SWAT4LS 2017
Semantic Web Applications and Tools for Health Care and Life Sciences

Table of Contents

• Preface
  
  

Long Papers

• Towards a FAIR Sharing of Scientific Experiments: Improving Discoverability and Reusability of Dielectric Measurements of Biological Tissues
  Md. Rezaul Karim, Matthias Heinrichs, Lars C. Gleim, Michael Cochez, Emily Porter, Alessandra La Gioia, Saqib Salahuddin, Stefan Decker, Martin O’Halloran, Oya Deniz Beyan
• Embracing Semantic Technology for Better Metadata Authoring in Biomedicine
  Attila L. Egyedi, Martin O’Connor, Marcos Martínez-Romero, Debra Willrett, Josef Hardi, John Graybeal, Mark Musen
• Achieving Pro-Active Guidance of Patients through ADL using Knowledge-Driven Activity Recognition and Complex Semantic Workflows
  William Van Woensel, Patrice Roy, Syed Sibte Raza Abidi
• BioKB – Text mining and semantic technologies for the biomedical content discovery
  Maria Biryukov, Valentin Gruès, Venkata Satagopam
• Blending FHIR RDF and OWL
  Harold Solbrig, Eric Prud’Hommeaux, Guoqian Jiang
• Clustering Cancer Drugs According to their Mechanisms of Action
  Syed Abdullah Ali, Riza Theresa Batista-Navarro
• Semantic Knowledge Graph Network Features for Drug Repurposing
  Tareq B. Malas, Roman Kudrin, Sergei Starikov, Dorien Peters, Marco Roos, Peter A.C. 't Hoen, Kristina Hettne
• Approach to an Ontology-based Mobile Intervention for Patients with Hypertension
  Tyler Wheeler, Samina Abidi
• Leveraging Logical Rules for Efficacious Representation of Large Orthology Datasets
  Tarcisio M. Farias, Hirokazu Chiba, Jesualdo T. Fernández-Breis
• Experiments to Create Ontology-based Disease Models for Diabetic Retinopathy from Different Biomedical Resources
  Mercedes Arguello Casteleiro, Catalina Martínez Costa, Julio Des-Diz, Maria Jesus Fernandez-Prieto, Chris Wroe, Diego Maseda-Fernandez, George Demetriou, Goran Nenadic, John Keane, Stefan Schulz, Robert Stevens
• Machine Learning Based Drug Indication Prediction Using Linked Open Data
  Remzi Çelebí, Özgün Erten, Michel Dumontier

Short Papers

• Enriching the Human Phenotype Ontology with Inferred Axioms from Textual Descriptions
  Shahad Kudama, Rafael Berlanga, Ernesto Jiménez-Ruiz
• Linking African Traditional Medicine Knowledge
  A. Gossa Lo, Victor de Boer, Stefan Schlobach
• A Semantic Web Framework for Behavioral User Modeling and Action Planning for Personalized Behavior Modification
  William Van Woensel, Wasif Baig, Syed Sibte Raza Abidi, Samina Abidi
• Developing a Semantic Web-based Framework for Executing the Clinical Quality Language Using FHIR
  Guoqian Jiang, Eric Prud’Hommeaux, Harold Solbrig

Posters and Demos

• Revealing Disease Similarities by Text Mining
  Alberto Calderone, Luana Licata, Elisa Micarelli, Livia Perfetto, Gianni Cesareni
• Optimizing Semantic Data Transformation Using High Performance Computing Techniques
  Josí Antonio Bernabí Díaz, María Del Carmen Legaz-García, Marco Roos, Josí Manuel García Carrasco, Jesualdo Tomás Fernández-Breis
• On Improving the Phenotype Acquisition Process Using Semantic Web Technology
  Ernesto Jimenez-Ruiz, Dag Hovland, Laura Slaughter, Tony Handstad, Arild Waaler
• BioGraph: Linking Biological Bases Across Organisms
  Luana Loubet Borges, Andrí Santanchè
• Assessment of FAIRness of Open Data Sources in Life Sciences
  Filip Pattyn, Bírínice Wulbrecht, Kenny Knecht, Hans Constandt
• Fuzzy Knowledge Base for Medical Training
  Ray Dueñas Jimínez, Andrí Santanchè, Roger Vieira Horvat, Marcelo Schweller, Tiago de Araujo Guerra Grangeia, Marco Antonio Carvalho-Filho
• The FAIRification of Data and the Potential of FAIR Resources Demonstrated, in Practice, at the Rome Bring Your Own Data Workshop
  Claudio Carta, Marco Roos, Annika Jacobsen, Rajaram Kaliyaperumal, Mark Thompson, Mark Wilkinson, Ronald Cornet, Andra Waagmeester, David van Enckevort, Mascha Jansen, Luana Licata, Allegra Via, Domenica Taruscio
• LOD Surfer API: Web API for LOD Surfing Using Class-Class Relationships in Life Sciences
  Atsuko Yamaguchi, Kouji Kozaki, Yasunori Yamamoto, Hiroshi Masuya, Norio Kobayashi
• Metadata-driven Interdisciplinary Research Projects Using RIKEN MetaDatabase
  Norio Kobayashi, Satoshi Kume, Hiroshi Masuya
• Bioschemas: schema.org for the Life Sciences
  Leyla Jael García Castro, Olga X. Giraldo, Alexander Garcia, Michel Dumontier, Bioschemas Community
• Document-centric Workflow: a Framework for Ontology Development
  Aisha Blfgeh, Phillip Lord
• Visualizing Metabolomics Data in Directed Biological Networks
  Ryan Miller, Denise Slenter, Martina Kutmon, Jonathan Melius, Georg Summer, Chris Evelo, Egon Willighagen
• Shō-coin: A Knowledge-Based Economy for Life Sciences
  Alexander Garcia, Erick Antezana, Jael García, Olga X. Giraldo, Pjotr Prins, Rutger Vos
• Towards an Ontology for Sharing Information on Pharmacovigilance Signals
  Pantelis Natsiavas, Magnus Wallenberg, Vassilis Koutkias
• Construction of Knowledge-Base for Clinical Interpretation of Genomic Variants
  Mayumi Kamada, Toshiaki Katayama, Shuichi Kawashima, Ryosuke Kojima, Masahiko Nakatsui, Yasushi Okuno
• DISQOVER: Through the Large Data Landscape of Life Sciences
  Berenice Wulbrecht, Filip Pattyn, Kenny Knecht, Hans Constandt
• SPARQL-Proxy: A Generic Proxy Server for SPARQL Endpoint
  Shuichi Kawashima, Toshiaki Katayama
• SPARQList: Markdown-Based Highly Configurable REST API Hosting Server for SPARQL
  Toshiaki Katayama, Shuichi Kawashima
• Message Exchange between Independent Implementations of Servers in the Nexus-PORTAL-DOORS System
  Adam Craig, Seung-Ho Bae, Carl Taswell
• Overview of a Suite of Tools and Training Material for Implementing FAIR Data Principles
  Mark Thompson, Luiz Olavo Bonino Da Silva Santos, Kees Burger, Rajaram Kaliyaperumal, Erik Schultes, Annika Jacobsen, Claudio Carta, Richard Finkers, David van Enckevort, Mascha Jansen, Barend Mons, Marco Roos