cyNeo4j: connecting Neo4j and Cytoscape
… Summary: We developed cyNeo4j, a Cytoscape App to link Cytoscape and Neo4j … cyNeo4j,
a Cytoscape app to link Cytoscape on the desktop to a server environment using a Neo4j …
a Cytoscape app to link Cytoscape on the desktop to a server environment using a Neo4j …
Graph databases in molecular biology
WMC da Silva, P Wercelens, MEMT Walter… - … in Bioinformatics and …, 2018 - Springer
… Cytoscape Footnote 1 , which is a software for analyses and visualization of biological networks…
Another Cytoscape plugin is the cyNeo4j [33], designed to link Cytoscape and Neo4j and …
Another Cytoscape plugin is the cyNeo4j [33], designed to link Cytoscape and Neo4j and …
A linked data graph approach to integration of immunological data
SAC Bukhari, J Mandell, SH Kleinstein… - … on Bioinformatics and …, 2019 - ieeexplore.ieee.org
… It also allows translation between the Neo4J graph format and the SBML/SIF format. CyNeo4j
[5] incorporates Neo4J into a network data visualization tool, Cytoscape [6], to make the …
[5] incorporates Neo4J into a network data visualization tool, Cytoscape [6], to make the …
LinkedImm: a linked data graph database for integrating immunological data
… Neo4J database that embodies the human metabolic network. It also allows translation
between the Neo4J … CyNeo4j [6] extends Cystoscape [7] by using Neo4J as a more efficient …
between the Neo4J … CyNeo4j [6] extends Cystoscape [7] by using Neo4J as a more efficient …
An overview of graph databases and their applications in the biomedical domain
… more compactly than Neo4j, Neo4j is faster at ingesting raw data than TigerGraph, and lastly,
… One good example is cyNeo4j (68), a Cytoscape (69, 70) app to link this popular network …
… One good example is cyNeo4j (68), a Cytoscape (69, 70) app to link this popular network …
[PDF][PDF] Wordnet exploration and visualization in neo4j-a tag cloud based approach
EG Caldarola, A Picariello, AM Rinaldi - Proceedings of the Eighth …, 2016 - academia.edu
… from Cytoscape v. 3 graph visualization tool. The Neo4j running instance has been accessed
via a specific plug-in, namely cyNeo4j, that converts the query results into Cytoscape table …
via a specific plug-in, namely cyNeo4j, that converts the query results into Cytoscape table …
[PDF][PDF] Enhancing the WordNet Exploration and Visualization in Neo4J with a Tag Cloud Based Approach
… from Cytoscape v.3 graph visualization tool. The Neo4j running instance has been accessed
via a specific plug-in, namely cyNeo4j, that converts the query results into Cytoscape table …
via a specific plug-in, namely cyNeo4j, that converts the query results into Cytoscape table …
Reactome graph database: Efficient access to complex pathway data
A Fabregat, F Korninger, G Viteri… - PLoS computational …, 2018 - journals.plos.org
… in a graph database can be queried more efficiently. Here we present the rationale behind
the adoption of a graph database (Neo4j) … The Neo4j graph database and its query language, …
the adoption of a graph database (Neo4j) … The Neo4j graph database and its query language, …
Big graph-based data visualization experiences: The wordnet case study
EG Caldarola, A Picariello… - 2015 7th international …, 2015 - ieeexplore.ieee.org
… graph database and in particular, we describe as a case study the WordNet database using
Neo4J and Cytoscape. We … The Neo4j running instance has been accessed via the cyNeo4j …
Neo4J and Cytoscape. We … The Neo4j running instance has been accessed via the cyNeo4j …
Experiences in wordnet visualization with labeled graph databases
… Neo4j implementation of WordNet. The Neo4j running instance has been accessed via the
cyNeo4j plugin, that converts the query results into Cytoscape table format. Afterward, starting …
cyNeo4j plugin, that converts the query results into Cytoscape table format. Afterward, starting …