Production of Amylase Enzyme From Mangrove Fungal Isolates: African Journal of Biotechnology
Production of Amylase Enzyme From Mangrove Fungal Isolates: African Journal of Biotechnology
Production of Amylase Enzyme From Mangrove Fungal Isolates: African Journal of Biotechnology
Vol. 13(46), pp. 4338-4346, 12 November, 2014
DOI: 10.5897/AJB2013. 13424
Article Number: E08AE0648573
ISSN 1684-5315 African Journal of Biotechnology
Copyright © 2014
Author(s) retain the copyright of this article
http://www.academicjournals.org/AJB
The mangrove ecosystem serves as a bioresource for various industrially important microorganisms.
The use of fungi as a source of industrially relevant enzymes led to an increased interest in the
application of microbial enzymes in various industrial processes. Fungal colonies were isolated from
sediments of five different mangrove ecosystems of Odisha such as Bhitarakanika, Dhamra, Mahanadi,
Devi and Budhabalanga areas. Forty (40) fungal colonies were isolated and screened for amylase
activity out of which five strains were found to be more active. Among the isolates IFamy value was
maximum; that is, 5.2 for MSF-9. The amylase enzyme activity of MSF-9 was maximum at pH-5.0, 1%
NaCl, 1% substrate and Inositol as carbon source. The most potent fungi was identified through
morphological, microscopical and 18S rDNA sequence methods and identified as Penicillium citrinum-
JQ249898. This strain can be better utilized in large scale industries for enzyme production. Hence
further study is suggested on enzyme purification for various value-added product formation.
INTRODUCTION
Marine fungi is an important target group for various The enzyme has found numerous applications in
useful products of industrial importance such as commercial processes, including thinning and liquefaction
enzymes, sugars, antibiotics, alcohols, beverages, food of starch in alcohol, brewing and sugar industries. α-
products etc (Gupta et al., 2007). Study based on Amylases are hydrolytic enzymes that are widespread in
screening of fungal resources of mangroves for enzyme nature, being found in animals, microorganisms and
and their application has been done to accomplish plants (Octávio et al, 2000). In fungi, detailed studies on
environment friendly technological development (Maria et α-amylase purification have largely been limited to a few
al., 2005). Microbial enzymes have completely replaced species of fungi (AbouZeid, 1997; Khoo et al., 1994). The
the chemical hydrolysis of starch in starch process major advantage of using microorganisms for production
industry (Pandey et al., 2000). Amylases are among the of amylases is in economical bulk production capacity
most important enzymes in present-day biotechnology. and microbes are also easy to manipulate to obtain
Author(s) agree that this article remain permanently open access under the terms of the Creative Commons Attribution License 4.0
International License
Sahoo et al. 4339
enzymes of desired characteristics (Lonsane and (Wood and Bhat, 1988). The mixture was incubated for 10 min at
Ramesh, 1990). 30°C. The amount of reducing sugars released was determined by
dinitrosalicylate method (Miller, 1959) at 540 nm and is expressed
In the present study fungal strains were isolated from in units (one unit is the amount of enzyme releasing 1 mg of
five different mangrove ecosystems of Odisha, India. The glucose per mL per minute).
screening of the fungal isolates and enzyme assay of the
most active strain will be carried out. Finally the identi-
fication of potent fungal strain was done by morpho- Optimization of culture conditions
logical, microscopical and molecular study. The factors such as pH, salinity, carbon sources and different
substrate conc. concentrations and affecting production of amylase
MATERIALS AND METHODS were optimized by varying the parameters one at a time. The
experiments were conducted in 250 mL Erlenmeyer flask containing
Collection of sediment 150 mL of production medium for each parameter. After sterilization
by autoclaving, the flasks were cooled and inoculated with culture
Sediment samples were collected from five different mangrove and maintained under various culture conditions such as pH (3.0,
ecosystems such as Bhitarakanika, Dhamra, Mahanadi, Devi and 5.0, 7.0, 9.0 and 11.0), carbon source (D-glucose, lactose, dex-
Budhabalanga areas of Odisha, India. Sediment samples were trose, sucrose and inositol at 1%), salinity (0, 0.5, 1, 1.5, 2.0 and
collected with an air dried Beckman’s grab. The sediment collected 2.5% of NaCl) and substrate conc. (0, 0.5, 1, 1.5, 2.0 and 2.5% of
were aseptically transferred to labeled polythene bags and kept in starch). After 72 hr (expect for incubation period effect), 4 mL of the
an ice-chest box before transferring to the laboratory. The collected culture filtrate was assayed in triplicate to study the enzyme activity.
sediments were air dried for 7-10 days at room temperature in the
laboratory for further study.
Statistical analysis
Isolation of microorganism All experiments were carried out in triplicates, and repeated three
times. The samples collected from each replicate were tested for
Isolation of fungi has been was done through serial dilution amylase production and activity. Means and standard errors of
technique by taking one gram of air-dried sediment samples. The amylase activity and production were calculated, respectively. and
air-dried sediment sample was serially diluted with 50% sea water significant differences were calculated by determining standard
and plated on the Potato Dextrose Agar (PDA) media (Himedia) by error. The significance level of the individual parameters was done
spread plate method with the addition of 100 mg/L of ampicillin to through The data were statistically analyzed using one way analysis
avoid unwanted growth of bacteria and the culture plates were of variance (ANOVA) and Tukey’s multiple comparision test with the
incubated at 28°C for 36-48 h. The total viable count (TVC) was aid of the software, Graph pad 5.0; data with p-values lesser than
estimated from the mixed culture plate. The pure culture was 0.05 were considered significant.
obtained by repeated sub-culturing of the fungal isolates from the
mix culture plates. Then these pure cultures were maintained in
fresh PDA slants and preserved at 4°C for further study. Identification of potent strains
Morphological analysis
Amylase enzyme assay
The fungal isolates were identified by studying the morphological
Screening of isolates
and microscopical study. Morphological characterization was
Primary screening was done by using 1% of starch soluble in the carried done by studying the upper and lower surface of the culture
media plate. The results were recorded by using Gram’s iodide in plate.
the agar plate and the strains showing hydrolysis were selected and
index value (IFamy) has been determines for the isolates. Microscopical analysis
Production medium The microscopical analysis has been done by using Lactophenol
cotton blue (LPCB) staining method and were observed under
The production medium used for growth of the fungal isolate was compound microscope. The fungal spores were also observed
soluble starch 50 g, yeast extract 0.5 g, KH2PO4 10 g, (NH4)2SO4 under the SEM to observe the spore surface and structure.
10.5 g, MgSO4 0.3 g, CaCl2 0.5 g, FeSO4 0.013 g, MnSO4 0.004 g,
ZnSO4 0.004 g, CoCl 0.0067 g, 50% seawater. The pH was
adjusted to 6.5 and the media were sterilized in an autoclave for 15 Molecular taxonomy of the potent isolates
min at 121°C. The media were inoculated with a loop-full of fungal
spore suspension and incubated at 30°C in an orbital shaker set at Phylogenetic (18S rDNA) analysis of the strain the potent the most
100 rpm for 72 hrs. The media were centrifuged at 5,000 g for 15 amylase-producing strain possessing maximum IFAMY value was
min to obtain crude enzyme solution. carried out using following procedures
Amylase assay has been was carried out by taking the reaction Genomic DNA was isolated by using approximately 50mg of
mixture (4 mL) which consisted of 1 mL of centrifuged enzyme mycelium (wet weight) from a fresh culture plate as described by
solution and 2 mL of soluble starch in phosphate buffer, pH 6.5 Hapwood et al. (1985).
4340 Afr. J. Biotechnol.
6% 5% 1%
14%
74%
PCR amplification of the 18S rDNA mangrove sediments of Orissa (Figure 1).
Genomic DNA from the fungal cultures was used to perform PCR
reaction. The 500bp of rDNA fragment was amplified using high
fidelity PCR polymerase. 10 µL of the amplifications were analyzed Amylase screening
on 1% agarose gel.
Maximum index value IFamy was observed in case of
MSF-9 that is, 5.2 whereas in MSF-3, MSF-7, MSF-13
18S rDNA sequencing and MSF-28 it was 3.09, 2.68, 3.63 and 4.75,
The purified fragments were directly sequenced bidirectionally. The
respectively (Figure 2).
data was analyzed using applied biosystem DNA editing and
assembly software and sequence comparisons were obtained using
the micro Seq Software. Amylase assay
Effect of pH
Sample identification
A distance matrix was generated using the Jukes-Cantor corrected The most potent amylase-producing fungal culture (MSF-
distance model. Identification was done on the pair wise alignment 9) was inoculated into the flask containing amylase assay
algorithms and phylogenetic tree. media at different pH such as 3.0, 5.0, 7.0, 9.0 and 11.0.
The enzyme activity was maximum at pH-5.0, that is,
Phylogenetic analysis
80.68±0.09U mL-1 whereas minimum activity; that is,
22.67±0.33 U mL-1 was observed at pH-3.0. At pH-7.0
Sequence similarity search was made for the 18S rDNA sequence and 9.0 the enzyme activity was 67.44±0.23 U mL-1 and
of the fungal strain MSF-9 by applying its sequence to BLAST 58.58±0.41 U mL-1 respectively. The enzyme activity was
search for in NCBI. The Evolutionary tree was inferred by using first increased up to pH 5.0 and then gradually decreased
neighbor-joining method (Thompson et al., 1997). The CLUSTAL X with the increase of pH (Figure 3).
package was used for multiple alignment and identification of the
strains.
Effect of NaCl
RESULTS AND DISCUSSION
The isolate MSF-9 was inoculated into the flask
Diversity analysis containing amylase assay broth at different NaCl
concentrations such as 0, 0.5, 1, 1.5, 2 and 2.5%. The
The total fungal diversity was found to be maximum that enzyme activity was maximum at 1% NaCl; that is,
is, 74% at Bhitarakanika, 14% at Dhamra, 6% at 36.89±0.26 U mL-1, whereas minimum activity
Mahanadi, 5% at Devi and least 1% at Budhabalanga (6.76±0.063 U mL-1) at 0% NaCl. At various concen-
Sahoo et al. 4341
Identification
SEM Study
MSF-3
(1) (2)
MSF-7
(1) (2)
MSF-9
(1) (2)
(a) (b)
Figure 8. SEM photos of the fungal isolate (MSF-9) having magnification at 23.98 K×10,000 (a) and
8.78 K × 10, 000 (b).
1000bp
900bp
800bp
700bp
600bp 555 bp
500bp
400bp
300bp
200bp
100bp
A B
Figure 9. Agarose gel electrophoresis of the genomic DNA (A) and 18S rDNA PCR Product (B) of
MSF-9 (M- 100bp Marker).
strain was found to grow luxuriantly in CDA media and mangrove isolate P.citrinum produced more amylase
the SEM study indicates the general Penicillium. The enzyme. Hence this potent fungal strain can also be used
molecular study that is, 18S rDNA analysis showed that in large scale industry for various useful product
the MSF-9 isolate has 96% similarity with Penicillium formation.
citrinum GZU-BCECYN60-2 (Table 4, Plate 35). The
phylogenetic analysis showed the similarity pattern of P. Conflict of Interests
citrinum (MSF-9) with other species (Figures 9 and 10). It
can be concluded from the present study that the The author(s) have not declared any conflict of interests.
4346 Afr. J. Biotechnol.
0.005
Figure 10. Evolutionary relationships of 11 taxa of MSF-9.