A multiple alignment can be represented by a POG, in which nodes are the residues (aligned residues are merged) and the sequential order of the residues defines ...
Results: A new method of multiple protein structure alignment, POSA (Partial Order Structure Alignment), was developed using a partial order graph ...
The advantages of using partial ordered graphs is to preserve information on nonaligned residues. The pairwise alignments are performed with FATCAT, which ...
Oct 22, 2024 · The order of structures to be aligned is given by a guide tree (( A , B ),( C , D )). At each step, POSA performs alignment of two POGs (see ...
Results: A new method of multiple protein structure alignment, POSA ( P artial O rder S tructure A lignment), was developed using a partial order graph ...
Combining partial order alignment and progressive multiple sequence alignment increases alignment speed and scalability to very large alignment problems.
Oct 22, 2024 · POA graphs are directed acyclic graphs that represent multiple sequence alignments, capturing the relationships between sequences and ...
Missing: flexible | Show results with:flexible
POSA adopts a partial order graph representation of multiple alignments so that it can capture partially conserved regions. I will also briefly introduce a ...
POSA (Partial Order Structure Alignment), available at http://posa.godziklab.org, is a server for multiple protein structure alignment introduced in 2005.
Multiple flexible structure alignment using partial order graphs. https://doi.org/10.1093/bioinformatics/bti353 · Full text. Journal: Bioinformatics, 2005 ...