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Authors: Cinzia Di Giusto 1 ; Cédric Gaucherel 2 ; Hanna Klaudel 3 and Franck Pommereau 3

Affiliations: 1 Université Côte d’Azur, CNRS, I3S, France ; 2 AMAP - INRA, CIRAD, CNRS, IRD, Université Montpellier, France ; 3 IBISC, Univ Evry, Université Paris-Saclay, Evry, France

Keyword(s): Rewriting Systems, Similarity Rate, Pattern Matching, Ecosystems.

Abstract: In this paper we consider discrete qualitative models of ecosystems viewed as collections of interacting living (animals, plants. . . ) and nonliving entities (air, water, soil. . . ), whose conditions of appearance/disappearance are controlled by a set of formal rules (i.e., processes). We present here a rule-based method allowing to compare ecosystems. The method relies on a measure of similarity and on an optimization algorithm. In addition, the proposed method allows to detect patterns (i.e., ecological processes or sets of processes) in ecosystems. We have validated the method by applying it against a set of models and patterns provided by ecologists.

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Paper citation in several formats:
Di Giusto, C.; Gaucherel, C.; Klaudel, H. and Pommereau, F. (2019). Pattern Matching in Discrete Models for Ecosystem Ecology. In Proceedings of the 12th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2019) - BIOINFORMATICS; ISBN 978-989-758-353-7; ISSN 2184-4305, SciTePress, pages 101-111. DOI: 10.5220/0007485801010111

@conference{bioinformatics19,
author={Cinzia {Di Giusto}. and Cédric Gaucherel. and Hanna Klaudel. and Franck Pommereau.},
title={Pattern Matching in Discrete Models for Ecosystem Ecology},
booktitle={Proceedings of the 12th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2019) - BIOINFORMATICS},
year={2019},
pages={101-111},
publisher={SciTePress},
organization={INSTICC},
doi={10.5220/0007485801010111},
isbn={978-989-758-353-7},
issn={2184-4305},
}

TY - CONF

JO - Proceedings of the 12th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2019) - BIOINFORMATICS
TI - Pattern Matching in Discrete Models for Ecosystem Ecology
SN - 978-989-758-353-7
IS - 2184-4305
AU - Di Giusto, C.
AU - Gaucherel, C.
AU - Klaudel, H.
AU - Pommereau, F.
PY - 2019
SP - 101
EP - 111
DO - 10.5220/0007485801010111
PB - SciTePress

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