It is well known that microbial-mediated soil respiration, the major source of CO2 from terrestrial ecosystems, is sensitive to temperature. Here, we hypothesize that some mechanisms, such as acclimation of microbial respiration to temperature and/or regulation by plant fresh C inputs of the temperature sensitivity of decomposition of soil organic matter (SOM), should be taken into account to predict soil respiration correctly. Specifically, two hypotheses were tested: (1) under warm conditions, temperature sensitivity (Q10) and basal rates of microbial-mediated soil respiration (Bs20, respiration at a given temperature) would be primarily subjected to presence/absence of plant fresh C inputs; and (2) under cold conditions, where labile C depletion occurred more slowly, microbial-mediated soil respiration could adjust its optimal temperatures to colder temperatures (acclimation), resulting in a net increase of respiration rates for a given temperature (Bs20). For this purpose, intact soil cores from an oak savanna ecosystem were incubated with sufficient water supply at two contrasting temperatures (10 and 30°C) during 140 days. To study temperature sensitivity of soil respiration, short-term temperature cycles (from 5 to 40°C at 8 h steps) were applied periodically to the soils. Our results confirmed both hypotheses. Under warm conditions ANCOVA and likelihood ratio tests confirmed that both Q10 and Bs20 decreased significantly during the incubation. Further addition of glucose at the end of the incubation period increased Bs20 and Q10 to initial values. The observed decrease in temperature sensitivity (Q10) in absence of labile C disagrees with the broadly accepted fact that temperature sensitivity of the process increases as quality of the substrate decreases. Our experiment also shows that after 2 months of incubation cold-incubated soils doubled the rates of respiration at cold temperatures causing a strong increase in basal respiration rates (Bs20). This suggest that microbial community may have up-regulated their metabolism at cold conditions (cold-acclimation), which also disagrees with most observations to date. The manuscript discusses those two apparent contradictions: the decrease in temperature sensitivity in absence of labile C and the increase in microbial-mediated soil respiration rates at cold temperatures. While this is only a case study, the trends observed could open the controversy over the validity of current soil respiration models.

© 2014 Radenbaugh et al.The detection of somatic single nucleotide variants is a crucial component to the characterization of the cancer genome. Mutation calling algorithms thus far have focused on comparing the normal and tumor genomes from the same indiv

Tailoring the spin orientation at the atomic scale has been a key task in spintronics technology. While controlling the out-of-plane to in-plane spin orientation has been achieved by a precise control of the perpendicular magnetic anisotropy at atomic layer thickness level, a design and control of the in-plane magnetic anisotropy has not yet been well developed. On well aligned atomic steps of a 6° vicinal Cu(001) surface with steps parallel to the [110] axis, we grow Py/Ni overlayer films epitaxially to permit a systematic exploration of the step-induced in-plane magnetic anisotropy as a function of both the Py and the Ni film thicknesses. We found that the atomic steps from the vicinal Cu(001) induce an in-plane uniaxial magnetic anisotropy that favors both Py and Ni magnetizations perpendicular to the steps, opposite to the behavior of Co on vicinal Cu(001). In addition, thickness-dependent study shows that the Ni films exhibit different magnetic anisotropy below and above ~6 ML Ni thickness.

Tailoring the spin orientation at the atomic scale has been a key task in spintronics technology. While controlling the out-of-plane to in-plane spin orientation has been achieved by a precise control of the perpendicular magnetic anisotropy at atomic layer thickness level, a design and control of the in-plane magnetic anisotropy has not yet been well developed. On well aligned atomic steps of a 6° vicinal Cu(001) surface with steps parallel to the [110] axis, we grow Py/Ni overlayer films epitaxially to permit a systematic exploration of the step-induced in-plane magnetic anisotropy as a function of both the Py and the Ni film thicknesses. We found that the atomic steps from the vicinal Cu(001) induce an in-plane uniaxial magnetic anisotropy that favors both Py and Ni magnetizations perpendicular to the steps, opposite to the behavior of Co on vicinal Cu(001). In addition, thickness-dependent study shows that the Ni films exhibit different magnetic anisotropy below and above ~6 ML Ni thickness.

Fe/NiO/Fe/CoO/Ag(001) single crystalline films were grown epitaxially and investigated by x-ray magnetic circular dichroism and x-ray magnetic linear dichroism. The bottom Fe layer magnetization is pinned through exchange coupling to the CoO layer and the top Fe layer magnetization can be rotated by an in-plane external magnetic field. We find that the NiO spins wind up to form a domain wall due to the perpendicular NiO/Fe interfacial coupling as the top layer Fe magnetization rotates from 0° to 90°, but switch wall chirality and unwind the wall as the Fe magnetization rotates from 90° to 180°. This observation shows that Mauri's 180° domain wall does not exist in perpendicularly coupled ferromagnetic-antiferromagnetic systems in the strong coupling regime.

Magnetic vortex and antivortex are the two basic topological states in magnetic systems. While the ferromagnetic (FM) vortex state can be formed spontaneously and be imprinted into an antiferromagnetic (AFM) layer in AFM/FM disks, the antivortex state has never been realized in AFM films. By fabricating single crystalline NiO/Fe/Ag(001) microstructures, we show that the magnetic antivortex state can be created in the Fe microstructures and imprinted into the AFM NiO layer. © 2014 AIP Publishing LLC.

Despite theoretical predictions, it remains an experimental challenge to realize an artificial magnetic skyrmion whose topology can be well controlled and tailored so that its topological effect can be revealed explicitly in a deformation of the spin textures. Here we report epitaxial magnetic thin films in which an artificial skyrmion is created by embedding a magnetic vortex into an out-of-plane aligned spin environment. By changing the relative orientation between the central vortex core polarity and the surrounding out-of-plane spins, we are able to control and tailor the system between two skyrmion topological states. An in-plane magnetic field is used to annihilate the skyrmion core by converting the central vortex state into a single domain state. Our result shows distinct annihilation behaviour of the skyrmion core for the two different skyrmion states, suggesting a topological effect of the magnetic skyrmions in the core annihilation process.

Discrimination of self from non-self is fundamental to a wide range of immunological processes¹. During pregnancy, the mother does not recognize the placenta as immunologically foreign because antigens expressed by trophoblasts, the placental cells that interface with the maternal immune system, do not activate maternal T cells². Currently, these activation defects are thought to reflect suppression by regulatory T cells³. By contrast, mechanisms of B cell tolerance to trophoblast antigens have not been identified. Here we provide evidence that glycan-mediated B cell suppression has a key role in establishing fetomaternal tolerance in mice. B cells specific for a model trophoblast antigen are strongly suppressed through CD22-LYN inhibitory signalling, which in turn implicates the sialylated glycans of the antigen as key suppressive determinants. Moreover, B cells mediate the MHC-class-II-restricted presentation of antigens to CD4⁺ T cells, which leads to T cell suppression, and trophoblast-derived sialoglycoproteins are released into the maternal circulation during pregnancy in mice and humans. How protein glycosylation promotes non-immunogenic placental self-recognition may have relevance to immune-mediated pregnancy complications and to tumour immune evasion. We also anticipate that our findings will bolster efforts to harness glycan biology to control antigen-specific immune responses in autoimmune disease.

While a magnetic antivortex state can be created in ring structures, much effort has been devoted to stabilizing a magnetic antivortex as the ground state in a single island. Among many proposals, less attention has been paid to the role of magnetocrystalline anisotropy because most magnetic microstructures are made of polycrystalline materials. By patterning epitaxial Fe/Ag(001) films along different in-plane directions, we show that the Fe magnetocrystalline anisotropy plays a very important role in stabilizing different types of vortex/antivortex states. In particular, we find that an Fe island in the shape of an elongated hexagon favors vortex array formation when the long edge is parallel to the Fe easy magnetization axis, and favors the vortex-antivortex array formation when the long edge is parallel to the Fe hard magnetization axis. © 2014 AIP Publishing LLC.

© 2015 Nawandar et al.Epstein-Barr virus (EBV) is a human herpesvirus associated with B-cell and epithelial cell malignancies. EBV lytically infects normal differentiated oral epithelial cells, where it causes a tongue lesion known as oral hairy leukoplaki