… information about macromolecular structures. Traditionally this … atomium, a modern,
lightweight, Python library for parsing, … , pdb2json, which uses atomium to give a consistent JSON …

… Python library atomium makes studying and analysing protein structures easier for Python
… for reasons that will be outlined shortly, it was decided to create a novel Python parser. This …

… To this end, we developed PDBeCIF, an open-source Python … a representative of a current
mmCIF parser—atomium v1.0.9 [… is a pure algorithmic parser that does not make any structure …

… Read in PDB, mmCIF and MMTF (Bradley et al., 2017) files into a hierarchical representation
of structure. The parsers have been tested on the whole PDB, only throwing errors on a …

… Here, we present this Python library which we have made available on our GitHub
repository along with a user manual and tutorial. … Atomium—a python structure parser …

… Atomium are not included because they cannot correctly generate PDB file for any of the
input mmCIF structures … BeEM can parse complicated structures with long chain IDs and …

… Note also that the structure of the JSON response matches the structure of the query. (b) A
query requesting a single PDB object, by an ID given as … atomium—a python structure parser …

… backbone structures were used to search the Protein Data Bank using MASTER [22]. The
resulting matches were processed using Python scripts to … Atomium-a python structure parser …

… After acquiring corresponding structural file identifiers, each file was received and processed
using the Python parser library atomium, which allows for processing of structural files …

… the structures using the Python molecular structure and parser library, atomium (github.com/samirelanduk/atomium/…
Atomium automatically generates the biological assembly having the …