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@rust-bio @iqbal-lab-org @Snakemake-Profiles @snakemake @Mykrobe-tools

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  1. rasusa rasusa Public

    Randomly subsample sequencing reads or alignments

    Rust 211 17

  2. snakemake/snakefmt snakemake/snakefmt Public

    The uncompromising Snakemake code formatter

    Python 153 29

  3. ssubmit ssubmit Public

    Submit slurm sbatch jobs without a script

    Rust 65 5

  4. nohuman nohuman Public

    Remove human reads from a sequencing run

    Rust 23 3

  5. ontime ontime Public

    Extract subsets of ONT (Nanopore) reads based on time

    Rust 20 1

  6. psdm psdm Public

    Compute a pairwise SNP distance matrix from one or two alignment(s)

    Rust 21 1