User profiles for Adam C. English

Adam English

Spiral Genetics
Verified email at spiralgenetics.com
Cited by 4231

Mind the gap: upgrading genomes with Pacific Biosciences RS long-read sequencing technology

AC English, S Richards, Y Han, M Wang, V Vee, J Qu… - PloS one, 2012 - journals.plos.org
Many genomes have been sequenced to high-quality draft status using Sanger capillary
electrophoresis and/or newer short-read sequence data and whole genome assembly …

A robust benchmark for detection of germline large deletions and insertions

…, T Marschall, K Chen, X Fan, AC English… - Nature …, 2020 - nature.com
New technologies and analysis methods are enabling genomic structural variants (SVs) to
be detected with ever-increasing accuracy, resolution and comprehensiveness. To help …

Truvari: refined structural variant comparison preserves allelic diversity

AC English, VK Menon, RA Gibbs, GA Metcalf… - Genome Biology, 2022 - Springer
The fundamental challenge of multi-sample structural variant (SV) analysis such as merging
and benchmarking is identifying when two SVs are the same. Common approaches for …

Functional equivalence of genome sequencing analysis pipelines enables harmonized variant calling across human genetics projects

…, M Kher, E Banks, DC Ames, AC English… - Nature …, 2018 - nature.com
Hundreds of thousands of human whole genome sequencing (WGS) datasets will be
generated over the next few years. These data are more valuable in aggregate: joint analysis of …

PBHoney: identifying genomic variants via long-read discordance and interrupted mapping

AC English, WJ Salerno, JG Reid - BMC bioinformatics, 2014 - Springer
Background As resequencing projects become more prevalent across a larger number of
species, accurate variant identification will further elucidate the nature of genetic diversity and …

Assessing structural variation in a personal genome—towards a human reference diploid genome

AC English, WJ Salerno, OA Hampton… - BMC genomics, 2015 - Springer
Background Characterizing large genomic variants is essential to expanding the research
and clinical applications of genome sequencing. While multiple data types and methods are …

A syndromic neurodevelopmental disorder caused by de novo variants in EBF3

…, TK Johnson, CG Warr, DR Adams, CJ Adams… - The American Journal of …, 2017 - cell.com
Early B cell factor 3 (EBF3) is a member of the highly evolutionarily conserved Collier/Olf/EBF
(COE) family of transcription factors. Prior studies on invertebrate and vertebrate animals …

MARRVEL: integration of human and model organism genetic resources to facilitate functional annotation of the human genome

…, A Comjean, SE Mohr, CJ Adams, DR Adams… - The American Journal of …, 2017 - cell.com
One major challenge encountered with interpreting human genetic variants is the limited
understanding of the functional impact of genetic alterations on biological processes. …

[HTML][HTML] The undiagnosed diseases network: accelerating discovery about health and disease

RB Ramoni, JJ Mulvihill, DR Adams, P Allard… - The American Journal of …, 2017 - cell.com
Diagnosis at the edges of our knowledge calls upon clinicians to be data driven, cross-disciplinary,
and collaborative in unprecedented ways. Exact disease recognition, an element of …

A robust benchmark for germline structural variant detection

…, G Church, T Marschall, K Chen, X Fan, AC English… - BioRxiv, 2019 - biorxiv.org
New technologies and analysis methods are enabling genomic structural variants (SVs) to
be detected with ever-increasing accuracy, resolution, and comprehensiveness. Translating …