Background The availability of multiple, essentially complete genome sequences of prokaryotes
and eukaryotes spurred both the demand and the opportunity for the construction of an …

Background Sequencing the genomes of multiple, taxonomically diverse eukaryotes
enables in-depth comparative-genomic analysis which is expected to help in reconstructing …

The availability of multiple, complete eukaryotic genome sequences allows one to address
many fundamental evolutionary questions on genome scale. One such important, long-…

Orthologous genes from distant eukaryotic species, eg animals and plants, share up to 25–30%
intron positions. However, the relative contributions of evolutionary conservation and …

Most of the eukaryotic protein-coding genes are interrupted by multiple introns. A substantial
fraction of introns occupy the same position in orthologous genes from distant eukaryotes, …

In an attempt to gain insight into the dynamics of intron evolution in eukaryotic protein-coding
genes, the distributions of old introns, that are conserved between distant phylogenetic …

A comparison of the nucleotide sequences around the splice junctions that flank old (shared
by two or more major lineages of eukaryotes) and new (lineage-specific) introns in …

Comparison of the exon–intron structures of ancient eukaryotic paralogs reveals the absence
of conserved intron positions in these genes. This is in contrast to the conservation of …

Motivated by applications in chemistry and other sciences, we study the expressive power of
message-passing neural networks for geometric graphs, whose node features correspond …

The steady increase in performance and speed of modern integrated circuits is continuously
supported by constant miniaturization of complementary metal-oxide semiconductor (CMOS…