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We have recently described a new conformational search strategy for protein folding algorithms called the CGU (convex global underestimator) method.
Here we use a simplified protein chain representation and a differentiable form of the Sun/Thomas/Dill energy function to test the CGU method. Standard search ...
Oct 22, 2024 · Here we use a simplified protein chain representation and a differentiable form of the Sun/Thomas/Dill energy function to test the CGU method.
Protein Structure and Energy Landscape Dependence on Sequence Using a Continuous Energy Function. K.A. DILL,1 A.T. PHILLIPS,2 and J.B. ROSEN3. ABSTRACT. We ...
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Summary: This work uses a simplified protein chain representation and a differentiable form of the Sun/Thomas/Dill energy function to test the CGU (convex ...
Dill K.A., Phillips A.T., Rosen J.B. Protein Structure and Energy Landscape Dependence on Sequence using a Continuous Energy Function. J. Comput. Biol. 1997 ...
Protein structure prediction and potential energy landscape analysis using continuous global minimization. Authors: Ken A. Dill, Andrew T. Phillips, J. Ben ...
Mar 29, 2019 · Typically, an energy function is a weighted-sum of multiple energy terms. The energy terms characterize specific structural features, especially ...
We describe a deep learning approach that captures aspects of the folding landscape, in particular the presence of structures in alternative energy minima.
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Recent advances in computational protein design have allowed exciting new insights into the sequence dependence of protein folding free energy landscapes.