Predicting reaction conditions from limited data through active transfer learning

E Shim, JA Kammeraad, Z Xu, A Tewari, T Cernak… - Chemical …, 2022 - pubs.rsc.org
Transfer and active learning have the potential to accelerate the development of new chemical
reactions, using prior data and new experiments to inform models that adapt to the target …

Learning to predict reaction conditions: relationships between solvent, molecular structure, and catalyst

E Walker, J Kammeraad, J Goetz… - Journal of chemical …, 2019 - ACS Publications
Reaction databases provide a great deal of useful information to assist planning of experiments
but do not provide any interpretation or chemical concepts to accompany this information…

Digging Deeper into the Methods of Computational Chemistry

J Kammeraad - 2020 - deepblue.lib.umich.edu
This dissertation applies a skeptical but hopeful analytical paradigm and the tools of linear
algebra, numerical methods, and machine learning to a diversity of problems in …

Torsionnet: A reinforcement learning approach to sequential conformer search

…, E Punzalan, R Jiang, J Kammeraad… - Advances in …, 2020 - proceedings.neurips.cc
Molecular geometry prediction of flexible molecules, or conformer search, is a long-standing
challenge in computational chemistry. This task is of great importance for predicting structure…

What does the machine learn? Knowledge representations of chemical reactivity

JA Kammeraad, J Goetz, EA Walker… - Journal of chemical …, 2020 - ACS Publications
In a departure from conventional chemical approaches, data-driven models of chemical
reactions have recently been shown to be statistically successful using machine learning. These …

Advances in parallel heat bath configuration interaction

DK Dang, JA Kammeraad… - The Journal of Physical …, 2022 - ACS Publications
Heat-bath configuration interaction (HCI) is a deterministic method that approaches the full CI
limit at greatly reduced computational cost. In this work, computational improvements to the …

Discovery of conical intersection mediated photochemistry with growing string methods

C Aldaz, JA Kammeraad… - Physical Chemistry …, 2018 - pubs.rsc.org
Conical intersections (CIs) are important features of photochemistry that determine yields and
selectivity. Traditional CI optimizers require significant human effort and chemical intuition, …

Conformational Sampling over Transition-Metal-Catalyzed Reaction Pathways: Toward Revealing Atroposelectivity

JA Kammeraad, S Das, AJ Arguelles, FB Sayyed… - Organic …, 2024 - ACS Publications
The Py-Conformational-Sampling (PyCoSa) technique is introduced as a systematic
computational means to sample the configurational space of transition-metal-catalyzed …

Polyad: Predicting and fitting mixed vibrational states to a multi-resonant Hamiltonian

J Kammeraad - 2014 - digitalcommons.hope.edu
Polyad is a computer program that constructs sets of strongly interacting vibrational states
from resonant interactions. It utilizes the multi-resonant Hamiltonian model which accounts for …

Simulating Electron Transfer Reactions in Solution: Radical-Polar Crossover

KC Skinner, JA Kammeraad, T Wymore… - The Journal of …, 2023 - ACS Publications
Single-electron transfer (SET) promotes a wide variety of interesting chemical transformations,
but modeling of SET requires a careful treatment of electronic and solvent effects to give …