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Published July 12, 2019 | Version 0.9.2
Software Open

PyBIDS: Python tools for BIDS datasets

Creators

  • 1. University of Texas at Austin
  • 2. Stanford University
  • 3. Department of Psychology, Stanford University
  • 4. Dartmouth College
  • 5. Florida International University
  • 6. University of Oregon
  • 7. McGill University
  • 8. Institute for Problems of Information Transmission
  • 9. Concordia University
  • 10. National Institute of Mental Health
  • 11. MRC Cognition and Brain Sciences Unit
  • 12. Montreal Neurological Institute and Hospital
  • 13. Alan Turing Institute; Department of Psychiatry, University of Cambridge
  • 14. Psychoinformatics Lab, Institute of Psychology, Otto-von-Guericke University Magdeburg
  • 15. Center for Adaptive Rationality, Max Planck Institute for Human Development, Berlin, Germany
  • 16. KTH Royal Institute of Technology
  • 17. CorticoMetrics LLC
  • 18. Télécom ParisTech, France
  • 19. Otto-von-Guericke-University Magdeburg, Germany
  • 20. Berkeley Institute for Data Science; University of California at Berkeley
  • 21. Queen Mary University London
  • 22. The University of Washington eScience Institute
  • 23. INRIA
  • 24. Ottawa Hospital Research Institute
  • 25. Rutgers University
  • 26. Centre for Addiction and Mental Health, University of Toronto, Canada
  • 27. NIMH IRP
  • 28. UC Berkeley
  • 29. The Laboratory for Investigative Neurophysiology (The LINE), Department of Radiology and Department of Clinical Neurosciences, Lausanne, Switzerland; Center for Biomedical Imaging (CIBM), Lausanne, Switzerland
  • 30. Sainte-Anne Hospital Center, Université Paris Descartes

Description

Release Notes

This version includes a number of minor fixes and improvements. EEG files are better handled, and BIDSLayout and BIDSFile play more nicely with Path-like objects.

With thanks to new contributor Cecile Madjar.

Changes

  • FIX: Instantiate ignore/force_index after root validation (#457)
  • FIX: Restore <entity>=None query returning files lacking the entity (#458)
  • ENH: Add BIDSJSONFile (#444)
  • ENH: Add BIDSFile.__fspath__ to work with pathlib (#449)
  • ENH: Add eeg datatype to layout config (#455)
  • RF: Remove unused kwargs to BIDSFile (#443)
  • DOC: Improve docstring consistency, style (#443)
  • DOC: Address final JOSS review (#453)
  • STY: PEP8 Fixes (#456)
  • MAINT: Set name explicitly in setup.py (#450)

Files

bids-standard/pybids-0.9.2.zip

Files (6.1 MB)

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Additional details

Related works

Is supplement to
https://github.com/bids-standard/pybids/tree/0.9.2 (URL)