Characterisation and Cross Frequency Coupling (CFC) Analysis in Eeg Signals
Characterisation and Cross Frequency Coupling (CFC) Analysis in Eeg Signals
Characterisation and Cross Frequency Coupling (CFC) Analysis in Eeg Signals
NITHIN A
M160124EE
Introduction
Objective
Methodology
Brain regions and functions
Mean vector length analysis
Kullback-leibler analysis
Mutual information analysis
Conclusion
References
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INTRODUCTION
To study the neuronal oscillations taking place in the brain using cross
frequency coupling.
Frequency to be analyzed in the same region of the brain under
different frequency bands.
Measures for the calculation of CFC
Mean vector length (MVL)
Kullback-Leibler modulation index (KL-MI) method
To study the information transmission in the brain using mutual
information.
Cross mutual information (CMI)
Auto mutual information (AMI)
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LITERATURE REVIEW
Sl
Author and publication Title Remarks
No.
1. It presents a new method for assessing
Tort, A.B., Komorowski, R., Measuring phase-amplitude
phase amplitude cross frequency coupling
Eichenbaum, H. and Kopell, N. coupling between neuronal
1 2. It also reviews seven other CFC measures.
Journal of neurophysiology, oscillations of different
3. This method is applied on the hippocampal
104(2), pp.1195-1210. (2010) frequencies.
recording of rats.
1.Mutual information provides a measure of
both the linear and nonlinear statistical
dependencies between two time series.
Jeong, J., Gore, J.C. and 2.Cross-mutual information (CMI) is used to
Mutual information analysis
Peterson, B.S., 2001. quantify the information transmitted from
2 of the EEG in patients with
Clinical neurophysiology, one time series to another.
Alzheimer’s disease.
112(5), pp.827-835. 3.Auto mutual information (AMI) in a time series
estimates how much on average the value of the
time series can be predicted from values of the
time series at preceding points.
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EEG data acquisition
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CROSS FREQUENCY COUPLING
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MEASURING CROSS FREQUENCY COUPLING
Several algorithms available.
Each proper for a particular case.
No single method has been elected as a preferred standard so far.
Sl
Algorithm Limitation
No
The envelope to Sensitive to coupling phase
1 ESC
signal correlation Potentially not capable of calculating coupling intensity
Phase-Locking
2 PLVMI Potentially not capable of calculating coupling intensity
based measure
3 MVL Mean vector length Need long data length
The general linear
4 GLM Potentially not capable of calculating coupling intensity
model measure
Amplitude power
5 APSD Potentially not capable of calculating coupling intensity
spectral density
6 CV Coherence value Potentially not capable of calculating coupling intensity
Kullback-leibler
7 KL-MI based modulation Need long data length
index
Event related phase Potentially not capable of calculating coupling intensity
8 ERPAC
amplitude coupling Only works on event-related datasets
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METHODOLOGY
Unfiltered raw signal.
The low frequency phase is extracted from the raw signal in order to
create the real valued band pass filtered signal xδ (t). (.5-4Hz)
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Raw signal was filtered from 24-100Hz in order to create the
real-valued band pass filtered gamma signal xγ (t)
Hilbert transform
Applications of the Hilbert transform in the analysis of biomedical
signals are connected with the concepts of the analytic signal,
envelope, instantaneous phase and instantaneous frequency.
R ∞ x (τ )
The Hilbert transform of a signal x̂ (t) = H[x (t)] = 1/π −∞
t −τ
z(t) = x (t) + i x̂ (t)
zi (t)
Where Instantaneous phase angle is φ(t) = <z(t) = arctan
zp
r (t)
The amplitude envelope can be obtained as follows, A(t) = zr2 + zi2
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Composite analytic signal
The Composite analytic signal can be formed by combining the
gamma amplitude and phase of the delta signal.
The composite analytic signal is shown below.
Z (t) = AG (t)exp iφδ (t) (1)
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If there is no PAC, the plot of AfA e iφfp time series in complex plane
will be a uniform circular density distribution symmetric around zero.
If there is modulation of amplitude for some phases, the coupling will
be more showing unsymmetrical distribution around zero, which in
turn will lead to a bump in its polar plot.
Extend of coupling can be done by taking the mean over all points in
the complex plane.
Coupling is high ⇒ Higher mean vector length and vice-versa.
Mean over all points will be almost zero for symmetric distribution,
showing lesser coupling strength.
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Kullback-Leibler method
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MUTUAL INFORMATION
It will provide linear or non linear dependency between two time series.
Two types :
Cross mutual information (CMI)
Auto mutual information (AMI)
Cross mutual information
CMI is used to quantify the information transmitted from one time
series to another.
X
H(X ) = − PX (xi )log2 PX (xi ) (4)
xi
P
H(X |Y ) = − PXY (xi , yj )log2 [PXY (xi , yj )/PY (yj )] (5)
xi ,yj
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While the a priori uncertainty on X is H(X), the a posteriori uncertainty on
X, given a measurement of y, is H(X—Y). Hence the amount that a
measurement of y reduces the uncertainty of x is
X PXXτ (x (t), x (t + τ ))
IXXτ = PXXτ (x (t), x (t + τ ))log2 (12)
PX (x (t))PXτ X (t + τ )
x (t),x (t+τ )
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BRAIN REGIONS AND FUNCTIONS
The human brain can be broadly classified to three regions.
Cerebrum
Associated with the main functions including analyzing,processing and
overall coordination.
Mainly divided into four parts: frontal lobe,parietal lobe,temporal lobe
and occipital lobe.
Cerebellum
Known as the compact brain which is almost similar to the cerebrum.
Main function of the cerebellum is motor control,balance and
coordination.
Any injury to cerebellum may cause lack of balance, shaking and slower
movements.
Brain stem
Stem-like part of the base of the brain
Attached to the spinal cord.
Controls the flow of messages between the brain and rest of the body
Controls basic body functions such as breathing, heart rate etc.
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Frontal lobe
Largest part of the mammalian brain.
Main function of the frontal lobe is to control the voluntary movements
like walking.
Broca’s area is a main region in the frontal lobe which helps to convert
our thoughts to speech and language.
Responsible for controlling our behavior, personality and emotions.
If the frontal lobe is damaged it will also effect the problem solving
skill, planning judgement, concentration and intelligence.
Parietal lobe
One of the main regions of cerebral cortex which is located behind the
frontal lobe and above the occipital lobe.
Several areas of the parietal lobe is important in language processing.
Sensory informations like temperature , taste and touch are processed
in this region.
Spatial and temporal perceptions are also carried out by parietal lobe.
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Temporal lobe
Situated beneath the lateral sulcus on each cerebral hemisphere of the
human brain.
Limbic system structures including olfactory cortex, amygdala, and
hippocampus are situated within this region.
Any damage to temporal lobe may lead to problems with memory,
understanding language and maintaining emotional control.
Occipital lobe
Smallest lobe among these five lobes.
Located in the back side of the cerebral cortex.
Main function of this lobe includes optical-spatial action , image and
color recognition.
If this portion of the brain gets damaged, processing of optical signals
and identification of objects and geometrical shapes gets hindered.
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Limbic system : located in the cerebrum itself, which deals with the
emotions, memory and stimulation. It has mainly four regions:
thalamus , hypothalamus , hippocampus and amygdala.
Thalamus
Situated in the fore brain and is having numerous functions.
It is having the duty of processing sensory information as well as
relaying it.
Injury to thalamus might cause trauma.
Hypothalamus
Very small in size and situated at the base of the brain.
Main function is to control hormone level, thirst, emotions, sleep,
homeostasis, temperature control etc.
If the hypothalamus is not working properly, then it is very hard to find
out because it has wide range of functions.
The main causes of dysfunction of hypothalamus are head injuries,
radiation, tumors and genetic problems.
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Hippocampus
Situated in the medial temporal lobe of the human brain.
Main function is memory
Associated with both short term and long term memory, spatial
navigation, learning and emotion.
Alzheimer disease will begin from hippocampal area.
Amygdala
Positioned in the temporal lobe of human brain.
The main functions of the amygdala are hormonal secretion , memory
emotional response and arousal.
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MEAN VECTOR LENGTH ANALYSIS
0.03
0.02
0.015
0.01
0.005
0
Fp1Fp2F3 F4 C3 C4 P3 P4 O1 O2 T1 T2 F7 F8 T3 T4 T5 T6 Fz Cz Pz A1 A2
Electrode Location
0.03
Coupling Strength
0.025
0.02
0.015
0.01
0.005
0
Fp1Fp2F3 F4 C3 C4 P3 P4 O1 O2 T1 T2 F7 F8 T3 T4 T5 T6 Fz Cz Pz A1 A2
Electrode Location
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Mental arithmetic eyes closed (MAEC) task
0.04
Patient
0.035 Control
0.03
Coupling Strength
0.025
0.02
0.015
0.01
0.005
0
Fp1Fp2F3 F4 C3 C4 P3 P4 O1 O2 T1 T2 F7 F8 T3 T4 T5 T6 Fz Cz Pz A1 A2
Electrode Location
0.03
Coupling Strength
0.025
0.02
0.015
0.01
0.005
0
Fp1Fp2F3 F4 C3 C4 P3 P4 O1 O2 T1 T2 F7 F8 T3 T4 T5 T6 Fz Cz Pz A1 A2
Electrode Location
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KULLBACK-LEIBLER ANALYSIS
0.04
0.03
0.025
0.02
0.015
0.01
0.005
0
Fp1Fp2F3 F4 C3 C4 P3 P4 O1 O2 T1 T2 F7 F8 T3 T4 T5 T6 Fz Cz Pz A1 A2
Electrode Location
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Eyes open condition
0.05
Patient
0.045 Control
0.04
0.035
Coupling Strength
0.03
0.025
0.02
0.015
0.01
0.005
0
Fp1Fp2F3 F4 C3 C4 P3 P4 O1 O2 T1 T2 F7 F8 T3 T4 T5 T6 Fz Cz Pz A1 A2
Electrode Location
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Mental arithmetic eyes closed (MAEC) task
0.05
Patient
0.045 Control
0.04
0.035
Coupling Strength
0.03
0.025
0.02
0.015
0.01
0.005
0
Fp1Fp2F3 F4 C3 C4 P3 P4 O1 O2 T1 T2 F7 F8 T3 T4 T5 T6 Fz Cz Pz A1 A2
Electrode Location
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Mental arithmetic eyes open (MAEO) task
0.05
Patient
0.045 Control
0.04
0.035
Coupling Strength
0.03
0.025
0.02
0.015
0.01
0.005
0
Fp1Fp2F3 F4 C3 C4 P3 P4 O1 O2 T1 T2 F7 F8 T3 T4 T5 T6 Fz Cz Pz A1 A2
Electrode Location
1 Significant variation is seen in right and left half of the frontal lobe
(F3,F7,F4,F8) which is having important role in
concentration,intelligence and problem solving skill.
2 Temporal region (T1,T5,T2,T4) is also highly affected that is, the
temporal lobes situated in the right and left part of the brain is
affected.
3 The left part of the parietal lobe (P3) is also slightly affected and left
part of the occipital region is also affected as these regions are
associated with vision.
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MVL vs KL-MI
KL-MI Method
EC EO MAEC MAEO
P C P C P C P C
Max. PAC 0.039 0.043 0.034 0.037 0.026 0.029 0.028 0.039
Flow 2.5 2.5 2.5 2.5 0.5 0.5 1.93 1.93
Fhigh 40 40 32 32 58 58 47 47
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1 The result obtained in our analysis is matching with the clinical
studies.
2 PAC strength is lesser in frontal and temporal lobes.
3 The neurons in frontal and temporal lobes are damaged, that is
neuronal death occurs.
4 Learning,communication and computation are affected.
5 The range of variation of PAC strength is larger in KL-MI method
than MVL method.
6 KL-MI method is more sensitive than MVL.
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Resting condition vs cognitive task
Mean vector length
Ele.Location EC MAEC EC P MAEC P EO MAEO EO P MAEO P
Fp1 0.0191 0.0194 0.0197 0.0202 0.0203 0.0208 0.0202 0.0231
Fp2 0.0216 0.0225 0.0223 0.0223 0.0222 0.0238 0.0224 0.024
F3 0.0230 0.0232 0.0206 0.0209 0.0234 0.0244 0.0211 0.0232
F4 0.0226 0.0246 0.0240 0.024 0.023 0.0262 0.024 0.023
C3 0.0190 0.0195 0.0187 0.0187 0.0193 0.0195 0.0187 0.0193
C4 0.0236 0.0232 0.0198 0.0204 0.023 0.023 0.0187 0.0206
P3 0.0207 0.021 0.0194 0.0194 0.0214 0.0211 0.0188 0.0192
P4 0.0215 0.0222 0.0225 0.0232 0.021 0.0216 0.0215 0.0220
O1 0.0191 0.0187 0.0167 0.0181 0.018 0.0194 0.0164 0.0168
O2 0.0215 0.0216 0.0216 0.0223 0.022 0.0215 0.0217 0.0213
T1 0.0219 0.0224 0.0214 0.019 0.0208 0.0216 0.0215 0.0198
T2 0.0224 0.0220 0.0189 0.0193 0.022 0.023 0.0192 0.0208
F7 0.0197 0.0207 0.0191 0.0193 0.0204 0.0224 0.019 0.019
F8 0.0213 0.0233 0.0210 0.0221 0.0213 0.0243 0.0206 0.0211
T3 0.018 0.0186 0.0177 0.0181 0.0187 0.0184 0.0178 0.0177
T4 0.0206 0.0224 0.0202 0.0205 0.0206 0.024 0.02 0.0203
T5 0.0357 0.0261 0.026 0.0241 0.025 0.027 0.0246 0.0243
T6 0.0224 0.023 0.0205 0.0211 0.0229 0.023 0.0208 0.0211
Fz 0.0211 0.0224 0.020 0.0212 0.0214 0.0225 0.0201 0.0218
Cz 0.0230 0.0234 0.0224 0.0218 0.023 0.0237 0.0223 0.0220
Pz 0.0183 0.0182 0.0193 0.0192 0.0186 0.0192 0.0191 0.0188
A1 0.0238 0.026 0.0198 0.0187 0.0215 0.0234 0.0186 0.0192
A2 0.0221 0.0220 0.018 0.0193 0.021 0.0230 0.0184 33 / 55
0.0193
1 Controls are showing higher PAC strength for eyes closed cognitive
task as compared to eyes closed resting condition except regions
C4,T2,T5 and A1.
2 Patients are showing Lesser PAC strength for eyes closed cognitive
task compared with eyes closed resting task in locations T1,T5,Cz,Pz
and A1.
3 Controls are showing higher PAC strength for eyes open cognitive task
as compared to eyes open resting condition except regions P3 and T3.
4 Patients are showing Lesser PAC strength value for eyes open
cognitive task compared with eyes open resting condition in locations
F4,T1,T5,Cz, and Pz.
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Table: Resting condition Vs Cognitive task using KL-MI
KL-MI
Ele.location EC MAEC EC P MAEC P EO MAEO EO P MAEO P
Fp1 0.0218 0.0269 0.0194 0.0233 0.0212 0.0243 0.0205 0.0201
Fp2 0.0232 0.0258 0.0244 0.0231 0.03 0.0196 0.0153 0.0376
F3 0.024 0.0376 0.018 0.0211 0.0192 0.0227 0.0177 0.016
F4 0.0269 0.0255 0.0212 0.0231 0.0255 0.0192 0.0174 0.0255
C3 0.0233 0.0244 0.0197 0.0227 0.0209 0.02 0.0181 0.0195
C4 0.0272 0.0277 0.023 0.0269 0.028 0.0277 0.0194 0.0268
P3 0.0189 0.023 0.0201 0.0245 0.0258 0.0217 0.0155 0.0236
P4 0.0196 0.0239 0.023 0.0211 0.0214 0.0229 0.0196 0.021
O1 0.0246 0.0238 0.0182 0.0218 0.0217 0.0243 0.017 0.0226
O2 0.0205 0.026 0.0185 0.0205 0.0198 0.0226 0.0171 0.0198
T1 0.0205 0.0416 0.0194 0.0275 0.0211 0.0215 0.01575 0.0174
T2 0.0294 0.0436 0.0263 0.0391 0.0369 0.0374 0.0291 0.0354
F7 0.01593 0.0266 0.0144 0.0315 0.0169 0.0091 0.0076 0.0174
F8 0.022 0.0322 0.0181 0.0269 0.0171 0.0173 0.0141 0.0169
T3 0.0165 0.0307 0.0132 0.035 0.0087 0.0173 0.0095 0.0152
T4 0.0244 0.0239 0.0224 0.0219 0.0199 0.0223 0.0174 0.0212
T5 0.015 0.0147 0.0172 0.0125 0.01 0.0173 0.0231 0.0198
T6 0.018 0.0171 0.0176 0.0152 0.0153 0.0177 0.0147 0.0164
Fz 0.0162 0.0196 0.0159 0.0183 0.012 0.0137 0.0129 0.0128
Cz 0.0173 0.0218 0.0164 0.0201 0.0173 0.0181 0.0136 0.0186
Pz 0.0107 0.0158 0.0124 0.0158 0.0082 0.0103 0.008 0.0118
A1 0.0222 0.0318 0.019 0.0212 0.013 0.0243 0.0111 0.0215
A2 0.0139 0.0325 0.0134 0.0291 0.0093 0.0146 0.0087 35 / 55
0.0132
1 Controls are showing higher PAC strength for eyes closed cognitive
task as compared to eyes closed resting condition except regions
F3,F4,O1,T4 and T6.
2 Patients are showing Lesser PAC strength for eyes closed cognitive
task compared with eyes closed resting task in locations
Fp2,P4,T3,T4,T5 and T6.
3 Controls are showing higher PAC strength for eyes open cognitive task
as compared to eyes open resting condition except regions
Fp2,F4,P3,F7.
4 Patients are showing Lesser PAC strength for eyes open cognitive task
compared with eyes open resting condition in locations Fp1,F3,T5.
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CMI CMI
F F
p p
1 1
0
2
4
6
8
0
2
4
6
8
10
12
14
16
10
12
14
16
- -
F F7 F F7
p p
2 2
- -
F F8 F F8
p p
1 1
- -
F F3 F F3
p p
2 2
-F -F
P 4 P 4
3 3
-T -T
P 3 P 3
2 2
-P -P
P 4 P 4
3 3
Cross mutual information
-T -T
P 5 P 5
2 2
- -
P T6 P T6
3 3
-F -F
P p1 P p1
4 4
-F -F
p p
P 2 P 2
3 3
-F -F
P 7 P 7
4 4
-F -F
P 8 P 8
3 3
Patient
-F -F
Control
Electrode Location
Electrode Location
P 3 P 3
4 4
- -
MUTUAL INFORMATION ANALYSIS
T F4 T F4
5 5
-F -F
Patient
Control
T p1 T p1
6 6
Figure: 13.CMI Variation For EC
12
10
CMI
8
0
F 7
F F8
F F3
P 4
T p1
T 2
P p1
P 2
T 7
T 8
T 3
4
P 3
P 5
P T6
P 7
P 8
P 3
T F4
P 4
-F
-F
p
p
-F
-F
-F
-F
-T
-T
-F
-F
-F
-P
-F
-F
-F
-F
-
-
1
6
3
4
2
p
6
3
4
F
Electrode Location
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16
Patient
Control
14
12
10
CMI
8
0
F 7
F F8
F F3
P 4
T p1
T 2
P p1
P 2
T 7
T 8
T 3
4
P 3
P 5
P T6
P 7
P 8
P 3
T F4
P 4
-F
-F
p
p
-F
-F
-F
-F
-T
-T
-F
-F
-F
-P
-F
-F
-F
-F
-
-
1
6
3
4
2
p
6
3
4
F
Electrode Location
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Resting condition vs cognitive task
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1 For controls the value of cross mutual information is higher for eyes
closed cognitive tasks except P3-T3,P3-Fp1,P3-F3.
2 For patients the value of CMI is lesser for eyes closed cognitive tasks
compared with resting state except P2-P4,P2-T6,P3-F3.
3 For controls the value of cross mutual information is higher for eyes
open cognitive tasks except
Fp1-F3,Fp2-F4,P3-T3,P3-Fp1,P4-Fp2,P3-F3,P4-F4.
4 For patients the value of CMI is greater for eyes open cognitive tasks
compared with resting state except T5-Fp1,T5-F7,T6-F8.
5 It mainly affect on frontal and parietal lobes.
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Auto mutual information
0.085
Patient
Control
0.08
0.075
AMI
0.07
0.065
0.06
0.055
Fp1
Fp2F3 F4 C3C4 P3 P4O1O2 T1 T2 F7 F8 T3 T4 T5 T6 Fz Cz Pz A1 A2
Electrode Location
0.085
Patient
Control
0.08
0.075
AMI
0.07
0.065
0.06
0.055
Fp1
Fp2F3 F4 C3C4 P3 P4O1O2 T1 T2 F7 F8 T3 T4 T5 T6 Fz Cz Pz A1 A2
Electrode Location
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0.085
Patient
Control
0.08
0.075
AMI
0.07
0.065
0.06
0.055
Fp1
Fp2F3 F4 C3C4 P3 P4O1O2 T1 T2 F7 F8 T3 T4 T5 T6 Fz Cz Pz A1 A2
Electrode Location
0.085
Patient
Control
0.08
0.075
AMI
0.07
0.065
0.06
0.055
Fp1
Fp2F3 F4 C3C4 P3 P4O1O2 T1 T2 F7 F8 T3 T4 T5 T6 Fz Cz Pz A1 A2
Electrode Location
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1 AMI for all tasks are showing similar variation.
2 AMI is very less in the right part of the cerebral hemicortex compared
to the left part.
3 In EC,EO and MAEC the T1 region is showing some variation for
patients compared to controls.
4 In MAEO T1,T5 and F7 is showing a considerable difference in AMI.
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Resting condition vs cognitive task
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1 For controls AMI value is greater in cognitive condition compared
with resting state in almost all electrode locations.
2 AMI value is lesser for the patients in cognitive condition compared
with resting condition almost all electrode locations.
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CONCLUSION
CFC analysis has been conducted on twenty seven controls and fifteen
patients.
Protocol: Eyes closed,eyes open, mental arithmetic eyes closed and
mental arithmetic eyes open.
Frequency band: Delta and Gamma.
Electrode locations : 23
Measures used : MVL and KLMI
Both measures are giving almost same result.
In resting state some parts of frontal and temporal lobes are affected.
Under cognitive task condition complete temporal and frontal lobes
are affected
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Temporal lobe and frontal lobes are mostly affected. Because the
limbic system is located in this region.
Frontal lobe is associated with intelligence, planning and judging.
Kullback-Leibler method is more sensitive than Mean Vector Length.
Slight variation in coupling strength can be identified using
Kullback-Leibler method.
Cognitive task condition is showing significant variation in PAC
strength for patients.
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In cross mutual information analysis the communication is higher in
frontal-parietal and parietal-temporal regions.
EC,EO and MAEC tasks are showing almost same variation for CMI.
MAEO showing considerable variation of CMI for patients in
parietal-frontal.
CMI doesn’t affect frontoparietal-frontal and frontoparietal-temporal.
AMI is very less in the right part of the cerebral hemicortex.
Mild Alzheimer slightly affects temporal region for EC,EO,MAEC
tasks.
It slightly affects temporal and frontal region for MAEO task.
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Contribution
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Future scope
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