3D protein peptide chain search using an improved genetic algorithm
Z Yang, G Liu - Computational Science and Its Applications—ICCSA …, 2003 - Springer
Z Yang, G Liu
Computational Science and Its Applications—ICCSA 2003: International …, 2003•SpringerIn this paper, an efficient searching algorithm, namely intergeneration projection micro
genetic algorithm (IP-μGA) is introduced to search the three dimensional protein
conformations. A bond rotation model is developed, in which variables are the dihedral
angles along peptide main chain. The root mean square deviation (RMSD) is adopted as the
fitness function in the searching process and the template protein structures in protein data
bank (PDB) are used for comparison. The results of 3D peptide structures of examples show …
genetic algorithm (IP-μGA) is introduced to search the three dimensional protein
conformations. A bond rotation model is developed, in which variables are the dihedral
angles along peptide main chain. The root mean square deviation (RMSD) is adopted as the
fitness function in the searching process and the template protein structures in protein data
bank (PDB) are used for comparison. The results of 3D peptide structures of examples show …
Abstract
In this paper, an efficient searching algorithm, namely intergeneration projection micro genetic algorithm (IP-μGA) is introduced to search the three dimensional protein conformations. A bond rotation model is developed, in which variables are the dihedral angles along peptide main chain. The root mean square deviation (RMSD) is adopted as the fitness function in the searching process and the template protein structures in protein data bank (PDB) are used for comparison. The results of 3D peptide structures of examples show the effectiveness of present method.
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