Jump to content

V-ATPase

From Wikipedia, the free encyclopedia

This is the current revision of this page, as edited by My very best wishes (talk | contribs) at 03:56, 23 June 2024 (→Structure: probably not a good idea; there is no discussion on talk). The present address (URL) is a permanent link to this version.

(diff) ← Previous revision | Latest revision (diff) | Newer revision → (diff)
This article is about the vacuolar H+
 ATPase. For the gastric H+
/K+
 ATPase, see Hydrogen potassium ATPase. For the plant/fungal plasma membrane H+
 ATPase, see Proton ATPase.
V-ATPase
V-ATPase schematic
Identifiers
SymbolV-ATPase
TCDB3.A.2
OPM superfamily5
OPM protein2bl2
Membranome226
V-ATPase, subunit c (Vo)
Membrane-spanning region of the V-type sodium ATPase from Enterococcus hirae. Calculated hydrocarbon boundaries of the lipid bilayer are shown by red and blue dots
Identifiers
SymbolATP-synt_C
PfamPF00137
InterProIPR002379
PROSITEPDOC00526
SCOP21aty / SCOPe / SUPFAM
Available protein structures:
Pfam  structures / ECOD  
PDBRCSB PDB; PDBe; PDBj
PDBsumstructure summary
V-ATPase, subunit C (V1)
crystal structure of subunit C (vma5p) of the yeast v-atpase
Identifiers
SymbolV-ATPase_C
PfamPF03223
InterProIPR004907
SCOP21u7l / SCOPe / SUPFAM
Available protein structures:
Pfam  structures / ECOD  
PDBRCSB PDB; PDBe; PDBj
PDBsumstructure summary
V-ATPase, subunit I/a
Identifiers
SymbolV_ATPase_I
PfamPF01496
InterProIPR002490
SCOP23rrk / SCOPe / SUPFAM
TCDB3.A.2
Available protein structures:
Pfam  structures / ECOD  
PDBRCSB PDB; PDBe; PDBj
PDBsumstructure summary
V-ATPase, subunit E
Identifiers
SymbolvATP-synt_E
PfamPF01991
Pfam clanCL0255
InterProIPR002842
Available protein structures:
Pfam  structures / ECOD  
PDBRCSB PDB; PDBe; PDBj
PDBsumstructure summary
V-ATPase, subunit d/d2
crystal structure of subunit C (yeast subunit d) of v-atpase
Identifiers
SymbolvATP-synt_AC39
PfamPF01992
InterProIPR002843
SCOP21r5z / SCOPe / SUPFAM
Available protein structures:
Pfam  structures / ECOD  
PDBRCSB PDB; PDBe; PDBj
PDBsumstructure summary
V-ATPase, subunit H, N-terminal
crystal structure of the regulatory subunit H of the v-type atpase of saccharomyces cerevisiae
Identifiers
SymbolV-ATPase_H_N
PfamPF03224
Pfam clanCL0020
InterProIPR004908
SCOP21ho8 / SCOPe / SUPFAM
Available protein structures:
Pfam  structures / ECOD  
PDBRCSB PDB; PDBe; PDBj
PDBsumstructure summary
V-ATPase, subunit G
Identifiers
SymbolV-ATPase_G
PfamPF03179
Pfam clanCL0255
InterProIPR005124
Available protein structures:
Pfam  structures / ECOD  
PDBRCSB PDB; PDBe; PDBj
PDBsumstructure summary

Vacuolar-type ATPase (V-ATPase) is a highly conserved evolutionarily ancient enzyme with remarkably diverse functions in eukaryotic organisms.[1] V-ATPases acidify a wide array of intracellular organelles and pumps protons across the plasma membranes of numerous cell types. V-ATPases couple the energy of ATP hydrolysis to proton transport across intracellular and plasma membranes of eukaryotic cells. It is generally seen as the polar opposite of ATP synthase because ATP synthase is a proton channel that uses the energy from a proton gradient to produce ATP. V-ATPase however, is a proton pump that uses the energy from ATP hydrolysis to produce a proton gradient.

The Archaea-type ATPase (A-ATPase) is a related group of ATPases found in archaea that often work as an ATP synthase. It forms a clade V/A-ATPase with V-ATPase. Most members of either group shuttle protons (H+
), but a few members have evolved to use sodium ions (Na+
) instead.

Roles played by V-ATPases

[edit]

V-ATPases are found within the membranes of many organelles, such as endosomes, lysosomes, and secretory vesicles, where they play a variety of roles crucial for the function of these organelles. For example, the proton gradient across the yeast vacuolar membrane generated by V-ATPases drives calcium uptake into the vacuole through an H+
/Ca2+
 antiporter system.[2] In synaptic transmission in neuronal cells, V-ATPase acidifies synaptic vesicles.[3] Norepinephrine enters vesicles by V-ATPase [citation needed].

V-ATPases are also found in the plasma membranes of a wide variety of cells such as intercalated cells of the kidney, osteoclasts (bone resorbing cells), macrophages, neutrophils, sperm, midgut cells of insects, and certain tumor cells.[4] Plasma membrane V-ATPases are involved in processes such as pH homeostasis, coupled transport, and tumor metastasis. V-ATPases in the acrosomal membrane of sperm acidify the acrosome. This acidification activates proteases required to drill through the plasma membrane of the egg. V-ATPases in the osteoclast plasma membrane pump protons onto the bone surface, which is necessary for bone resorption. In the intercalated cells of the kidney, V-ATPases pump protons into the urine, allowing for bicarbonate reabsorption into the blood. In addition, other variety of biological processes, such as toxin delivery, viral entry, membrane targeting, apoptosis, regulation of cytoplasmic pH, proteolytic process, and acidification of intracellular systems, are important roles of V-ATPases.[5]

V-ATPases also play a significant role in cell morphogenesis development. Disruption of the gene vma-1 gene which encodes for the catalytic subunit (A) of the enzyme severely impairs the rate of growth, differentiation, and the capacity to produce viable spores in fungus Neurospora crassa. [6]

Structure

[edit]

The yeast V-ATPase is the best characterized. There are at least thirteen subunits identified to form a functional V-ATPase complex, which consists of two domains. The subunits belong to either the Vo domain (membrane associated subunits, lowercase letters on the figure) or the V1 domain (peripherally associated subunits, uppercase letters on the figure).

The V1 includes eight subunits, A-H, with three copies of the catalytic A and B subunits, three copies of the stator subunits E and G, and one copy of the regulatory C and H subunits. In addition, the V1 domain also contains the subunits D and F, which form a central rotor axle.[7] The V1 domain contains tissue-specific subunit isoforms including B, C, E, and G. Mutations to the B1 isoform result in the human disease distal renal tubular acidosis and sensorineural deafness.

The Vo domain contains six different subunits, a, d, c, c', c", and e, with the stoichiometry of the c ring still a matter of debate with a decamer being postulated for the tobacco hornworm (Manduca sexta) V-ATPase. The mammalian Vo domain contains tissue-specific isoforms for subunits a and d, while yeast V-ATPase contains two organelle-specific subunit isoforms of a, Vph1p, and Stv1p. Mutations to the a3 isoform result in the human disease infantile malignant osteopetrosis, and mutations to the a4 isoform result in distal renal tubular acidosis, in some cases with sensorineural deafness.

The V1 domain is responsible for ATP hydrolysis, whereas the Vo domain is responsible for proton translocation. ATP hydrolysis at the catalytic nucleotide binding sites on subunit A drives rotation of a central stalk composed of subunits D and F, which in turn drives rotation of a barrel of c subunits relative to the a subunit. The complex structure of the V-ATPase has been revealed through the structure of the M. Sexta and Yeast complexes that were solved by single-particle cryo-EM and negative staining, respectively.[8][9][10] These structures have revealed that the V-ATPase has a 3-stator network, linked by a collar of density formed by the C, H, and a subunits, which, while dividing the V1 and Vo domains, make no interactions with the central rotor axle formed by the F, D, and d subunits. Rotation of this central rotor axle caused by the hydrolysis of ATP within the catalytic AB domains results in the movement of the barrel of c subunits past the a subunit, which drives proton transport across the membrane. A stoichiometry of two protons translocated for each ATP hydrolyzed has been proposed by Johnson.[11]

In addition to the structural subunits of yeast V-ATPase, associated proteins that are necessary for assembly have been identified. These associated proteins are essential for Vo domain assembly and are termed Vma12p, Vma21p, and Vma22p.[12][13][14][15] Two of the three proteins, Vma12p and Vma22p, form a complex that binds transiently to Vph1p (subunit a) to aid its assembly and maturation.[14][16][17][18] Vma21p coordinates assembly of the Vo subunits as well as escorting the Vo domain into vesicles for transport to the Golgi.[19]

V1

[edit]

The V1 domain of the V-ATPase is the site of ATP hydrolysis. Unlike Vo, the V1 domain is hydrophilic.[5] This soluble domain consists of a hexamer of alternating A and B subunits, a central rotor D, peripheral stators G and E, and regulatory subunits C and H. Hydrolysis of ATP drives a conformational change in the six A|B interfaces and with it rotation of the central rotor D. Unlike with the ATP synthase, the V1 domain is not an active ATPase when dissociated.

V1 Subunits[20]
Subunit Human Gene Note
A, B ATP6V1A, ATP6V1B1, ATP6V1B2 Catalytic hexamer.
C ATP6V1C1, ATP6V1C2
D ATP6V1D Central rotor stalk, responsible for ion specificity.
E, G ATP6V1E1, ATP6V1E2, ATP6V1G1, ATP6V1G2, ATP6V1G3
F ATP6V1F
H ATP6V1H

Subunit C

[edit]

V-ATPase (Vacuolar-ATPase) C represents the C terminal subunit that is part of the V1 complex, and is localised to the interface between the V1 and Vo complexes.[21]

Subunit C function
[edit]

The C subunit plays an essential role in controlling the assembly of V-ATPase, acting as a flexible stator that holds together the catalytic (V1) and membrane (VO) sectors of the enzyme .[22] The release of subunit C from the ATPase complex results in the dissociation of the V1 and Vo subcomplexes, which is an important mechanism in controlling V-ATPase activity in cells. Essentially, by creating a high electrochemical gradient and low pH, this powers the enzyme to create more ATP.

Subunits E, G

[edit]

These related subunits make up the stalk(s) of A/V-ATPase. They are important in assembly, and may function as pushrods in activity. E has a cap to connect to A/B, while G does not.[20] They likely evolved from a single protein by gene duplication.[23]

Subunit H

[edit]
Main article: ATP6V1H

Subunit H, is only involved in activity and not in assembly. This subunit also acts as an inhibitor of free V1 subunits; it stops ATP hydrolysis when V1 and Vo are dissociated.[24]

Vo

[edit]

The Vo domain is responsible for proton translocation. Unlike the F-type ATP synthase, the Vo domain generally transports protons against their own concentration gradient. Rotation of the Vo domain transports the protons in movement coordinated with the V1 domain, which is responsible for ATP hydrolysis. The Vo domain is hydrophobic and composed of several dissociable subunits.[5] These subunits are present in the Vo domain to make this a functional proton translocase; they are described below.

Vo Subunits[20]
Subunit Human Gene Note
a/I ATP6V0A1, ATP6V0A2, ATP6V0A4
c ATP6V0B, ATP6V0C Ring of varied size.
d/C ATP6V0D1, ATP6V0D2
e ATP6V0E1, ATP6V0E2 9 kDa hydrophobic assembly protein.
AC45/S1 ATP6AP1 Accessory subunit
S2 ATP6AP2 Accessory subunit

Subunit a/I

[edit]

The 116kDa subunit (or subunit a) and subunit I are found in the Vo or Ao complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles.

The function of the 116-kDa subunit is not defined, but its predicted structure consists of 6–8 transmembranous sectors, suggesting that it may function similar to subunit a of FO.

Subunit d/C

[edit]

Subunit d in V-ATPases, called subunit C in A-ATPases, is a part of the Vo complex. They fit onto the middle of the c ring, so are thought to function as a rotor. There are two versions of this subunit in eukaryotes, d/d1 and d2.[25]

In mammals, d1 (ATP6V0D1) is the ubiquitously expressed version and d2 (ATP6V0D2) is expressed in specific cell types only.[25]

Subunit c

[edit]

Similar to the F-type ATP synthase, the transmembrane region of the V-ATPase includes a ring of membrane-spanning subunits that are primarily responsible for proton translocation. Dissimilar from the F-type ATP synthase, however, the V-ATPase has multiple related subunits in the c-ring; in fungi such as yeast there are three related subunits (of varied stoichiometry) and in most other eukaryotes there are two.

V-ATPase assembly

[edit]

Yeast V-ATPases fail to assemble when any of the genes that encode subunits are deleted except for subunits H and c".[26][27][28] Without subunit H, the assembled V-ATPase is not active,[13][29] and the loss of the c" subunit results in uncoupling of enzymatic activity.[27]

The precise mechanisms by which V-ATPases assembly are still controversial, with evidence suggesting two different possibilities. Mutational analysis and in vitro assays have shown that preassembled Vo and V1 domains can combine to form one complex in a process called independent assembly. Support for independent assembly includes the findings that the assembled Vo domain can be found at the vacuole in the absence of the V1 domain, whereas free V1 domains can be found in the cytoplasm and not at the vacuole.[30][31] In contrast, in vivo pulse-chase experiments have revealed early interactions between Vo and V1 subunits, to be specific, the a and B subunits, suggesting that subunits are added in a step-wise fashion to form a single complex in a concerted assembly process.[32]

V-ATPase evolution

[edit]

A relatively new technique called ancestral gene resurrection has shed new light on the evolutionary history of the V-ATPase. It has been shown how the V-ATPase structure of the ancestral form consisting of two different proteins evolves into the fungi version with three different proteins.[33][34][35] The V-Type ATPase is similar to the archaeal (so called) A-Type ATP synthase, a fact that supports an archaeal origin of eukaryotes (like Eocyte Hypothesis, see also Lokiarchaeota). The exceptional occurrence of some lineages of archaea with F-type and of some lineages of bacteria with A-type ATPase respectively is regarded as a result of horizontal gene transfer.[36]

Regulation of V-ATPase activity

[edit]

V-ATPases are known to be specifically inhibited by macrolide antibiotics, such as concanamycin (CCA) and balifomycin A1.[37] In vivo regulation of V-ATPase activity is accomplished by reversible dissociation of the V1 domain from the Vo domain. After initial assembly, both the insect Manduca sexta and yeast V-ATPases can reversibly disassemble into free Vo and V1 domains after a 2- to 5-minute deprivation of glucose.[30] Reversible disassembly may be a general mechanism of regulating V-ATPase activity, since it exists in yeast and insects. Reassembly is proposed to be aided by a complex termed RAVE (regulator of H+
-ATPase of vacuolar and endosomal membranes).[38] Disassembly and reassembly of V-ATPases does not require new protein synthesis but does need an intact microtubular network.[39]

Human diseases

[edit]

Osteopetrosis

[edit]

Osteopetrosis is generic name that represents a group of heritable conditions in which there is a defect in osteoclastic bone resorption. Both dominant and recessive osteopetrosis occur in humans.[40][41] Autosomal dominant osteopetrosis shows mild symptoms in adults experiencing frequent bone fractures due to brittle bones.[40] A more severe form of osteopetrosis is termed autosomal recessive infantile malignant osteopetrosis.[41][42][43] Three genes that are responsible for recessive osteopetrosis in humans have been identified. They are all directly involved in the proton generation and secretion pathways that are essential for bone resorption. One gene is carbonic anhydrase II (CAII), which, when mutated, causes osteopetrosis with renal tubular acidosis(type 3).[44] Mutations to the chloride channel ClC7 gene also lead to both dominant and recessive osteopetrosis.[40] Approximately 50% of patients with recessive infantile malignant osteopetrosis have mutations to the a3 subunit isoform of V-ATPase.[42] [45][46] In humans, 26 mutations have been identified in V-ATPase subunit isoform a3, found in osteoclasts, that result in the bone disease autosomal recessive osteopetrosis.[42][41][45][47]

Distal renal tubular acidosis (dRTA)

[edit]

The importance of V-ATPase activity in renal proton secretion is highlighted by the inherited disease distal renal tubular acidosis. In all cases, renal tubular acidosis results from a failure of the normal renal mechanisms that regulate systemic pH. There are four types of renal tubular acidosis. Type 1 is distal renal tubular acidosis and results from a failure of the cortical collecting duct to acidify the urine below pH 5.[48] Some patients with autosomal recessive dRTA also have sensorineural hearing loss.[49] Inheritance of this type of RTA results from either mutations to V-ATPase subunit isoform B1 or isoform a4 or mutations of band 3 (also called AE1), a Cl-/HCO3- exchanger.[49][50][51] Twelve different mutations to V-ATPase isoform B1[52] and twenty-four different mutations in a4 lead to dRTA.[52][49] Reverse transcription polymerase chain reaction studies have shown expression of the a4 subunit in the intercalated cell of the kidney and in the cochlea.[52] dRTA caused by mutations in the a4 subunit gene in some cases can be associated with deafness due to a failure to normally acidify the endolymph of the inner ear.[51]

X-linked myopathy with excessive autophagy (XMEA)

[edit]

X-linked myopathy with excessive autophagy is a rare genetic disease resulting from mutations in the VMA21 gene.[53] The disease has a childhood onset and results in a slowly progressive muscle weakness, typically beginning in the legs, and some patients can eventually require wheelchair assistance with advanced age. The Vma21 protein assists in assembly of the V-ATPase, and XMEA associated mutations result in decreased activity of the V-ATPase and increased lysosomal pH.[53]

Nomenclature

[edit]

The term Vo has a lowercase letter "o" (not the number "zero") in subscript. The "o" stands for oligomycin, which binds to the homologous region in F-ATPase. It is worth noting that the human gene notations at NCBI designate it as "zero" rather than the letter "o". For example, the gene for the human c subunit of Vo is listed in NCBI gene database as "ATP6V0C" (with a zero), rather than "ATP6VOC" (with an "o"). Many pieces of literature make this mistake as well.

See also

[edit]

References

[edit]
  1. ^ Nelson N, Perzov N, Cohen A, Hagai K, Padler V, Nelson H (January 2000). "The cellular biology of proton-motive force generation by V-ATPases". The Journal of Experimental Biology. 203 (Pt 1): 89–95. doi:10.1242/jeb.203.1.89. PMID 10600677.
  2. ^ Ohya Y, Umemoto N, Tanida I, Ohta A, Iida H, Anraku Y (July 1991). "Calcium-sensitive cls mutants of Saccharomyces cerevisiae showing a Pet- phenotype are ascribable to defects of vacuolar membrane H(+)-ATPase activity". The Journal of Biological Chemistry. 266 (21): 13971–7. doi:10.1016/S0021-9258(18)92798-5. PMID 1830311.
  3. ^ Wienisch M, Klingauf J (August 2006). "Vesicular proteins exocytosed and subsequently retrieved by compensatory endocytosis are nonidentical". Nature Neuroscience. 9 (8): 1019–27. doi:10.1038/nn1739. hdl:11858/00-001M-0000-0012-E436-F. PMID 16845386. S2CID 12808314.
  4. ^ Izumi H, Torigoe T, Ishiguchi H, Uramoto H, Yoshida Y, Tanabe M, Ise T, Murakami T, Yoshida T, Nomoto M, Kohno K (December 2003). "Cellular pH regulators: potentially promising molecular targets for cancer chemotherapy". Cancer Treatment Reviews. 29 (6): 541–9. doi:10.1016/S0305-7372(03)00106-3. PMID 14585264.
  5. ^ a b c Emma B, Forest O, Barry B (June 1997). "Mutations of pma-1, the Gene Encoding the Plasma Membrane H+ATPase of Neurospora crassa, Suppress Inhibition of Growth by Concanamycin A, a Specific Inhibitor of Vacuolar ATPases". The Journal of Biological Chemistry. 272 (23): 14776–14786. doi:10.1074/jbc.272.23.14776. PMID 9169444. S2CID 29865381.
  6. ^ Bowman, E. J., & Bowman, B. J. (2000). Cellular role of the V-ATPase in Neurospora crassa: analysis of mutants resistant to concanamycin or lacking the catalytic subunit A. The Journal of experimental biology, 203(Pt 1), 97–106.
  7. ^ Kitagawa N, Mazon H, Heck AJ, Wilkens S (February 2008). "Stoichiometry of the peripheral stalk subunits E and G of yeast V1-ATPase determined by mass spectrometry". The Journal of Biological Chemistry. 283 (6): 3329–37. doi:10.1074/jbc.M707924200. PMID 18055462. S2CID 27627066.
  8. ^ Muench SP, Huss M, Song CF, Phillips C, Wieczorek H, Trinick J, Harrison MA (March 2009). "Cryo-electron microscopy of the vacuolar ATPase motor reveals its mechanical and regulatory complexity". Journal of Molecular Biology. 386 (4): 989–99. doi:10.1016/j.jmb.2009.01.014. PMID 19244615.
  9. ^ Diepholz M, Börsch M, Böttcher B (October 2008). "Structural organization of the V-ATPase and its implications for regulatory assembly and disassembly". Biochemical Society Transactions. 36 (Pt 5): 1027–31. doi:10.1042/BST0361027. PMID 18793183. S2CID 23852611.
  10. ^ Zhang Z, Zheng Y, Mazon H, Milgrom E, Kitagawa N, Kish-Trier E, Heck AJ, Kane PM, Wilkens S (December 2008). "Structure of the yeast vacuolar ATPase". The Journal of Biological Chemistry. 283 (51): 35983–95. doi:10.1074/jbc.M805345200. PMC 2602884. PMID 18955482.
  11. ^ Johnson RG, Beers MF, Scarpa A (September 1982). "H+ ATPase of chromaffin granules. Kinetics, regulation, and stoichiometry". The Journal of Biological Chemistry. 257 (18): 10701–7. doi:10.1016/S0021-9258(18)33879-1. PMID 6213624.
  12. ^ Hirata R, Umemoto N, Ho MN, Ohya Y, Stevens TH, Anraku Y (January 1993). "VMA12 is essential for assembly of the vacuolar H(+)-ATPase subunits onto the vacuolar membrane in Saccharomyces cerevisiae". The Journal of Biological Chemistry. 268 (2): 961–7. doi:10.1016/S0021-9258(18)54027-8. PMID 8419376.
  13. ^ a b Ho MN, Hirata R, Umemoto N, Ohya Y, Takatsuki A, Stevens TH, Anraku Y (August 1993). "VMA13 encodes a 54-kDa vacuolar H(+)-ATPase subunit required for activity but not assembly of the enzyme complex in Saccharomyces cerevisiae". The Journal of Biological Chemistry. 268 (24): 18286–92. doi:10.1016/S0021-9258(17)46842-6. PMID 8349704.
  14. ^ a b Hill KJ, Stevens TH (September 1994). "Vma21p is a yeast membrane protein retained in the endoplasmic reticulum by a di-lysine motif and is required for the assembly of the vacuolar H(+)-ATPase complex". Molecular Biology of the Cell. 5 (9): 1039–50. doi:10.1091/mbc.5.9.1039. PMC 301125. PMID 7841520.
  15. ^ Jackson DD, Stevens TH (October 1997). "VMA12 encodes a yeast endoplasmic reticulum protein required for vacuolar H+-ATPase assembly". The Journal of Biological Chemistry. 272 (41): 25928–34. doi:10.1074/jbc.272.41.25928. PMID 9325326. S2CID 38400074.
  16. ^ Hill KJ, Stevens TH (September 1995). "Vma22p is a novel endoplasmic reticulum-associated protein required for assembly of the yeast vacuolar H(+)-ATPase complex". The Journal of Biological Chemistry. 270 (38): 22329–36. doi:10.1074/jbc.270.38.22329. PMID 7673216. S2CID 34639779.
  17. ^ Graham LA, Hill KJ, Stevens TH (July 1998). "Assembly of the yeast vacuolar H+-ATPase occurs in the endoplasmic reticulum and requires a Vma12p/Vma22p assembly complex". The Journal of Cell Biology. 142 (1): 39–49. doi:10.1083/jcb.142.1.39. PMC 2133036. PMID 9660861.
  18. ^ Graham LA, Flannery AR, Stevens TH (August 2003). "Structure and assembly of the yeast V-ATPase". Journal of Bioenergetics and Biomembranes. 35 (4): 301–12. doi:10.1023/A:1025772730586. PMID 14635776. S2CID 37806912.
  19. ^ Malkus P, Graham LA, Stevens TH, Schekman R (November 2004). "Role of Vma21p in assembly and transport of the yeast vacuolar ATPase". Molecular Biology of the Cell. 15 (11): 5075–91. doi:10.1091/mbc.E04-06-0514. PMC 524777. PMID 15356264.
  20. ^ a b c Stewart AG, Laming EM, Sobti M, Stock D (April 2014). "Rotary ATPases--dynamic molecular machines". Current Opinion in Structural Biology. 25: 40–8. doi:10.1016/j.sbi.2013.11.013. PMID 24878343.
  21. ^ Inoue T, Forgac M (July 2005). "Cysteine-mediated cross-linking indicates that subunit C of the V-ATPase is in close proximity to subunits E and G of the V1 domain and subunit a of the V0 domain". The Journal of Biological Chemistry. 280 (30): 27896–903. doi:10.1074/jbc.M504890200. PMID 15951435. S2CID 23648833.
  22. ^ Drory O, Frolow F, Nelson N (December 2004). "Crystal structure of yeast V-ATPase subunit C reveals its stator function". EMBO Reports. 5 (12): 1148–52. doi:10.1038/sj.embor.7400294. PMC 1299189. PMID 15540116.
  23. ^ Imada K, Minamino T, Uchida Y, Kinoshita M, Namba K (March 2016). "Insight into the flagella type III export revealed by the complex structure of the type III ATPase and its regulator". Proceedings of the National Academy of Sciences of the United States of America. 113 (13): 3633–8. Bibcode:2016PNAS..113.3633I. doi:10.1073/pnas.1524025113. PMC 4822572. PMID 26984495.
  24. ^ Jefferies KC, Forgac M (February 2008). "Subunit H of the vacuolar (H+) ATPase inhibits ATP hydrolysis by the free V1 domain by interaction with the rotary subunit F". The Journal of Biological Chemistry. 283 (8): 4512–9. doi:10.1074/jbc.M707144200. PMC 2408380. PMID 18156183.
  25. ^ a b Toei M, Saum R, Forgac M (June 2010). "Regulation and isoform function of the V-ATPases". Biochemistry. 49 (23): 4715–23. doi:10.1021/bi100397s. PMC 2907102. PMID 20450191.
  26. ^ Forgac M (January 1999). "The vacuolar H+-ATPase of clathrin-coated vesicles is reversibly inhibited by S-nitrosoglutathione". The Journal of Biological Chemistry. 274 (3): 1301–5. doi:10.1074/jbc.274.3.1301. PMID 9880499. S2CID 21784089.
  27. ^ a b Whyteside G, Gibson L, Scott M, Finbow ME (June 2005). "Assembly of the yeast vacuolar H+-ATPase and ATP hydrolysis occurs in the absence of subunit c"". FEBS Letters. 579 (14): 2981–5. doi:10.1016/j.febslet.2005.04.049. PMID 15907326. S2CID 32086585.
  28. ^ Stevens TH, Forgac M (1997). "Structure, function and regulation of the vacuolar (H+)-ATPase". Annual Review of Cell and Developmental Biology. 13: 779–808. doi:10.1146/annurev.cellbio.13.1.779. PMID 9442887.
  29. ^ Parra KJ, Keenan KL, Kane PM (July 2000). "The H subunit (Vma13p) of the yeast V-ATPase inhibits the ATPase activity of cytosolic V1 complexes". The Journal of Biological Chemistry. 275 (28): 21761–7. doi:10.1074/jbc.M002305200. PMID 10781598. S2CID 46127337.
  30. ^ a b Kane PM (July 1995). "Disassembly and reassembly of the yeast vacuolar H(+)-ATPase in vivo". The Journal of Biological Chemistry. 270 (28): 17025–32. doi:10.1016/S0021-9258(17)46944-4. PMID 7622524.
  31. ^ Sumner JP, Dow JA, Earley FG, Klein U, Jäger D, Wieczorek H (March 1995). "Regulation of plasma membrane V-ATPase activity by dissociation of peripheral subunits". The Journal of Biological Chemistry. 270 (10): 5649–53. doi:10.1074/jbc.270.10.5649. PMID 7890686. S2CID 38963775.
  32. ^ Kane PM, Tarsio M, Liu J (June 1999). "Early steps in assembly of the yeast vacuolar H+-ATPase". The Journal of Biological Chemistry. 274 (24): 17275–83. doi:10.1074/jbc.274.24.17275. PMID 10358087. S2CID 42610386.
  33. ^ Pearson H (9 January 2012). "Resurrecting extinct proteins shows how a machine evolves". Nature.com News Blog.
  34. ^ Finnigan GC, Hanson-Smith V, Stevens TH, Thornton JW (January 2012). "Evolution of increased complexity in a molecular machine". Nature. 481 (7381): 360–4. Bibcode:2012Natur.481..360F. doi:10.1038/nature10724. PMC 3979732. PMID 22230956.
  35. ^ Snapshot view of the V-ATPase molecular machine: animals vs. fungi Archived 2012-04-28 at the Wayback Machine, University of Oregon (Accessed 2012-01-11)
  36. ^ Hilario E, Gogarten JP (1993). "Horizontal transfer of ATPase genes--the tree of life becomes a net of life" (PDF). Bio Systems. 31 (2–3): 111–9. doi:10.1016/0303-2647(93)90038-E. PMID 8155843.
  37. ^ Bowman EJ, O'Neill FJ, Bowman BJ (June 1997). "Mutations of pma-1, the gene encoding the plasma membrane H+-ATPase of Neurospora crassa, suppress inhibition of growth by concanamycin A, a specific inhibitor of vacuolar ATPases". The Journal of Biological Chemistry. 272 (23): 14776–86. doi:10.1074/jbc.272.23.14776. PMID 9169444. S2CID 29865381.
  38. ^ Kane PM, Smardon AM (August 2003). "Assembly and regulation of the yeast vacuolar H+-ATPase". Journal of Bioenergetics and Biomembranes. 35 (4): 313–21. doi:10.1023/A:1025724814656. PMID 14635777. S2CID 7535580.
  39. ^ Holliday LS, Lu M, Lee BS, Nelson RD, Solivan S, Zhang L, Gluck SL (October 2000). "The amino-terminal domain of the B subunit of vacuolar H+-ATPase contains a filamentous actin binding site". The Journal of Biological Chemistry. 275 (41): 32331–7. doi:10.1074/jbc.M004795200. PMID 10915794. S2CID 2601649.
  40. ^ a b c Michigami T, Kageyama T, Satomura K, Shima M, Yamaoka K, Nakayama M, Ozono K (February 2002). "Novel mutations in the a3 subunit of vacuolar H(+)-adenosine triphosphatase in a Japanese patient with infantile malignant osteopetrosis". Bone. 30 (2): 436–9. doi:10.1016/S8756-3282(01)00684-6. PMID 11856654.
  41. ^ a b c Frattini A, Orchard PJ, Sobacchi C, Giliani S, Abinun M, Mattsson JP, Keeling DJ, Andersson AK, Wallbrandt P, Zecca L, Notarangelo LD, Vezzoni P, Villa A (July 2000). "Defects in TCIRG1 subunit of the vacuolar proton pump are responsible for a subset of human autosomal recessive osteopetrosis". Nature Genetics. 25 (3): 343–6. doi:10.1038/77131. PMID 10888887. S2CID 21316081.
  42. ^ a b c Sobacchi C, Frattini A, Orchard P, Porras O, Tezcan I, Andolina M, et al. (August 2001). "The mutational spectrum of human malignant autosomal recessive osteopetrosis". Human Molecular Genetics. 10 (17): 1767–73. doi:10.1093/hmg/10.17.1767. PMID 11532986.
  43. ^ Fasth A, Porras O (1999). "Human malignant osteopetrosis: pathophysiology, management and the role of bone marrow transplantation". Pediatric Transplantation. 3 (Suppl 1): 102–7. doi:10.1034/j.1399-3046.1999.00063.x. PMID 10587979. S2CID 31745272.
  44. ^ Sly WS, Hewett-Emmett D, Whyte MP, Yu YS, Tashian RE (May 1983). "Carbonic anhydrase II deficiency identified as the primary defect in the autosomal recessive syndrome of osteopetrosis with renal tubular acidosis and cerebral calcification". Proceedings of the National Academy of Sciences of the United States of America. 80 (9): 2752–6. Bibcode:1983PNAS...80.2752S. doi:10.1073/pnas.80.9.2752. PMC 393906. PMID 6405388.
  45. ^ a b Kornak U, Schulz A, Friedrich W, Uhlhaas S, Kremens B, Voit T, Hasan C, Bode U, Jentsch TJ, Kubisch C (August 2000). "Mutations in the a3 subunit of the vacuolar H(+)-ATPase cause infantile malignant osteopetrosis". Human Molecular Genetics. 9 (13): 2059–63. doi:10.1093/hmg/9.13.2059. PMID 10942435.
  46. ^ Frattini A, Pangrazio A, Susani L, Sobacchi C, Mirolo M, Abinun M, Andolina M, Flanagan A, Horwitz EM, Mihci E, Notarangelo LD, Ramenghi U, Teti A, Van Hove J, Vujic D, Young T, Albertini A, Orchard PJ, Vezzoni P, Villa A (October 2003). "Chloride channel ClCN7 mutations are responsible for severe recessive, dominant, and intermediate osteopetrosis". Journal of Bone and Mineral Research. 18 (10): 1740–7. doi:10.1359/jbmr.2003.18.10.1740. PMID 14584882. S2CID 20966489.
  47. ^ Susani L, Pangrazio A, Sobacchi C, Taranta A, Mortier G, Savarirayan R, Villa A, Orchard P, Vezzoni P, Albertini A, Frattini A, Pagani F (September 2004). "TCIRG1-dependent recessive osteopetrosis: mutation analysis, functional identification of the splicing defects, and in vitro rescue by U1 snRNA". Human Mutation. 24 (3): 225–35. doi:10.1002/humu.20076. PMID 15300850. S2CID 31788054.
  48. ^ Alper SL (2002). "Genetic diseases of acid-base transporters". Annual Review of Physiology. 64: 899–923. doi:10.1146/annurev.physiol.64.092801.141759. PMID 11826292.
  49. ^ a b c Karet FE, Finberg KE, Nelson RD, Nayir A, Mocan H, Sanjad SA, et al. (January 1999). "Mutations in the gene encoding B1 subunit of H+-ATPase cause renal tubular acidosis with sensorineural deafness". Nature Genetics. 21 (1): 84–90. doi:10.1038/5022. PMID 9916796. S2CID 34262548.
  50. ^ Karet FE, Gainza FJ, Györy AZ, Unwin RJ, Wrong O, Tanner MJ, et al. (May 1998). "Mutations in the chloride-bicarbonate exchanger gene AE1 cause autosomal dominant but not autosomal recessive distal renal tubular acidosis". Proceedings of the National Academy of Sciences of the United States of America. 95 (11): 6337–42. Bibcode:1998PNAS...95.6337K. doi:10.1073/pnas.95.11.6337. PMC 27686. PMID 9600966.
  51. ^ a b Stehberger PA, Schulz N, Finberg KE, Karet FE, Giebisch G, Lifton RP, Geibel JP, Wagner CA (December 2003). "Localization and regulation of the ATP6V0A4 (a4) vacuolar H+-ATPase subunit defective in an inherited form of distal renal tubular acidosis". Journal of the American Society of Nephrology. 14 (12): 3027–38. doi:10.1097/01.ASN.0000099375.74789.AB. PMID 14638902.
  52. ^ a b c Stover EH, Borthwick KJ, Bavalia C, Eady N, Fritz DM, Rungroj N, et al. (November 2002). "Novel ATP6V1B1 and ATP6V0A4 mutations in autosomal recessive distal renal tubular acidosis with new evidence for hearing loss". Journal of Medical Genetics. 39 (11): 796–803. doi:10.1136/jmg.39.11.796. PMC 1735017. PMID 12414817.
  53. ^ a b Ramachandran N, Munteanu I, Wang P, Ruggieri A, Rilstone JJ, Israelian N, et al. (March 2013). "VMA21 deficiency prevents vacuolar ATPase assembly and causes autophagic vacuolar myopathy". Acta Neuropathologica. 125 (3): 439–57. doi:10.1007/s00401-012-1073-6. PMID 23315026. S2CID 20528180.
[edit]
Retrieved from "https://en.wikipedia.org/w/index.php?title=V-ATPase&oldid=1230508673"