Huang, Jorng-Tzong Horng, Feng-Mao Lin, Yu-Chung Chang, Chen-Chia Huang:
SpliceInfo: an information repository for mRNA alternative splicing in human genome. Nucleic Acids Res. 33(Database-Issue): 80-85 (2005) - [j8]Hsien-Da Huang, Tzong-Yi Lee, Shih-Wei Tzeng, Jorng-Tzong Horng:
KinasePhos: a web tool for identifying protein kinase-specific phosphorylation sites. Nucleic Acids Res. 33(Web-Server-Issue): 226-229 (2005) - [c10]Feng-Mao Lin, Hsien-Da Huang, Yu-Chung Chang, Pak-Leong Chan, Jorng-Tzong Horng, Ming-Tat Ko:
A database to aid probe design for virus identification. APBC 2005: 309-318 - [c9]Feng-Mao Lin, Hsien-Da Huang, Hsi-Yuan Huang, Jorng-Tzong Horng:
Primer design for multiplex PCR using a genetic algorithm. GECCO 2005: 475-476 - 2004
- [j7]Hsien-Da Huang, Jorng-Tzong Horng, Chia-Hui Chang, Tsung-Shan Tsou, Jing-Yue Hong, Baw-Jhiune Liu:
A Computational Approach to Discover Differential Cooperation of Regulartory Sites in Functionally Related Genes in Yeast Genome. J. Inf. Sci. Eng. 20(6): 1141-1159 (2004) - [j6]Jorng-Tzong Horng, Kai-Chih Hu, Li-Cheng Wu, Hsien-Da Huang, Feng-Mao Lin, Shir-Ly Huang, Horn-Cheng Lai, Ton-Yuen Chu:
Identifying the combination of genetic factors that determine susceptibility to cervical cancer. IEEE Trans. Inf. Technol. Biomed. 8(1): 59-66 (2004) - [c8]Jorng-Tzong Horng, Kai-Chih Hu, Li-Cheng Wu, Hsien-Da Huang, Horn-Cheng Lai, Ton-Yuen Chu:
Identifying the Combination of Genetic Factors that Determine Susceptibility to Cervical Cancer. BIBE 2004: 325-332 - [c7]Yi-Ming Sun, Hsien-Da Huang, Jorng-Tzong Horng, Shir-Ly Huang, Ann-Ping Tsou:
RgS-Miner: A Biological Data Warehousing, Analyzing and Mining System for Identifying Transcriptional Regulatory Sites in Human Genome. DEXA 2004: 751-760 - [c6]Hsien-Da Huang, Jorng-Tzong Horng, Yi-Ming Sun, Ann-Ping Tsou, Shir-Ly Huang:
Identifying Transcriptional Regulatory Sites in the Human Genome Using an Integrated Computation. ISPAN 2004: 637-642 - 2003
- [j5]Jorng-Tzong Horng, Hsien-Da Huang, Shih-Hsien Wang, Ming-You Chen, Shir-Ly Huang, Jenn-Kang Hwang:
Computing motif correlations in proteins. J. Comput. Chem. 24(16): 2032-2043 (2003) - [j4]Hsien-Da Huang, Huei-Lin Chang, Tsung-Shan Tsou, Baw-Jhiune Liu, Jorng-Tzong Horng:
A Data Mining Method to Predict Transcriptional Regulatory Sites Based Based on Differentially Expressed Genes in Human Genome. J. Inf. Sci. Eng. 19(6): 923-942 (2003) - [j3]Jorng-Tzong Horng, Feng-Mao Lin, J. H. Lin, Hsien-Da Huang, Baw-Jhiune Liu:
Database of repetitive elements in complete genomes and data mining using transcription factor binding sites. IEEE Trans. Inf. Technol. Biomed. 7(2): 93-100 (2003) - [c5]Hsien-Da Huang, Huei-Lin Chang, Tsung-Shan Tsou, Baw-Jhiune Liu, Cheng-Yan Kao, Jorng-Tzong Horng:
A Data Mining Method to Predict Transcriptional Regulatory Sites Based on Differentially Expressed Genes in Human Genome. BIBE 2003: 297-304 - 2002
- [j2]Jorng-Tzong Horng, Hsien-Da Huang, Shir-Ly Huang, Ueng-Cheng Yang, Yu-Chang Chang:
Mining putative regulatory elements in gene promoter regions of Saccharomyces cerevisiae. Silico Biol. 2(3): 263-273 (2002) - [j1]Jorng-Tzong Horng, Hsien-Da Huang, Ming-Hui Jin, Li-Cheng Wu, Shir-Ly Huang:
The Repetitive Sequence Database and Mining Putative Regulatory Elements in Gene Promoter Regions. J. Comput. Biol. 9(4): 621-640 (2002) - [c4]Jih Tsung Yang, Hsien-Da Huang, Jorng-Tzong Horng:
Devising a cost effective baseball scheduling by evolutionary algorithms. IEEE Congress on Evolutionary Computation 2002: 1660-1665 - 2001
- [c3]Hsien-Da Huang, Shu-Fen Fang, Jorng-Tzong Horng, Cheng-Yan Kao:
Discovering Common Structural Motifs from SSU 16 S Ribosomal RNA Secondary Structures. BIBE 2001: 104-111 - [c2]Jorng-Tzong Horng, Hsien-Da Huang, Cho-Chun Huang, Cheng-Yan Kao:
Mining Putative Regulatory Elements in Gene Promoter Regions. German Conference on Bioinformatics 2001: 90-95 - [c1]Hsien-Da Huang, Shu-Fen Fang, Jorng-Tzong Horng:
Mining Combinations of Structural Motif from SSU 16 S Ribosomal RNA Secondary Structures. German Conference on Bioinformatics 2001: 170-173
Coauthor Index
manage site settings
To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.
Unpaywalled article links
Add open access links from 
to the list of external document links (if available).
Privacy notice: By enabling the option above, your browser will contact the API of unpaywall.org to load hyperlinks to open access articles. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Unpaywall privacy policy.
Archived links via Wayback Machine
For web page which are no longer available, try to retrieve content from the 
of the Internet Archive (if available).
Privacy notice: By enabling the option above, your browser will contact the API of archive.org to check for archived content of web pages that are no longer available. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Internet Archive privacy policy.
Reference lists
Add a list of references from 
, 
, and 
to record detail pages.
load references from crossref.org and opencitations.net
Privacy notice: By enabling the option above, your browser will contact the APIs of crossref.org, opencitations.net, and semanticscholar.org to load article reference information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Crossref privacy policy and the OpenCitations privacy policy, as well as the AI2 Privacy Policy covering Semantic Scholar.
Citation data
Add a list of citing articles from and to record detail pages.
load citations from opencitations.net
Privacy notice: By enabling the option above, your browser will contact the API of opencitations.net and semanticscholar.org to load citation information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the OpenCitations privacy policy as well as the AI2 Privacy Policy covering Semantic Scholar.
OpenAlex data
Load additional information about publications from 
.
Privacy notice: By enabling the option above, your browser will contact the API of openalex.org to load additional information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the information given by OpenAlex.
last updated on 2025-01-09 13:06 CET by the dblp team
all metadata released as open data under CC0 1.0 license
see also: Terms of Use | Privacy Policy | Imprint
dblp was originally created in 1993 at:
since 2018, dblp has been operated and maintained by:
the dblp computer science bibliography is funded and supported by:
