Plasmodium RUF2 RNA: Difference between revisions
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{{Infobox rfam |
{{Infobox rfam |
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| Name = ''Plasmodium'' RNA of unknown function |
| Name = ''Plasmodium'' RNA of unknown function 2 |
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| image = RUF2 SS.png |
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| caption = |
| caption = Predicted [[secondary structure]] of RUF2 |
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| Symbol = RUF2 |
| Symbol = RUF2 |
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'''RUF2''' is a [[non-coding RNA]](ncRNA) present within the [[plasmodium]] [[genome]]. [[bioinformatics|Bioinformatic]] studies predicted that RUF2 was present within the plasmodium genome and the expression of this ncRNA was verified by [[Northern Blot]]. |
'''RUF2''' is a [[non-coding RNA]] (ncRNA) present within the [[plasmodium]] [[genome]]. [[bioinformatics|Bioinformatic]] studies predicted that RUF2 was present within the plasmodium genome and the expression of this ncRNA was verified by [[Northern Blot]].<ref name="pmid17901154">{{cite journal | vauthors = Chakrabarti K, Pearson M, Grate L, Sterne-Weiler T, Deans J, Donohue JP, Ares M | title = Structural RNAs of known and unknown function identified in malaria parasites by comparative genomics and RNA analysis | journal = RNA | volume = 13 | issue = 11 | pages = 1923–1939 | date = November 2007 | pmid = 17901154 | pmc = 2040097 | doi = 10.1261/rna.751807 | url = http://www.rnajournal.org/cgi/pmidlookup?view=long&pmid=17901154 | format = Free full text }}</ref> The location of this ncRNAs was subsequently mapped within the ''[[P. falciparum]]'' strain 3DF genome by [[primer extension]]. RUF2 is a novel RNA of unknown function but has shown to contain some structural similarity with the H/ACA box [[snoRNA]] but no known targets have been identified. |
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==References== |
== References == |
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{{reflist}} |
{{reflist}} |
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== External links == |
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* {{Rfam|id=RF01579|name=Plasmodium RNA of unknown function RUF2}} |
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[[Category:Non-coding RNA]] |
[[Category:Non-coding RNA]] |
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Latest revision as of 23:09, 29 February 2024
| Plasmodium RNA of unknown function 2 | |
|---|---|
 Predicted secondary structure of RUF2 | |
| Identifiers | |
| Symbol | RUF2 |
| Rfam | RF01579 |
| Other data | |
| RNA type | sRNA |
| Domain(s) | Plasmodium |
| PDB structures | PDBe |
RUF2 is a non-coding RNA (ncRNA) present within the plasmodium genome. Bioinformatic studies predicted that RUF2 was present within the plasmodium genome and the expression of this ncRNA was verified by Northern Blot.[1] The location of this ncRNAs was subsequently mapped within the P. falciparum strain 3DF genome by primer extension. RUF2 is a novel RNA of unknown function but has shown to contain some structural similarity with the H/ACA box snoRNA but no known targets have been identified.
References
[edit]- ^ Chakrabarti K, Pearson M, Grate L, Sterne-Weiler T, Deans J, Donohue JP, Ares M (November 2007). "Structural RNAs of known and unknown function identified in malaria parasites by comparative genomics and RNA analysis" (Free full text). RNA. 13 (11): 1923–1939. doi:10.1261/rna.751807. PMC 2040097. PMID 17901154.