| SingleCellNet: a computational tool to classify single cell RNA-Seq data across platforms and across species Y Tan, P Cahan Cell Systems, 2019 | 296 | 2019 |
| Understanding development and stem cells using single cell-based analyses of gene expression P Kumar, Y Tan, P Cahan Development 144 (1), 17-32, 2017 | 161 | 2017 |
| SCD1 and SCD2 form a complex that functions with the exocyst and RabE1 in exocytosis and cytokinesis JR Mayers, T Hu, C Wang, JJ Cárdenas, Y Tan, J Pan, SY Bednarek The Plant Cell 29 (10), 2610-2625, 2017 | 82 | 2017 |
| Strategies for Accurate Cell Type Identification in CODEX Multiplexed Imaging Data YG John W Hickey, Yuqi Tan, Garry Nolan Frontiers in Immunology, 2021 | 79 | 2021 |
| Gene Regulatory Network Analysis and Engineering Directs Development and Vascularization of Multilineage Human Liver Organoids MRE Jeremy J. Velazquez, Ryan LeGraw, Farzaneh Moghadam, Yuqi Tan, Jacquelyn ... Cell System, 2020 | 79* | 2020 |
| Annotation of spatially resolved single-cell data with STELLAR M Brbić, K Cao, JW Hickey, Y Tan, MP Snyder, GP Nolan, J Leskovec Nature Methods 19 (11), 1411-1418, 2022 | 70 | 2022 |
| Assessment of engineered cells using CellNet and RNA-seq AH Radley, RM Schwab, Y Tan, J Kim, EKW Lo, P Cahan Nature protocols 12 (5), 1089-1102, 2017 | 54 | 2017 |
| Valproate-induced neurodevelopmental deficits in Xenopus laevis tadpoles EJ James, J Gu, CM Ramirez-Vizcarrondo, M Hasan, TLS Truszkowski, ... Journal of Neuroscience 35 (7), 3218-3229, 2015 | 51 | 2015 |
| MONENSIN SENSITIVITY1 (MON1)/CALCIUM CAFFEINE ZINC SENSITIVITY1 (CCZ1)-mediated Rab7 activation regulates tapetal programmed cell death and pollen development Y Cui, Q Zhao, HT Xie, WS Wong, X Wang, C Gao, Y Ding, Y Tan, T Ueda, ... Plant physiology 173 (1), 206-218, 2017 | 36 | 2017 |
| Chuva de Sousa Lopes, SM; et al JJ Velazquez, R LeGraw, F Moghadam, Y Tan, J Kilbourne, JC Maggiore, ... Gene regulatory network analysis and engineering directs development and …, 2021 | 21 | 2021 |
| Chuva de Sousa Lopes SM et al (2021) Gene regulatory network analysis and engineering directs development and vascularization of multilineage human liver organoids JJ Velazquez, R LeGraw, F Moghadam, Y Tan, J Kilbourne, JC Maggiore, ... Cell Syst 12, 41-55, 0 | 15 | |
| Large-scale correlation network construction for unraveling the coordination of complex biological systems M Becker, H Nassar, C Espinosa, IA Stelzer, D Feyaerts, E Berson, ... Nature Computational Science 3 (4), 346-359, 2023 | 14 | 2023 |
| Concerted epithelial and stromal changes during progression of Barrett's Esophagus to invasive adenocarcinoma exposed by multi-scale, multi-omics analysis M Strasser, DL Gibbs, P Gascard, J Bons, JW Hickey, CM Schürch, Y Tan, ... bioRxiv, 2023.06. 08.544265, 2023 | 8 | 2023 |
| Transcriptome Dynamics of Hematopoietic Stem Cell Formation Revealed Using a Combinatorial Runx1 and Ly6a Reporter System STM Chen MJ..., Cahan P,..., Tan Y, ... Stem Cell Reports, 2020 | 8 | 2020 |
| Ligustrazine Prevents Intervertebral Disc Degeneration via Suppression of Aberrant TGFβ Activation in Nucleus Pulposus Cells S Liu, Y Cheng, Y Tan, J Dong, Q Bian BioMed research international 2019 (1), 5601734, 2019 | 7 | 2019 |
| T cell-mediated curation and restructuring of tumor tissue coordinates an effective immune response JW Hickey, M Haist, N Horowitz, C Caraccio, Y Tan, AJ Rech, ... Cell Reports 42 (12), 2023 | 6 | 2023 |
| Strategies for Accurate Cell Type Identification in CODEX Multiplexed Imaging Data. Front Immunol, 12, 727626 JW Hickey, Y Tan, GP Nolan, Y Goltsev | 5 | 2021 |
| Synthetic maturation of multilineage human liver organoids via genetically guided engineering JJ Velazquez, R LeGraw, F Moghadam, Y Tan, J Kilbourne, J Hislop, ... BioRxiv, 2020.05. 10.087445, 2020 | 5 | 2020 |
| Revealing the impact of lifestyle stressors on the risk of adverse pregnancy outcomes with multitask machine learning M Becker, J Dai, AL Chang, D Feyaerts, IA Stelzer, M Zhang, E Berson, ... Frontiers in pediatrics 10, 933266, 2022 | 4 | 2022 |
| Iterative transcription factor screening enables rapid generation of microglia-like cells from human iPSC S Liu, L Li, F Zhang, B van Sambeek, E Appleton, AHM Ng, ... bioRxiv, 2022.06. 03.494617, 2022 | 4 | 2022 |
Patrick CahanJohns Hopkins University School of MedicineVerified email at jhmi.edu
