Automated DNA fiber tracking and measurement

Y Wang, P Chastain, PT Yap, JZ Cheng… - … Imaging: From Nano …, 2011 - ieeexplore.ieee.org
… A fully automatic DNA fiber tracking and pattern analysis method, namely CASA, is proposed
in this paper. Experimental results show that the performance of our method is statistically …

Automatic DNA replication tract measurement to assess replication and repair dynamics at the single-molecule level

L Li, AM Kolinjivadi, KH Ong, DM Young… - …, 2022 - academic.oup.com
… diverse DNA fibre analysis investigations, we propose DNA Stranding… automatic DNA fibre
analysis algorithm that can perform a more accurate rapid detection and quantification of DNA

An open-source algorithm for rapid unbiased determination of DNA fiber length

P Ghesquière, A Elsherbiny, E Fortier, M McQuaid… - DNA repair, 2019 - Elsevier
… degree of variability when manually measuring DNA fibers, which compromises data
reproducibility and renders analyses prone to bias. The automated segmentation method that we …

Fully Automated and AI-Assisted Optical Fiber Sensing System for Multiplexed and Continuous Brain Monitoring

Y Zhang, N Zhang, Y Hu, C Pereira, M Fertleman… - ACS …, 2024 - ACS Publications
… bundle sensing system designed for the simultaneous measurement of six brain biomarkers.
A flexible silicone elastomer biofluid extraction catheter (outer diameter: 2.5 mm, inner …

Demonstration of the DNA Fiber Assay for Investigating DNA Damage and Repair Dynamics Induced by Nanoparticles

S Patel, P Chastain, D Bijukumar - JoVE (Journal of Visualized …, 2023 - jove.com
DNA fiber assay, which includes pulse labeling with nucleotide analogs, cell lysis, spreading
the pulse-labeled DNA fibers … the automated DNA fiber tracking and measurement program …

Visualization of the terminal structure of rice chromosomes 6 and 12 with multicolor FISH to chromosomes and extended DNA fibers

N Ohmido, K Kijima, I Ashikawa, JH de Jong… - Plant molecular …, 2001 - Springer
… The linearization of chromosomal DNA also allows direct automated measurements of FISH
tracks by computerized imaging methods for a direct estimation of their molecular size and …

Telomere length measurement by molecular combing

VFS Kahl, JAM Allen, CB Nelson… - Frontiers in cell and …, 2020 - frontiersin.org
… ) to measure telomere length on stretched DNA fibers. We used TCA to measure telomere
erosion … , and we evaluated fully automated telomere length measurement using FiberStudio ® …

Self-heating tilted fiber Bragg grating device for melt curve analysis of solid-phase DNA hybridization and thermal cycling

J Koppert, H Jean-Ruel, D O'Neill, C Harder… - Analytical and …, 2019 - Springer
… –integral–derivative control of the fiber hot-wire heating during fluorescence measurement
acquisition. Melt curve analysis could then be thermally consistent during DNA spot analysis. …

Behavior of DNA fibers stretched by precise meniscus motion control

K Otobe, T Ohtani - Nucleic acids research, 2001 - academic.oup.com
… The microscope stage is automated with stepping motors … While monitoring the droplet size
can be adjusted by hand … of a trace between its starting and end points, was measured. While …

Automatic measurement of sister chromatid exchange frequency.

GW Zack, WE Rogers, SA Latt - Journal of Histochemistry & …, 1977 - journals.sagepub.com
… An automatic system for detecting and counting sister chromatid … was estimated from size
and shape measurements. An analysis … The processing time for this automated sister chromatid …