Improved characterisation of clinical text through ontology-based vocabulary expansion

LT Slater, W Bradlow, S Ball, R Hoehndorf… - Journal of biomedical …, 2021 - Springer
… retrieval in clinical and literature settings. Most importantly, we have shown that the …
improves the power of an ontology-based characterisation and analysis of patients via clinical text

[BOOK][B] Development of a methodology and an ontological schema for medical terminology

JE Rogers - 2004 - search.proquest.com
terminology has correspondingly broadened from cause of death (ICD) to all aspects of clinical
… The detailed reasons for this move to a new technical foundation for clinical terminology

Exploring binary relations for ontology extension and improved adaptation to clinical text

LT Slater, R Hoehndorf, A Karwath, GV Gkoutos - bioRxiv, 2020 - biorxiv.org
better characterisation of text, we present a case study, using the method to learn an adaptation
to the Disease Ontology using text … which enables their use in ontology-based analysis [2]…

Toward clearer recognition and easier usefulness: development of a cross-lingual atherosclerotic cerebrovascular disease ontology

H Ma, L Shen, J Wang, S Wang, M Wang, M Wang… - Database, 2024 - academic.oup.com
… We developed the ontology based on the combination of the … an ontology-based semantic
model for query expansion to … of clinical text Improve the characterization of clinical text by …

Komenti: a semantic text mining framework

LT Slater, W Bradlow, R Hoehndorf, DFA Motti, S Ball… - bioRxiv, 2020 - biorxiv.org
… , which can improve the power of text mining and ontology-based … of biomedical ontologies
for text characterisation and analysis. … Komenti also includes a novel vocabulary expansion

XML, ontologies, and their clinical applications

C Yu, B Shen - Translational Biomedical Informatics: A Precision …, 2016 - Springer
… Moreover, ontologies have been attracting increased attention in various clinical fields in …
from diverse biological, literature, and annotation sources in a unified manner. Ontology-based

[HTML][HTML] Towards similarity-based differential diagnostics for common diseases

K Slater, A Karwath, JA Williams, S Russell… - … in biology and medicine, 2021 - Elsevier
Ontology-based phenotype profiles have been utilised for the purpose of differential … from
other ontologies, improved performance at a semantic similarity-based patient characterisation

Synonym extraction and abbreviation expansion with ensembles of semantic spaces

A Henriksson, H Moen, M Skeppstedt… - Journal of biomedical …, 2014 - Springer
enhanced by creating ensembles of (distributional) semantic spaces – both with different
model parameter configurations and induced from different genres of text… extraction/expansion. …

[HTML][HTML] Multi-faceted semantic clustering with text-derived phenotypes

K Slater, JA Williams, A Karwath, H Fanning… - … in biology and medicine, 2021 - Elsevier
… extraction, which can lead to improved insight into biomedical and clinical entities [1]. …
presented a novel algorithm for characterising ontology-based groupings. Using this method, we …

[CITATION][C] Ontology-based entity tagging and normalization in the biomedical domain

Zİ Karadeniz Erol - 2019 - … . Institute for Graduate Studies in …