Prediction and alignment of RNA pseudoknot structures are NP-hard. Nevertheless, several efficient prediction algorithms by dynamic programming have been ...
We present a general scheme that yields an efficient alignment algorithm for arbitrary such classes. Moreover, we show that such an alignment algorithm benefits ...
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Lifting Prediction to Alignment of RNA Pseudoknots. Mathias Möhl ... Prediction and alignment of RNA pseudoknot structures are NP-hard. Nev- ertheless ...
A general scheme that yields an efficient alignment algorithm for arbitrary such classes of pseudoknots is presented and it is shown that such an alignment ...
7 days ago · Prediction and alignment of RNA pseudoknot structures are NP-hard. Nevertheless, several efficient prediction algorithms by dynamic ...
Lifting Prediction to Alignment of RNA Pseudoknots. Mathias Möhl∗, Sebastian ... Let A be the optimal alignment of Fa and Fb and let Tb be the basetype obtained.
The method is also used for finding direct or inverted repeats in protein and DNA sequences, and for predicting regions in RNA that are self-complementary and ...
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Knotty can predict structures including pseudoknots with an accuracy comparable to that of SPOT-RNA, but as shown in Figure 3, it can perform secondary ...
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Feb 6, 2015 · In this article we present a novel method for aligning two known RNA secondary structures with pseudoknots. We adopt the partition function ...
In this thesis we systematically analyzed the problems of RNA pseudoknot structure prediction and alignment. ... Lifting prediction to align- ment of RNA ...