pySODM: Simulating and optimizing dynamical models in Python 3

TW Alleman, CV Stevens, JM Baetens - Journal of Computational Science, 2023 - Elsevier
In this work we present our generic framework to construct, simulate and calibrate dynamical
systems in Python 3. Its goal is to reduce the time it takes to implement a dynamical system
with n-dimensional states represented by coupled ordinary differential equations (ODEs),
simulate the system deterministically or stochastically, and, calibrate the system using n-
dimensional data. We demonstrate our code's capabilities by building three models in the
context of two case studies. First, we forecast the yields of the enzymatic esterification …
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