Nanopore sequencing enables reading strings of A,C,G,T nucleotides in DNA strands by pulling them into nanopores with the help of motor proteins.
Nanopore sequencing enables reading strings of A,C,G,T nucleotides in DNA strands by pulling them into nanopores with the help of motor proteins.
This paper model the nanopore channel as a noisy duplication channel that stretches every sample of a codeword using a geometric distribution, and then adds ...
The ML decoder compares a noisy squiggle against each reference signal of a codebook, making use of the piecewise-constant assumption.
Nanopores. Conference Paper. Error Bounds for Decoding Piecewise Constant Nanopore Signals in DNA Storage. May 2023. DOI:10.1109/ICC45041.2023.10279497.
People also ask
What is the error rate of Nanopore DNA sequencing?
To facilitate decoding, we include a circumfix in the base code to reduce the effect of the nanopore channel memory. We show that the decoding complexity scales ...
Vidal, V.B. Wijekoon, E. Viterbo, "Error bounds for decoding piecewise constant nanopore signals in DNA storage," International Conference on Communications ( ...
This paper proposes a mathematical model for the "channel" from the input DNA sequence to the observed current, and calculates bounds on the information ...
Error bounds for decoding piecewise constant nanopore signals in DNA storage. A Vidal, VB Wijekoon, E Viterbo. ICC 2023-IEEE International Conference on ...
Mar 18, 2024 · [21] A. Vidal, V. B. Wijekoon, and E. Viterbo, “Error Bounds for Decoding Piecewise Constant Nanopore Signals in DNA Storage,” in Proc IEEE Int.