Recently, with the development of both 3D sensors and 3D virtual network that bring the needs of interaction with the real world, many 3D applications burst out. However, it is difficult to understanding these three-dimensional scenes with a fixed program. Then, a data-driven method is required to process these 3D data, which brings a strong demand of 3D Deep Learning in 3D data. Towards this goal, with an end-to-end deep learning, the experiment is based on PointNet++, a well proposed method for feature extraction. The experiment optimizes the network structure and parameters to improve the classification results. Finally, the network is applied to tooth model for classification and identification so that the dental model can be found from different perspectives.