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ORCIDJan Komorowski
Henryk Jan Komorowski
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- affiliation: Uppsala University, Sweden
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2020 – today
- 2023
[j31]Salvador Daniel Rivas-Carrillo, Evgeny E. Akkuratov
, Hector Valdez Ruvalcaba, Angel Vargas-Sanchez, Jan Komorowski, Daniel San-Juan, Manfred G. Grabherr:
MindReader: Unsupervised Classification of Electroencephalographic Data. Sensors 23(6): 2971 (2023)- 2021
- [j30]Mateusz Garbulowski, Klev Diamanti, Karolina Smolinska, Nicholas Baltzer, Patricia Stoll, Susanne Bornelöv, Aleksander Øhrn, Lars Feuk, Jan Komorowski:
R.ROSETTA: an interpretable machine learning framework. BMC Bioinform. 22(1): 110 (2021) - 2020
- [j29]Esther Rheinbay, Morten Muhlig Nielsen, Federico Abascal, Jeremiah Wala, Ofer Shapira, Grace Tiao, Henrik Hornshøj, Julian M. Hess, Randi Istrup Juul, Ziao Lin, Lars Feuerbach, Radhakrishnan Sabarinathan, Tobias Madsen, Jaegil Kim, Loris Mularoni, Shimin Shuai, Andrés Lanzós, Carl Herrmann, Yosef E. Maruvka, Ciyue Shen, Samirkumar B. Amin, Pratiti Bandopadhayay, Johanna Bertl, Keith A. Boroevich, John Busanovich, Joana Carlevaro-Fita, Dimple Chakravarty, Calvin Wing Yiu Chan, David Craft, Priyanka Dhingra, Klev Diamanti, Nuno A. Fonseca, Abel Gonzalez-Perez, Qianyun Guo, Mark P. Hamilton, Nicholas J. Haradhvala, Chen Hong, Keren Isaev, Todd A. Johnson, Malene Juul, André Kahles, Abdullah Kahraman, Youngwook Kim, Jan Komorowski, Kiran Kumar, Sushant Kumar, Donghoon Lee, Kjong-Van Lehmann, Yilong Li, Eric Minwei Liu, Lucas Lochovsky, Keunchil Park, Oriol Pich, Nicola D. Roberts, Gordon Saksena, Steven E. Schumacher, Nikos Sidiropoulos, Lina Sieverling, Nasa Sinnott-Armstrong, Chip Stewart, David Tamborero, Jose M. C. Tubio, Husen M. Umer, Liis Uusküla-Reimand, Claes Wadelius, Lina Wadi, Xiaotong Yao, Cheng-Zhong Zhang, Jing Zhang, James E. Haber, Asger Hobolth, Marcin Imielinski, Manolis Kellis, Michael S. Lawrence, Christian von Mering, Hidewaki Nakagawa, Benjamin J. Raphael, Mark A. Rubin, Chris Sander, Lincoln D. Stein, Joshua M. Stuart, Tatsuhiko Tsunoda, David A. Wheeler, Rory Johnson, Jüri Reimand, Mark Gerstein, Ekta Khurana, Peter J. Campbell, Núria López-Bigas, Gary D. Bader, Jonathan Barenboim, Rameen Beroukhim, Søren Brunak, Ken Chen, Jung Kyoon Choi, Jordi Deu-Pons, J. Lynn Fink, Joan Frigola, Carlo Gambacorti Passerini, Dale W. Garsed, Gad Getz, Ivo Glynne Gut, David Haan, Arif Ozgun Harmanci, Mohamed Helmy, Ermin Hodzic, José M. G. Izarzugaza, Jong K. Kim, Jan O. Korbel, Erik Larsson, Shantao Li, Xiaotong Li, Shaoke Lou, Kathleen Marchal, Iñigo Martincorena, Alexander Martínez-Fundichely, Patrick D. McGillivray, William Meyerson, Ferran Muiños, Marta Paczkowska, Kiejung Park, Jakob Skou Pedersen, Tirso Pons, Sergio Pulido-Tamayo, Iker Reyes-Salazar, Matthew A. Reyna, Carlota Rubio-Perez, Süleyman Cenk Sahinalp, Leonidas Salichos, Mark Shackleton, Raunak Shrestha, Alfonso Valencia, Miguel Vazquez, Lieven P. C. Verbeke, Jiayin Wang, Jonathan Warrell, Sebastian M. Waszak, Joachim Weischenfeldt, Guanming Wu, Jun Yu, Xuanping Zhang, Yan Zhang, Zhongming Zhao, Lihua Zou, Kadir C. Akdemir, Eva G. Alvarez, Adrian Baez-Ortega, Paul C. Boutros, David D. L. Bowtell, Benedikt Brors, Kathleen H. Burns, Kin Chan, Isidro Cortés-Ciriano, Ana Dueso-Barroso, Andrew J. Dunford, Paul A. Edwards, Xavier Estivill, Dariush Etemadmoghadam, Milana Frenkel-Morgenstern, Dmitry A. Gordenin, Barbara Hutter, David T. W. Jones, Young Seok Ju, Marat D. Kazanov, Leszek J. Klimczak, Youngil Koh, Eunjung Alice Lee, Jake June-Koo Lee, Andy G. Lynch, Geoff MacIntyre, Florian Markowetz, Matthew Meyerson, Satoru Miyano, Fabio C. P. Navarro, Stephan Ossowski, Peter J. Park, John V. Pearson, Montserrat Puiggròs, Karsten Rippe, Steven A. Roberts, Bernardo Rodriguez-Martin, Ralph Scully, David Torrents, Izar Villasante, Nicola Waddell, Jeremiah A. Wala, Lixing Yang, Sung-Soo Yoon, Jorge Zamora:
Analyses of non-coding somatic drivers in 2,658 cancer whole genomes. Nat. 578(7793): 102-111 (2020) - [j28]Nicholas Baltzer, Jan Komorowski:
||-ROSETTA. Trans. Rough Sets 22: 8-25 (2020)
2010 – 2019
- 2018
- [c37]Nicholas Baltzer, Mari Nygård, Karin Sundstrom, Joakim Dillner, Jan Nygård, Jan Komorowski:
Stratifying Cervical Cancer Risk with Registry Data. eScience 2018: 288-289 - 2016
- [j27]Behrooz Torabi Moghadam, Michal Dabrowski, Bozena Kaminska, Manfred G. Grabherr, Jan Komorowski:
Combinatorial identification of DNA methylation patterns over age in the human brain. BMC Bioinform. 17: 393 (2016) - [p2]Susanne Bornelöv, Jan Komorowski:
Selection of Significant Features Using Monte Carlo Feature Selection. Challenges in Computational Statistics and Data Mining 2016: 25-38 - 2014
- [j26]Susanne Bornelöv, Simon Marillet, Jan Komorowski:
Ciruvis: a web-based tool for rule networks and interaction detection using rule-based classifiers. BMC Bioinform. 15: 139 (2014) - 2013
- [j25]Marcin Kruczyk, Husen M. Umer, Stefan Enroth, Jan Komorowski:
Peak Finder Metaserver - a novel application for finding peaks in ChIP-seq data. BMC Bioinform. 14: 280 (2013) - [j24]Marcin Kruczyk, Nicholas Baltzer, Jakub Mieczkowski, Michal Draminski, Jacek Koronacki, Jan Komorowski:
Random Reducts: A Monte Carlo Rough Set-based Method for Feature Selection in Large Datasets. Fundam. Informaticae 127(1-4): 273-288 (2013) - 2012
- [j23]Stefan Enroth, Claes R. Andersson, Robin Andersson, Claes Wadelius, Mats G. Gustafsson, Henryk Jan Komorowski:
A strand specific high resolution normalization method for chip-sequencing data employing multiple experimental control measurements. Algorithms Mol. Biol. 7: 2 (2012) - 2010
- [j22]Stefan Enroth, Robin Andersson, Claes Wadelius, Jan Komorowski:
SICTIN: Rapid footprinting of massively parallel sequencing data. BioData Min. 3: 4 (2010) - [p1]Michal Draminski, Marcin Kierczak, Jacek Koronacki, Henryk Jan Komorowski:
Monte Carlo Feature Selection and Interdependency Discovery in Supervised Classification. Advances in Machine Learning II 2010: 371-385
2000 – 2009
- 2009
- [j21]Krzysztof Wabnik, Torgeir R. Hvidsten, Anna M. Kedzierska, Jelle Van Leene, Geert De Jaeger, Gerrit T. S. Beemster, Henryk Jan Komorowski, Martin T. R. Kuiper:
Gene expression trends and protein features effectively complement each other in gene function prediction. Bioinform. 25(3): 322-330 (2009) - 2008
- [j20]Michal Draminski, Alvaro Rada-Iglesias, Stefan Enroth, Claes Wadelius, Jacek Koronacki, Henryk Jan Komorowski:
Monte Carlo feature selection for supervised classification. Bioinform. 24(1): 110-117 (2008) - [j19]Robin Andersson, Carl E. G. Bruder, Arkadiusz Piotrowski, Uwe Menzel, Helena Nord, Johanna Sandgren, Torgeir R. Hvidsten, Teresita Diaz de Ståhl, Jan P. Dumanski, Henryk Jan Komorowski:
A segmental maximum a posteriori approach to genome-wide copy number profiling. Bioinform. 24(6): 751-758 (2008) - [j18]Jakub Orzechowski Westholm, Feifei Xu, Hans Ronne, Henryk Jan Komorowski:
Genome-scale study of the importance of binding site context for transcription factor binding and gene regulation. BMC Bioinform. 9 (2008) - [j17]Aleksejs Kontijevskis, Jan Komorowski, Jarl E. S. Wikberg:
Generalized Proteochemometric Model of Multiple Cytochrome P450 Enzymes and Their Inhibitors. J. Chem. Inf. Model. 48(9): 1840-1850 (2008) - 2007
- [j16]Claes R. Andersson, Torgeir R. Hvidsten, Anders Isaksson, Mats G. Gustafsson, Jan Komorowski:
Revealing cell cycle control by combining model-based detection of periodic expression with novel cis-regulatory descriptors. BMC Syst. Biol. 1: 45 (2007) - [j15]Aleksejs Kontijevskis, Peteris Prusis, Ramona Petrovska, Sviatlana Yahorava, Felikss Mutulis, Ilze Mutule, Henryk Jan Komorowski, Jarl E. S. Wikberg:
A Look Inside HIV Resistance through Retroviral Protease Interaction Maps. PLoS Comput. Biol. 3(3) (2007) - [j14]Torgeir R. Hvidsten, Henryk Jan Komorowski:
Rough Sets in Bioinformatics. Trans. Rough Sets 7: 225-243 (2007) - 2006
- [j13]Adam Ameur, Vladimir Yankovski, Stefan Enroth, Ola Spjuth, Henryk Jan Komorowski:
The LCB Data Warehouse. Bioinform. 22(8): 1024-1026 (2006) - [j12]Bartek Wilczynski, Torgeir R. Hvidsten, Andriy Kryshtafovych, Jerzy Tiuryn, Henryk Jan Komorowski, Krzysztof Fidelis:
Using local gene expression similarities to discover regulatory binding site modules. BMC Bioinform. 7: 505 (2006) - [c36]Witold R. Rudnicki, Marcin Kierczak, Jacek Koronacki, Henryk Jan Komorowski:
A Statistical Method for Determining Importance of Variables in an Information System. RSCTC 2006: 557-566 - 2005
- [c35]Michal Draminski, Jacek Koronacki, Henryk Jan Komorowski:
A study on Monte Carlo Gene Screening. Intelligent Information Systems 2005: 349-356 - [c34]Hung Son Nguyen, Marta Luksza, Ewa Makosa, Henryk Jan Komorowski:
An Approach to Mining Data with Continuous Decision Values. Intelligent Information Systems 2005: 653-662 - [c33]Witold R. Rudnicki, Henryk Jan Komorowski:
Soft Computing Approach to the Analysis of the Amino Acid Similarity Matrices. Intelligent Information Systems 2005: 663-670 - [c32]Robin Andersson, Aida Vitória, Jan Maluszynski, Henryk Jan Komorowski:
RoSy: A Rough Knowledge Base System. RSFDGrC (2) 2005: 48-58 - 2004
- [j11]Torgeir R. Hvidsten, Andriy Kryshtafovych, Henryk Jan Komorowski, Krzysztof Fidelis:
A novel approach to fold recognition using sequence-derived properties from sets of structurally similar local fragments of proteins. Bioinform. 20(2): 293 (2004) - [c31]Helena Strömbergsson, Peteris Prusis, Herman Midelfart, Jarl E. S. Wikberg, Henryk Jan Komorowski:
Proteochemometrics Modeling of Receptor-Ligand Interactions Using Rough Sets. German Conference on Bioinformatics 2004: 85-94 - [c30]Witold R. Rudnicki, Henryk Jan Komorowski:
Feature Synthesis and Extraction for the Construction of Generalized Properties of Amino Acids. Rough Sets and Current Trends in Computing 2004: 786-791 - [e5]Shusaku Tsumoto, Roman Slowinski, Henryk Jan Komorowski, Jerzy W. Grzymala-Busse:
Rough Sets and Current Trends in Computing, 4th International Conference, RSCTC 2004, Uppsala, Sweden, June 1-5, 2004, Proceedings. Lecture Notes in Computer Science 3066, Springer 2004, ISBN 3-540-22117-4 [contents] - 2003
- [j10]Torgeir R. Hvidsten, Astrid Lægreid, Henryk Jan Komorowski:
Learning Rule-based Models of Biological Process from Gene Expression Time Profiles Using Gene Ontology. Bioinform. 19(9): 1116-1123 (2003) - [c29]Bartosz Wilczynski, Torgeir R. Hvidsten, Andriy Kryshtafovych, Lisa Stubbs, Henryk Jan Komorowski, Krzysztof Fidelis:
A rule-based framework for gene regulation pathways discovery. CSB 2003: 435-436 - [c28]Andriy Kryshtafovych, Torgeir R. Hvidsten, Henryk Jan Komorowski, Krzysztof Fidelis:
Fold Recognition Using Sequence Fingerprints of Protein Local Substructures. CSB 2003: 517-518 - [c27]Torgeir R. Hvidsten, Andriy Kryshtafovych, Henryk Jan Komorowski, Krzysztof Fidelis:
A novel approach to fold recognition using sequence-derived properties from sets of structurally similar local fragments of proteins. ECCB 2003: 81-91 - 2002
- [j9]Herman Midelfart, Henryk Jan Komorowski, Kristin Nørsett, Fekadu Yadetie, Arne K. Sandvik, Astrid Lægreid:
Learning Rough Set Classifiers from Gene Expressions and Clinical Data. Fundam. Informaticae 53(2): 155-183 (2002) - [c26]Henryk Jan Komorowski:
Modelling Biological Phenomena with Rough Sets. Rough Sets and Current Trends in Computing 2002: 13 - [c25]Herman Midelfart, Henryk Jan Komorowski:
A Rough Set Framework for Learning in a Directed Acyclic Graph. Rough Sets and Current Trends in Computing 2002: 144-155 - 2001
- [c24]Herman Midelfart, Astrid Lægreid, Henryk Jan Komorowski:
Classification of Gene Expression Data in an Ontology. ISMDA 2001: 186-194 - [c23]Torgeir R. Hvidsten, Henryk Jan Komorowski, Arne K. Sandvik, Astrid Lægreid:
Predicting Gene Function from Gene Expressions and Ontologies. Pacific Symposium on Biocomputing 2001: 299-310 - [c22]Tor-Kristian Jenssen, Lisa M. J. Öberg, Magnus L. Andersson, Jan Komorowski:
Methods for Large-Scale Mining of Networks of Human Genes. SDM 2001: 1-16 - 2000
- [c21]Henryk Jan Komorowski, Torgeir R. Hvidsten, Tor-Kristian Jenssen, Dyre Tjeldvoll, Eivind Hovig, Arne K. Sandvik, Astrid Lægreid:
Towards Knowledge Discovery from cDNA Microarray Gene Expression Data. PKDD 2000: 470-475 - [c20]Herman Midelfart, Henryk Jan Komorowski:
A Rough Set Approach to Inductive Logic Programming. Rough Sets and Current Trends in Computing 2000: 190-198 - [e4]Djamel A. Zighed, Henryk Jan Komorowski, Jan M. Zytkow:
Principles of Data Mining and Knowledge Discovery, 4th European Conference, PKDD 2000, Lyon, France, September 13-16, 2000, Proceedings. Lecture Notes in Computer Science 1910, Springer 2000, ISBN 3-540-41066-X [contents]
1990 – 1999
- 1999
- [j8]Henryk Jan Komorowski, Aleksander Øhrn:
Modelling prognostic power of cardiac tests using rough sets. Artif. Intell. Medicine 15(2): 167-191 (1999) - [c19]Thomas Ågotnes, Henryk Jan Komorowski, Terje Løken:
Taming Large Rule Models in Rough Set Approaches. PKDD 1999: 193-203 - [c18]Aleksander Øhrn, Henryk Jan Komorowski:
Diagnosing Acute Appendicitis with Very Simple Classification Rules. PKDD 1999: 462-467 - 1998
- [c17]Tor-Kristian Jenssen, Henryk Jan Komorowski, Aleksander Øhrn:
Some Heuristics for Default Knowledge Discovery. Rough Sets and Current Trends in Computing 1998: 373-380 - 1997
- [j7]Mihhail Matskin, Henryk Jan Komorowski:
Partial Structural Synthesis of Programs. Fundam. Informaticae 31(2): 125-144 (1997) - [j6]Henryk Jan Komorowski, Lech Polkowski, Andrzej Skowron:
Towards a Rough Mereology-Based Logic for Approximate Solution Synthesis. Part 1. Stud Logica 58(1): 143-184 (1997) - [c16]Aleksander Øhrn, Staal Amund Vinterbo, Piotr Szymanski, Jan Komorowski:
Modelling cardiac patient set residuals using rough sets. AMIA 1997 - [c15]Henryk Jan Komorowski, Lech Polkowski, Andrzej Skowron:
Rough Sets for Data Mining and Knowledge Discovery (Abstract). PKDD 1997: 393 - [e3]Henryk Jan Komorowski, Jan M. Zytkow:
Principles of Data Mining and Knowledge Discovery, First European Symposium, PKDD '97, Trondheim, Norway, June 24-27, 1997, Proceedings. Lecture Notes in Computer Science 1263, Springer 1997, ISBN 3-540-63223-9 [contents] - 1996
- [c14]Mihhail Matskin, Henryk Jan Komorowski, John Krogstie:
Partial Deduction in the Framework of Structural Synthesis of Programs. LOPSTR 1996: 239-255 - 1995
- [c13]Pierre Deransart, Henryk Jan Komorowski:
Task Force on Logic Program Development (Compulog Project). LPE 1995 - [c12]Roger Klausen, Henryk Jan Komorowski:
Omega-Perfect Semantics for Inductive Synthesis, Refinement Calculus and Update of Logic Programs. WOCFAI 1995: 181-192 - [e2]Agnar Aamodt, Jan Komorowski:
Fifth Scandinavian Conference on Artificial Intelligence, SCAI 1995, Trondheim, Norway, 29-31 May, 1995. Frontiers in Artificial Intelligence and Applications 28, IOS Press 1995, ISBN 90-5199-221-1 [contents] - 1994
- [j5]Henryk Jan Komorowski, Zbigniew W. Ras:
Guest Editors' Preface - Selected Papers from the ISMIS'93 Symposium. Fundam. Informaticae 21(3): 161-162 (1994) - [c11]Henryk Jan Komorowski, Silvia Trcek:
Towards Refinement of Definite Logic Programs. ISMIS 1994: 315-325 - 1993
- [j4]Henryk Jan Komorowski:
A Prolegomenon to Partial Deduction. Fundam. Informaticae 18: 41-64 (1993) - [j3]Henryk Jan Komorowski:
Guest Editor's Introduction. J. Log. Program. 16(1): 1-3 (1993) - [e1]Henryk Jan Komorowski, Zbigniew W. Ras:
Methodologies for Intelligent Systems, 7th International Symposium, ISMIS '93, Trondheim, Norway, June 15-18, 1993, Proceedings. Lecture Notes in Computer Science 689, Springer 1993, ISBN 3-540-56804-2 [contents] - 1992
- [c10]Henryk Jan Komorowski:
An Introduction to Partial Deduction. META 1992: 49-69 - 1991
- [c9]Henryk Jan Komorowski:
On Data-type-centered, Correctness-oriented Design. ICLP Workshop on Construction of Logic Programs 1991: 97-112 - 1990
- [c8]Henryk Jan Komorowski:
Towards a Programming Methodology Founded on Partial Deduction. ECAI 1990: 404-409
1980 – 1989
- 1988
- [j2]Henryk Jan Komorowski:
A declarative logic programming environment. J. Syst. Softw. 8(2): 77-89 (1988) - [c7]Henryk Jan Komorowski, Charles Barr, Edward Pattison-Gordon:
Browsing and Authoring Tools for a Unified Medical Language System. RIAO 1988: 624-634 - 1987
- [j1]Henryk Jan Komorowski, Jan Maluszynski:
Logic Programming and Rapid Prototyping. Sci. Comput. Program. 9(2): 179-205 (1987) - [c6]Henryk Jan Komorowski:
On the Mechniszation of Programmer's Knowledge. ISMIS 1987: 45-55 - 1985
- [c5]Jan Maluszynski, Henryk Jan Komorowski:
Unification-Free Execution of Logic Programs. SLP 1985: 78-86 - [c4]Henryk Jan Komorowski, Shigeo Omori:
A model and an implementation of a logic programming environment. SLIPE 1985: 191-198 - 1984
- [c3]Henryk Jan Komorowski:
Rapid Software Development in a Database Framework - A Case Study. ICDE 1984: 394-398 - 1982
- [c2]Henryk Jan Komorowski:
An Abstract PROLOG Machine. ECICS 1982: 183-191 - [c1]Henryk Jan Komorowski:
Partial Evaluation as a Means for Inferencing Data Structures in an Applicative Language: A Theory and Implementation in the Case of Prolog. POPL 1982: 255-267
Coauthor Index
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