AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models
…, S Nair, C Natassia, G Yordanova… - Nucleic acids …, 2022 - academic.oup.com
The AlphaFold Protein Structure Database (AlphaFold DB, https://alphafold.ebi.ac.uk ) is an
openly accessible, extensive database of high-accuracy protein-structure predictions. …
openly accessible, extensive database of high-accuracy protein-structure predictions. …
The COVID-19 Data Portal: accelerating SARS-CoV-2 and COVID-19 research through rapid open access data sharing
…, M Ventouratou, P Walter, G Yordanova… - Nucleic acids …, 2021 - academic.oup.com
The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) pandemic will be
remembered as one of the defining events of the 21st century. The rapid global outbreak has had …
remembered as one of the defining events of the 21st century. The rapid global outbreak has had …
PDX Finder: A portal for patient-derived tumor xenograft model discovery
…, S Neuhauser, A Mosaku, G Yordanova… - Nucleic acids …, 2019 - academic.oup.com
Patient-derived tumor xenograft (PDX) mouse models are a versatile oncology research
platform for studying tumor biology and for testing chemotherapeutic approaches tailored to …
platform for studying tumor biology and for testing chemotherapeutic approaches tailored to …
Toward a data infrastructure for the Plant Cell Atlas
N Fahlgren, M Kapoor, G Yordanova… - Plant …, 2023 - academic.oup.com
We review how a data infrastructure for the Plant Cell Atlas might be built using existing
infrastructure and platforms. The Human Cell Atlas has developed an extensive infrastructure for …
infrastructure and platforms. The Human Cell Atlas has developed an extensive infrastructure for …
PSII-6 Computational Tools and Resources for Analysis and Exploration of Single-Cell Rnaseq Data in Agriculture
…, A Sokolov, ES Ventura, G Yordanova… - Journal of Animal …, 2023 - academic.oup.com
The agriculture genomics community has numerous data submission standards available
but little experience describing and storing single-cell (eg, scRNAseq) data. Other single-cell …
but little experience describing and storing single-cell (eg, scRNAseq) data. Other single-cell …
Building a FAIR data ecosystem for incorporating single-cell transcriptomics data into agricultural genome to phenome research
The agriculture genomics community has numerous data submission standards available,
but the standards for describing and storing single-cell (SC, eg, scRNA-seq) data are …
but the standards for describing and storing single-cell (SC, eg, scRNA-seq) data are …
Making Tools that People Will Use: User-Centered Design in Computational Biology Research
M Goldman, N Gehlenborg - BIOCOMPUTING 2021: Proceedings of …, 2020 - World Scientific
User-Centered Design (UCD) focuses on deeply understanding the needs of users and
ensuring these needs are met by tools and software. UCD methodology aims to make tools …
ensuring these needs are met by tools and software. UCD methodology aims to make tools …
[CITATION][C] AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models
…, D Mandar, N Sreenath, N Cindy, Y Galabina… - Nucleic Acids Res, 2021
[CITATION][C] Hassabis Demis, Velankar Sameer. AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with …
…, D Mandar, N Sreenath, N Cindy, Y Galabina… - Nucleic Acids Research, 2021
[CITATION][C] Demis HASSABIS a Sameer VELANKAR, 2022. AlphaFold Protein Structure Database: Massively expanding the structural coverage of protein-sequence …
…, N Sreenath, C NATASSIA, G YORDANOVA… - Nucleic Acids Research