There is a newer version of the record available.

Published August 5, 2019 | Version 2.5.0
Software Open

nipy/nibabel: 2.5.0

Creators

  • 1. School of Psychology, University of Birmingham, Birmingham, UK
  • 2. Stanford University
  • 3. Otto-von-Guericke-University Magdeburg, Germany
  • 4. Microsoft Research, Montréal, Québec, Canada
  • 5. UC San Diego
  • 6. Center for Open Neuroscience, Dartmouth College
  • 7. Dartmouth College: Hanover, NH, United States
  • 8. Wellcome Centre for Integrative Neuroimaging, University of Oxford, UK
  • 9. MIT, HMS
  • 10. University of Washington: Seattle, WA, United States
  • 11. Athena EPI, Inria Sophia-Antipolis
  • 12. Institute of Neuroinformatics, ETH/University of Zurich
  • 13. Deptartment of Radiology, University of Cincinnati College of Medicine, Cincinnati, OH
  • 14. Harvard University - Psychology
  • 15. The University of Washington eScience Institute
  • 16. Berkeley Institute for Data Science, UC Berkeley
  • 17. CNRS LTCI, Telecom ParisTech, Université Paris-Saclay
  • 18. Montreal Neurological Institute and Hospital
  • 19. Rotman Research Institute, Baycrest Health Sciences, Toronto, ON, Canada
  • 20. SRI International
  • 21. MIT
  • 22. BrainSpec, Boston, MA
  • 23. INRIA
  • 24. Université de Sherbrooke
  • 25. McGill University
  • 26. University College London, London, UK
  • 27. University of California, San Francisco
  • 28. Department of Neuropsychiatry, University of Pennsylvania
  • 29. CEA
  • 30. University College London
  • 31. Athinoula A. Martinos Center for Biomedical Imaging, Charlestown, MA
  • 32. TIB – Leibniz Information Centre for Science and Technology and University Library, Hannover, Germany
  • 33. National Technical University of Athens, Greece
  • 34. Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, Germany
  • 35. National Institute of Mental Health and Neuro-Sciences, India

Description

New feature release in the 2.5.x series.

Most work on NiBabel so far has been by Matthew Brett (MB), Chris Markiewicz (CM), Michael Hanke (MH), Marc-Alexandre Côté (MC), Ben Cipollini (BC), Paul McCarthy (PM), Chris Cheng (CC), Yaroslav Halchenko (YOH), Satra Ghosh (SG), Eric Larson (EL), Demian Wassermann, and Stephan Gerhard.

References like "pr/298" refer to github pull request numbers.

2.5.0 (Sunday 4 August 2019)

The 2.5.x series is the last with support for either Python 2 or Python 3.4. Extended support for this series 2.5 will last through December 2020.

Thanks for the test ECAT file and fix provided by Andrew Crabb.

Enhancements
  • Add SerializableImage class with to/from_bytes methods (#644) (CM, reviewed by MB)
  • Check CIFTI-2 data shape matches shape described by header (#774) (Michiel Cottaar, reviewed by CM)
Bug fixes
  • Handle stricter numpy casting rules in tests (#768) (CM, reviewed by PM)
  • TRK header fields flipped in files written on big-endian systems (#782) (CM, reviewed by YOH, MB)
  • Load multiframe ECAT images with Python 3 (CM and Andrew Crabb)
Maintenance
  • Fix CodeCov paths on Appveyor for more accurate coverage (#769) (CM)
  • Move to setuptools and reduce use nisext functions (#764) (CM, reviewed by YOH)
  • Better handle test setup/teardown (#785) (CM, reviewed by YOH)
API changes and deprecations
  • Effect threatened warnings and set some deprecation timelines (#755) (CM)
    • Trackvis methods now default to v2 formats
    • nibabel.trackvis scheduled for removal in nibabel 4.0
    • nibabel.minc and nibabel.MincImage will be removed in nibabel 3.0

Files

nipy/nibabel-2.5.0.zip

Files (4.5 MB)

Name Size Download all
md5:895982e0b66bf65c5b93b4b919c75d5f
4.5 MB Preview Download

Additional details

Related works

Is supplement to
https://github.com/nipy/nibabel/tree/2.5.0 (URL)