High-performance drug discovery: computational screening by combining docking and molecular dynamics simulations

N Okimoto, N Futatsugi, H Fuji, A Suenaga… - PLoS computational …, 2009 - journals.plos.org
Virtual compound screening using molecular docking is widely used in the discovery of new
lead compounds for drug design. However, this method is not completely reliable and …

Melloddy: Cross-pharma federated learning at unprecedented scale unlocks benefits in qsar without compromising proprietary information

…, P Antal, D Marcus, N Do Huu, H Fuji… - Journal of chemical …, 2023 - ACS Publications
Federated multipartner machine learning has been touted as an appealing and efficient
method to increase the effective training data volume and thereby the predictivity of models, …

Prediction of ligand binding affinity to target proteins by molecular mechanics theoretical calculation

H Fuji, F Qi, L Qu, Y Takaesu… - Chemical and …, 2017 - jstage.jst.go.jp
Accurate estimation of ligand–receptor binding affinity is indispensable for computer-assisted
drug discovery and structure-based drug design. Many computational scoring functions for …

Peptide HIV-1 integrase inhibitors from HIV-1 gene products

…, Y Pommier, JA Beutler, W Sugiura, H Fuji… - Journal of medicinal …, 2010 - ACS Publications
Anti-HIV peptides with inhibitory activity against HIV-1 integrase (IN) have been found in
overlapping peptide libraries derived from HIV-1 gene products. In a strand transfer assay using …

Derivatives of 5-nitro-furan-2-carboxylic acid carbamoylmethyl ester inhibit RNase H activity associated with HIV-1 reverse transcriptase

H Fuji, E Urano, Y Futahashi, M Hamatake… - Journal of medicinal …, 2009 - ACS Publications
The RNase H activity associated with human immunodeficiency virus type 1 (HIV-1) is an
attractive target for an antiretroviral drug development. We screened 20000 small-molecular-…

Mechanism of drug resistance of hemagglutinin of influenza virus and potent scaffolds inhibiting its function

H Yanagita, N Yamamoto, H Fuji, X Liu… - ACS Chemical …, 2012 - ACS Publications
Highly pathogenic influenza viruses have become a global threat to humans. It is important
to select an effective therapeutic option suitable for the subtypes in an epidemic or pandemic. …

Discovery of novel scaffolds for γ-secretase modulators without an arylimidazole moiety

R Sekioka, E Honjo, S Honda, H Fuji… - Bioorganic & Medicinal …, 2018 - Elsevier
Gamma-secretase modulators (GSMs) selectively inhibit the production of amyloid-β 42 (Aβ42)
and may therefore be useful in the management of Alzheimer’s disease. Most …

Structural insight of DNA topoisomerases I from camptothecin-producing plants revealed by molecular dynamics simulations

…, A Meeprasert, T Rungrotmongkol, H Fuji… - Phytochemistry, 2015 - Elsevier
DNA topoisomerase I (Top1) catalyzes changes in DNA topology by cleaving and rejoining
one strand of the double stranded (ds)DNA. Eukaryotic Top1s are the cellular target of the …

Ab initio protein structure prediction with force field parameters derived from water‐phase quantum chemical calculation

D Katagiri, H Fuji, S Neya… - Journal of computational …, 2008 - Wiley Online Library
Molecular dynamics (MD) simulations are extensively used in the study of the structures and
functions of proteins. Ab initio protein structure prediction is one of the most important …

[BOOK][B] Hokusai 36 Views of Mount Fuji

C Berna, E Thomsen - 2023 - books.google.com
… The 36 Views of Mt Fuji are religious prints. But different from the typical Christian … if Mt Fuji
is shown to have a pervading influence on their lives. The admiration and worship of Mt Fuji is …