| STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets D Szklarczyk, AL Gable, D Lyon, A Junge, S Wyder, J Huerta-Cepas, ... Nucleic acids research 47 (D1), D607-D613, 2019 | 15965 | 2019 |
| Bioconda: sustainable and comprehensive software distribution for the life sciences B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ... Nature methods 15 (7), 475, 2018 | 1267 | 2018 |
| Bioconda: A sustainable and comprehensive software distribution for the life sciences B Grüning, R Dale, A Sjödin, J Rowe, BA Chapman, CH Tomkins-Tinch, ... bioRxiv, 207092, 2017 | 1267 | 2017 |
| Transcriptome and Metabolite Changes during Hydrogen Cyanamide-Induced Floral Bud Break in Sweet Cherry IA Ionescu, G López-Ortega, M Burow, A Bayo-Canha, A Junge, ... Frontiers in plant science 8, 1233, 2017 | 100 | 2017 |
| KeyPathwayMiner 4.0: condition-specific pathway analysis by combining multiple omics studies and networks with Cytoscape N Alcaraz, J Pauling, R Batra, E Barbosa, A Junge, AGL Christensen, ... BMC Systems Biology 8 (1), 99, 2014 | 75 | 2014 |
| RAIN: RNA–protein Association and Interaction Networks A Junge, JC Refsgaard, C Garde, X Pan, A Santos, F Alkan, C Anthon, ... Database 2017 (1), 2017 | 73 | 2017 |
| Diseases 2.0: a weekly updated database of disease–gene associations from text mining and data integration D Grissa, A Junge, TI Oprea, LJ Jensen Database 2022, baac019, 2022 | 72 | 2022 |
| Automated medical coding on MIMIC-III and MIMIC-IV: a critical review and replicability study J Edin, A Junge, JD Havtorn, L Borgholt, M Maistro, T Ruotsalo, L Maaløe Proceedings of the 46th International ACM SIGIR Conference on Research and …, 2023 | 47 | 2023 |
| RNAscClust: clustering RNA sequences using structure conservation and graph based motifs M Miladi, A Junge, F Costa, SE Seemann, J Hull Havgaard, J Gorodkin, ... Bioinformatics, 2017 | 33 | 2017 |
| CoCoScore: context-aware co-occurrence scoring for text mining applications using distant supervision A Junge, LJ Jensen Bioinformatics 36 (1), 264-271, 2020 | 28 | 2020 |
| On the hunt for the alternate host of Hemileia vastatrix A Koutouleas, H Jørgen Lyngs Jørgensen, B Jensen, JPB Lillesø, ... Ecology and evolution 9 (23), 13619-13631, 2019 | 18 | 2019 |
| Highlights from the tenth ISCB Student Council Symposium 2014 F Rahman, K Wilkins, A Jacobsen, A Junge, E Vicedo, D DeBlasio, ... BMC Bioinformatics 16 (Suppl 2), A1, 2015 | 17 | 2015 |
| Assessing the miRNA sponge potential of RUNX1T1 in t (8; 21) acute myeloid leukemia A Junge, R Zandi, JH Havgaard, J Gorodkin, JB Cowland Gene 615, 35-40, 2017 | 14 | 2017 |
| Highlights from the 11th ISCB Student Council Symposium 2015 K Wilkins, M Hassan, M Francescatto, J Jespersen, RG Parra, B Cuypers, ... BMC Bioinformatics 17 (3), 203, 2016 | 5 | 2016 |
| Language Model Re-rankers are Steered by Lexical Similarities L Hagström, E Nie, R Halifa, H Schmid, R Johansson, A Junge arXiv preprint arXiv:2502.17036, 2025 | | 2025 |
| Clusters of mammalian conserved RNA structures in UTRs associate with RBP binding sites VP Gadekar, AW Munk, M Miladi, A Junge, R Backofen, SE Seemann, ... NAR Genomics and Bioinformatics 6 (3), lqae089, 2024 | | 2024 |
| Bioconda: Sustainable and comprehensive software distribution for the life sciences R Dale, B Grüning, A Sjödin, J Rowe, BA Chapman, CH Tomkins-Tinch, ... Nature Methods 15 (7), 475-476, 2018 | | 2018 |
| Pig chromosome X long non-coding RNA annotation and expression S Djebali, O Palasca, C Anton, T Derrien, O Madsen, M Thomas, E Floden, ... PAG XXV-Plant and Animal Genome Conference, 2017 | | 2017 |
| A Study of Pig Chromosome X lncRNA Expression S Djebali, O Palasca, C Anthon, T Derrien, O Madsen, M Thomas, ... The Plant and Animal Genome XXIIV Conference (PAG), 2017 | | 2017 |
| Integration and visualization of non-coding RNA and protein interaction networks A Junge, JC Refsgaard, C Garde, X Pan, AS Delgado, C Anthon, F Alkan, ... First Annual Danish Bioinformatics Conference, 2015 | | 2015 |
Lars Juhl JensenUniversity of CopenhagenVerified email at cpr.ku.dk
