This paper presents the first polynomial time algorithm for finding common RNA substructures that include pseudoknots and similar structures.
This paper presents the first polynomial time algorithm for finding common RNA substructures that include pseudoknots and similar structures.
Abstract. This paper presents the first polynomial time algorithm for finding common RNA substructures that include pseudoknots and sim- ilar structures.
Finding Common RNA Pseudoknot Structures in Polynomial Time. Patricia Evans ... Under these restrictions, RNA bond structures can be compared in polynomial time ...
Oct 2, 2021 · By employing the LinearPartition model, IPknot is able to predict secondary structures while considering pseudoknots for long sequences, ...
Abstract—This paper presents the dynamic parallelization of a sequential algorithm for finding common RNA secondary structures that initially does not ...
A&U structures are built from so-called simple pseudoknots. A simple pseudoknot consists of two groups of base pairs, the base pairs of each group forming a ...
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What is the structure of the RNA pseudoknot?
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Limited Context • The polynomial time DP algorithm for nested bond structures works due to the context-free nature of segments in the nested structures.
For DNA encoding applications, pseudoknot structures are undesirable. We give polynomial-time algorithms to decide whether a regular language L contains a ...
In this paper we study the distribution of stacks/loops in k-non-crossing, τ -canonical RNA pseudoknot structures ( 〈 k , τ 〉 -structures).
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