User profiles for Adam C. English
Adam EnglishSpiral Genetics Verified email at spiralgenetics.com Cited by 4231 |
Mind the gap: upgrading genomes with Pacific Biosciences RS long-read sequencing technology
Many genomes have been sequenced to high-quality draft status using Sanger capillary
electrophoresis and/or newer short-read sequence data and whole genome assembly …
electrophoresis and/or newer short-read sequence data and whole genome assembly …
A robust benchmark for detection of germline large deletions and insertions
New technologies and analysis methods are enabling genomic structural variants (SVs) to
be detected with ever-increasing accuracy, resolution and comprehensiveness. To help …
be detected with ever-increasing accuracy, resolution and comprehensiveness. To help …
Truvari: refined structural variant comparison preserves allelic diversity
AC English, VK Menon, RA Gibbs, GA Metcalf… - Genome Biology, 2022 - Springer
The fundamental challenge of multi-sample structural variant (SV) analysis such as merging
and benchmarking is identifying when two SVs are the same. Common approaches for …
and benchmarking is identifying when two SVs are the same. Common approaches for …
Functional equivalence of genome sequencing analysis pipelines enables harmonized variant calling across human genetics projects
…, M Kher, E Banks, DC Ames, AC English… - Nature …, 2018 - nature.com
Hundreds of thousands of human whole genome sequencing (WGS) datasets will be
generated over the next few years. These data are more valuable in aggregate: joint analysis of …
generated over the next few years. These data are more valuable in aggregate: joint analysis of …
PBHoney: identifying genomic variants via long-read discordance and interrupted mapping
AC English, WJ Salerno, JG Reid - BMC bioinformatics, 2014 - Springer
Background As resequencing projects become more prevalent across a larger number of
species, accurate variant identification will further elucidate the nature of genetic diversity and …
species, accurate variant identification will further elucidate the nature of genetic diversity and …
Assessing structural variation in a personal genome—towards a human reference diploid genome
AC English, WJ Salerno, OA Hampton… - BMC genomics, 2015 - Springer
Background Characterizing large genomic variants is essential to expanding the research
and clinical applications of genome sequencing. While multiple data types and methods are …
and clinical applications of genome sequencing. While multiple data types and methods are …
A syndromic neurodevelopmental disorder caused by de novo variants in EBF3
Early B cell factor 3 (EBF3) is a member of the highly evolutionarily conserved Collier/Olf/EBF
(COE) family of transcription factors. Prior studies on invertebrate and vertebrate animals …
(COE) family of transcription factors. Prior studies on invertebrate and vertebrate animals …
MARRVEL: integration of human and model organism genetic resources to facilitate functional annotation of the human genome
One major challenge encountered with interpreting human genetic variants is the limited
understanding of the functional impact of genetic alterations on biological processes. …
understanding of the functional impact of genetic alterations on biological processes. …
[HTML][HTML] The undiagnosed diseases network: accelerating discovery about health and disease
Diagnosis at the edges of our knowledge calls upon clinicians to be data driven, cross-disciplinary,
and collaborative in unprecedented ways. Exact disease recognition, an element of …
and collaborative in unprecedented ways. Exact disease recognition, an element of …
A robust benchmark for germline structural variant detection
New technologies and analysis methods are enabling genomic structural variants (SVs) to
be detected with ever-increasing accuracy, resolution, and comprehensiveness. Translating …
be detected with ever-increasing accuracy, resolution, and comprehensiveness. Translating …