Unsupervised segmentation and quantification of anatomical knee features: data from the Osteoarthritis Initiative

JG Tamez-Pena, J Farber, PC Gonzalez… - IEEE transactions on …, 2012 - ieeexplore.ieee.org
JG Tamez-Pena, J Farber, PC Gonzalez, E Schreyer, E Schneider, S Totterman
IEEE transactions on biomedical engineering, 2012ieeexplore.ieee.org
This paper presents a fully automated method for segmenting articular knee cartilage and
bone from in vivo 3-D dual echo steady state images. The magnetic resonance imaging
(MRI) datasets were obtained from the Osteoarthritis Initiative (OAI) pilot study and include
longitudinal images from controls and subjects with knee osteoarthritis (OA) scanned twice
at each visit (baseline, 24 month). Initially, human experts segmented six MRI series. Five of
the six resultant sets served as reference atlases for a multiatlas segmentation algorithm …
This paper presents a fully automated method for segmenting articular knee cartilage and bone from in vivo 3-D dual echo steady state images. The magnetic resonance imaging (MRI) datasets were obtained from the Osteoarthritis Initiative (OAI) pilot study and include longitudinal images from controls and subjects with knee osteoarthritis (OA) scanned twice at each visit (baseline, 24 month). Initially, human experts segmented six MRI series. Five of the six resultant sets served as reference atlases for a multiatlas segmentation algorithm. The methodology created precise knee segmentations that were used to extract articular cartilage volume, surface area, and thickness as well as subchondral bone plate curvature. Comparison to manual segmentation showed Dice similarity coefficient (DSC) of 0.88 and 0.84 for the femoral and tibial cartilage. In OA subjects, thickness measurements showed test-retest precision ranging from 0.014 mm (0.6%) at the femur to 0.038 mm (1.6%) at the femoral trochlea. In the same population, the curvature test-retest precision ranged from 0.0005 mm -1 (3.6%) at the femur to 0.0026 mm -1 (11.7%) at the medial tibia. Thickness longitudinal changes showed OA Pearson correlation coefficient of 0.94 for the femur. In conclusion, the fully automated segmentation methodology produces reproducible cartilage volume, thickness, and shape measurements valuable for the study of OA progression.
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