Histotechnique
Histotechnique
Histotechnique
Histopathology definition:
The human tissue comes from the surgery (Biopsy) and/or from the dissection
room (Autopsy).
From surgery two types of biopsy could be obtained:
1. Incisional Biopsy: A small piece of lesions or tumor which sent for diagnosis
before final removal of the lesion or the tumor .
2. Excisional Biopsy: If the whole of the tumor or lesion is removed for
examination and diagnosis it is called excisional biopsy.
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FIXATION
It is a complex series of chemical events which brings about changes in the
various chemical constituents of cell like hardening, however the cell morphology
and structural detail is preserved. Unless a tissue is fixed soon after the removal
from the body it will undergo degenerative changes due to autolysis and
putrefaction so that the morphology of the individual cell will be lost.
Principle of fixation
If a fresh tissue is kept at room temperature it will become liquefied with a foul
odour mainly due to action of bacteria i.e. putrefaction and autolysis so the first
and fore most aim of fixation is
1. To preserve the tissue in as life like manner as possible.
2. To prevent postmortem changes like autolysis and putrefaction.
Autolysis :is the lysis or dissolution of cells by enzymatic action probably as a
result of rupture of lysosomes.
Putrefaction: The breakdown of tissue by bacterial action often with formation of
gas.
3. Preservation of chemical compounds and microanatomic constituents so
that further histochemistry is possible.
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4. Hardening : the hardening effect of fixatives allows easy manipulation of
soft tissue like brain, intestines etc.
5. Solidification: Converts the normal semifluid consistency of cells (gel)to an
irreversible semisolid consistency (solid).
6. Optical differentiation it alters to varying degrees the refractive indices of
the various components of cells and tissues so that unstained components
are more easily visualized than when unfixed.
7. Effects of staining certain fixatives like formaldehyde intensifies the staining
character of tissue especially with haematoxylin.
Properties of fixatives
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6. Amount of fixative: The fixative should be at least 15-20 times the bulk of
tissue. For museum specimens the volume of fixative is > 50 times. Note : If
the specimen is large then see that the sections are made to make slices
which have a thickness of 3 – 5 cm so that fixative can penetrate the tissue
easily.
Simple fixatives
(I) Formaldehyde:
Formaldehyde is a gas but is soluble in water to the extent of (37 - 40%) w/v. This
solution of formaldehyde in water is called formalin or full strength formalin.
Formalin is one of the commonly used fixative in all laboratories since it is cheap
penetrates rapidly and does not over harden the tissues.
• It preserves the proteins by forming cross linkage with them and the tissue
component.
• Pure formalin is not a satisfactory fixative as it over hardens the tissue. A 10%
dilution in water (tap or distilled) is satisfactory. Since it oxidizes to formic acid if
kept standing for long period so it should be neutralized by phosphates or calcium
carbonate otherwise it tends to form artifact; a brown pigment in tissues. To
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remove this pigment picric alcohol or saturated alcoholic sodium hydroxide may
be used.
• Concentrated formalin should never be neutralized as there is a great danger of
explosion.
• The commercial formalin becomes cloudy on standing especially when stored in
a cool place due to formation of precipitate of paraformaldehyde which can be
filtered.
• Formalin on prolonged exposure can cause dermatitis its vapour may damage
the nasal mucosa and cause sinusitis.
• Time required for fixation at room temperature (12 hours) for small biopsies, (4-
6 hours) at (65°C) fixation occurs in (2 hours).
• Absolute alcohol alone has very little place in routine fixation for
histopathology. It acts as a reducing agents, become oxidized to acetaldehyde and
then to acetic acid.
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• Methyl alcohol is used for fixing blood and bone marrow smears.
(III) Acetone
• Mercuric chloride is a very good salt employed in fixing but is rarely used alone
because it causes shrinkage of the tissue.
• It brings about precipitation of the proteins which are required to be removed
before staining by using potassium iodide in which they are soluble.
•The size (thickness) of the tissue to be fixed in mercuric chloride is important,
since if the tissue is more than 4 mm, then it hardens the tissue at the periphery
whereas the Centre remains soft & under fixed.
• It penetrates rapidly without destroying lipids.
• It neither fixes nor destroys carbohydrates.
• Treatment of the tissue with mercuric chloride brings out more brilliant staining
with most of the dyes.
• Tissues fixed with mercuric chloride containing fixatives contain black
precipitates of mercury which are removed by treating with 0.5% iodide solution
in 70% ethanol for 5-10 minutes, sections are rinsed in water, decolourized for 5
minutes in 5% sodium thiosulphate and washed in running water.
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(V) Picric acid
• It is a strong oxidizing agent and brings about fixation by forming cross links with
proteins.
• It gives excellent preservation of details of a cell, therefore exclusively used for
electron microscopy.
• It fixes fat e.g. myelin.
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• It also demonstrates fat when (0.5 - 2%) aqueous solution is used it gives a black
color to fat.
•It causes the cells to swell hence can never be used alone but should be used
with fixatives causing cell shrinkage.
(IX) Glutaradehyde
Compound fixatives:
• Some fixatives are made by combining one or more fixative so that the
disadvantage of one are reduced by use of another fixative.
• All these compound fixative have their own advantages and disadvantages.
• Choice of fixative - The choice of fixative depends on the tissue is going to be
receive e.g. what is the chemical structure that needs to be stained ? If fat is to
be demonstrated the formalin fixed tissue is better. For demonstration of
glycogen formalin should never be used.
1. For achieving good fixation it is important that the fixative penetrates the
tissue well hence the tissue section should be (3 – 5 mm) thick, so that
fixation fluid penetrates from the periphery to the Centre of the tissue.
2. For fixation of large organs perfusion method is used i.e. fixative is injected
through the blood vessels into the organ.
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3. For hollow viscera fixative is injected into the cavity e.g. urinary bladder,
eyeball etc.
4. Ratio of volume of fixative to the specimen should be 1:20.
5. Time necessary for fixation is important routinely 10% aqueous formalin at
room temperature takes 12 hours to fix the tissue. At higher temperature
i.e. 60-65°C the time for fixation is reduced to 2hours.
Classification of fixatives:
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• Specific features
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iii. Gives rapid and even penetration with minimum shrinkage.
iv. Tissue left in its for over 24 hours becomes bleached and
excessively hardened.
v. Tissue should be treated with iodine to remove mercury
pigment.
9. Zenker's fluid (a) Mercuric chloride 5gm(b) Potassium dichromate 2.5
gm.(c) Sodium sulphate 1.0 gm(d) Distilled water to 100 ml(e) Add
immediately before use : Glacial acetic acid : 5 ml
Specific features
i. Good routine fixative
ii. Give fairly rapid and even penetration
iii. It is not stable after the addition of acetic acid hence acetic
acid (or formalin) should be added just before use
iv. Washing of tissue in running water is necessary to remove
excess dichromate.
10. Zenker formal (Helly's fluid) (a) Mercuric chloride - 5 gm.(b) Potassium
dichromate 2.5 gm.(c) Sodium sulphate 1.0 gm.(d) Distilled water to 100
ml(e) Add formalin immediately before use 5 ml
Specific features
i. It is excellent microanatomical fixative
ii. Excellent fixative for bone marrow spleen and blood containing
organs
iii. As with Zenker's fluid it is necessary to remove excess
dichromate and mercuric pigment
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11.B5 stock solution: Mercuric chloride 12 gm. Sodium acetate 2.5gm,
Distilled water 200ml, B5 Working solution: B5 stock solution 20ml
Formalin (40% w/v formaldehyde) 2 ml
• Specific Features
i. B5 is widely advocated for fixation of lymph node biopsies both
to improve the cytological details and to enhance
immunoreactivity with antiimmunoglobulin antiserum used in
phenotyping of B cell neoplasm.
Procedure
Fix small pieces of tissue (7x7x2.5mm) for 1-6 hours at room temperature
12. Bouin's fluid(a) Saturated aqueous picric acid 75ml(b) Formalin 25ml(c)
Glacial acetic acid 5 ml
• Specific features
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13. Gender's fluid - better fixative for glycogen.(a) Saturated picric acid in 95%
v/v/ alcohol 80ml(b) Formalin 15ml(c) Glacial acetic acid 5ml
Cytological fixatives
Subdivided into:
(A) Nuclear fixatives (B) Cytoplasmic fixatives.
(A) Nuclear fixatives : As the name suggests it gives good nuclear fixation. This
group includes
1. Carnoy's fluid.(a) Absolute alcohol 60ml(b) Chloroform 30ml(c) Glacial
acetic acid 10 ml
• Specific features
- It penetrates very rapidly and gives excellent nuclear fixation.
- Good fixative for carbohydrates.
- Nissil substance and glycogen are preserved.
- It causes considerable shrinkage.
- It dissolves most of the cytoplasmic elements. Fixation is usually complete in 1-2
hours. For small pieces 2-3 mm thick only 15 minutes is needed for fixation.
2. Clarke's fluid(a) Absolute alcohol 75 ml(b) Glacial acetic acid 25 ml.
• Specific features
- Rapid, good nuclear fixation and good preservation of cytoplasmicelements.
- It is excellent for smear or cover slip preparation of cell cultures or chromosomal
analysis.
3. New Comer's fluid.(a) Isopropranolol 60 ml(b) Propionic acid 40ml(c)
Petroleum ether 10 ml.(d) Acetone 10 ml.(e) Dioxane 10 ml.
• Specific features
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- Devised for fixation of chromosomes
Histochemical fixatives
Vapour fixatives
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Secondary fixation
- After the use of certain fixative it in urgent that the tissues be thoroughly
washed in running water to remove the fixative entirely. Washing should be
carried out ideally for 24 hours. Tissues treated with potassium dichromate,
osmium tetraoxide and picric acid particularly need to be washed thoroughly with
water prior to treatment with alcohol (for dehydration).
Tissue fixative of choice and time for fixation
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Bone marrow biopsy Bouin's fixative in running (2½) hours followed
by washing in running water over night.
Spleen and blood filled cavities Zenker's fluid (1-6) hours.
Lymph node B5 (12-18) hours.
Mitochondria, phosphatides and Nissil substance Carnoy's fluid (1-2)
hours
Chromosome / cell culture Clarke's fluid (1-2) hours.
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DECALCIFICATION
Definition
Decalcification is done to assure that the specimen is soft enough to allow cutting
with the microtome knife. Unless the tissues is completely decalcified the sections
will be torn and ragged and may damage the cutting edge of microtome knife.
Note:
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The Criteria of a good decalcifying agents area :
1. Complete removal of calcium.
2. Absence of damage to tissue cells or fibers.
3. Subsequent staining not altered.
4. Short time required for decalcification.
Nitric acid
- 5-10% aqueous solution decalcification slower than nitric acid but still
rapid. Fairly good nuclear staining.
Weak acid e.g. formic acid, acetic acid and picric acid of these formic acids is
extensively used as acid decalcifier. 5-10% aqueous solution or with additives like
formalin or buffer are used.
Formic acid
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Aqueous nitric acid
Procedure:
Perenyi's fluid
10% nitric acid 40ml , Absolute alcohol 30 ml. 0.5% chromic acid. 30ml.
Note:
- all these ingredients may be kept in stock and should be mixed immediately
before use.
- This solution may acquire of blue violet tinge after a short while but this will
have no effect in the decalcifying property.
- It is slow for decalcifying hard bone but excellent fluid for small deposits of
calcium e.g. calcified arteries, coin lesions and calcified glands. Also good
for human globe which contains calcium due to pathological conditions.
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There is little hardening of tissue but excellent morphologic detail is
preserved.
Formalin nitric acid
Nitric acid causes serious deterioration of nuclear stain ability which partially
inhibited by formaldehyde. Old nitric acid also tends to develop yellow
discoloration which may be prevented by stabilization with 1% urea.
Surface decalcification
The surface of the block to be decalcified is trimmed with scalpel. The block is
then placed in acid solution at 1%hydrochloric acid face downwards so that acid
bathes the cut surface for 15-60 min.
As penetration and decalcification is only sufficient for a few sections be cut the
block shall be carefully oriented in microtome to avoid wastage of decalcified
tissue.
Decalcification of Bone marrow biopsy.
Tissue after fixation in Bouin's or Zenker's fixative is decalcified for (2½) hours
followed by an hour of washing. The tissue is then dehydrated beginning with
alcohol.
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Use of Ion exchange resins
Ion exchange resins in decalcifying fluids are used to remove calcium ion from the
fluid. Therefore ensuring a rapid rate of solubility of calcium from tissue and
reduction in time of decalcification. The resins an ammoniated salt of sulfonated
resin along with various concentrations of formic acid are used. The resin is
layered on the bottom of a container to a depth of = ½ inch, the specimen is
allowed to rest in it. After use, the resin may be regenerated by washing twice
with dilute N/10HCL followed by three washes in distilled water. Use of Ion
exchange resin has advantage of (i) faster decalcification (ii) tissue preservation
and(iii) cellular details better preserved.
Chelating agents
Chelating agents are organic compounds which have the power of binding certain
metals. Ethylene-diamene-tetra-aceticacid (EDTA), disodium salt called Versenate
has the power of capturing metallic ions. This is a slow process but has little or no
effect on other tissue elements. Some enzymes are still active after EDTA
decalcification. Versenate 10 gm.Distilled water 100 ml(pH 5.5 to 6.5)Time 7-21
days.
Electrolytic method
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Washing after decalcification:
Through washing of the tissue before processing is essential to remove acid (or
alkali if neutralized has been carried out) which would otherwise interfere with
staining)
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Treatment of hard tissues
Keratin and chitin are softened by use of concentrated sulphuric and with that aid
of heat keratin is completely dissolved from the tissue sections. But much tissue
distortion will also occur.
Prenyi's fluid
Immersing hard tissues in this solutions for 12-24 hours will make sectioning
easier and excellent preparation of calcified arteries, thyroid and calcified glands
is possible.
Lendrum's technique
It is very useful for tissues which became hard at the time of fixation. Following
washing out of the fixative, tissue is immersed in a 4% aqueous solution of phenol
for 1-3 days.
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TISSUE PROCESSING
Specific objective;
The tissue processing is the heart of any tissue section which will be cut
adequately only if the tissue is properly preserved and processed. The study of
this topic is to understand the coarse and fine details of tissue processing so that
excellent sections are obtained.
Definition
The labeling
The label should remain throughout the entire processing and later as
permanent record keeping. To ensure this most laboratories have a
numbering system for each specimen. As soon as the specimen is received
it is given a specific individual number, which is also recorded in the register
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with the details like patient's name, name of the doctor referring it, nature
of tissue is noted.
Labeling should not be done using ordinary ink as it gets dissolved in the
reagent used during processing.
Thin white card with a soft lead pencil, typed or printed labels are
satisfactory. To ensure that the label remains with their correct specimens
tissues processing baskets can be used. These are small perforated metal
containers in which the tissue and labels are placed. these containers can
be transferred as such from reagent to reagent. Alternatively use of tissue
tek system in which the tissue identity is written on the cassette and
retained as permanent record during sectioning and storage of tissue
blocks.
Principle of tissue processing
The tissue is embedded in a solid medium by the help of first removing the tissue
water which is then replaced by any solid medium such as paraffin wax so that
the tissue is rendered firm enough to enable thin sections to be cut, at the same
time, the tissue is soft (not so hard) to enable microtome knife to cut the sections.
The embedding medium has to thoroughly permeate the tissue in fluid form so
that it solidifies without any damage to the tissue. The most satisfactory
embedding medium used in routine histology is paraffin wax. Most of the tissue
fixatives are aqueous fixatives so before the tissue can be embedded in paraffin
wax it is necessary that the water and some of the lipid tissue fluids be removed
completely by a variety of compounds through a process called dehydration. Prior
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to paraffin wax embedding and impregnation the tissue must be subjected to the
following steps:
1. Fixation
2. Dehydration.
3. Clearing - with a substance which is totally miscible with both the dehydrating
agent which precedes it, and embedding agent which follows it.
4. Embedding.
All these 4 processes depend upon complete impregnation of the tissue by the
agent like paraffin wax being used. Before going into the details of these 4 stages
it is important to understand the factors which influence the rate and efficiency of
tissue impregnation
Factors influencing the rate of impregnation
Viscosity: Larger the molecule the higher is the viscosity slower is the rate of
penetration.
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Vacuum: Use of reduced pressure in well known in the impregnation of tissue by
molten paraffin wax. It hastens the process. Use of vacuum during dehydration
and clearing has little advantage except removal of air bubble trapped within the
tissue.
STEPS OF PARAFFIN WAX EMBEDDING
1. Fixation
Usually tissue that is received at the laboratory is already fixed but before
proceeding further check if the fixation is complete.
2. Dehydration
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has been diluted upon absorption of water from the tissues. The change of colour
of copper sulphate from white to blue indicates that both alcohol and water
should be changed. Use of copper sulphate enhances the process of dehydration
and also prolongs the life of alcohol.
Other dehydrating agents:
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3. Clearing
Definition:
Clearing means appearance of tissue after it has been treated by the fluid chosen
to remove the dehydrating agent.
Most of these tissues have similar refractive index to that of protein, therefore
the tissue is left translucent. Clearing agent is required when the dehydrating
agent is not miscible with the impregnating medium. It is essential for a clearing
agent to be miscible both in dehydrating agent as well as embedding agent.
Commonly used clearing agents are as follows :
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• It is very expensive .Care should be taken not to confuse it with cedar wood oil
(microscopic) used with oil immersion lens.
Techniques of clearing
4. Impregnation
Definition:
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Points to be remembered during use of paraffin wax
1. It should be free from dust, grit and other foreign matter.
2. It should not contain water, which causes it to crystallize and turn it white.
3. The wax has to be filtered before use by use of ordinary filter paper.
4. Higher melting point waxes are hard to ribbon . For impregnation the wax oven
has to be kept at high temperature, making the tissue hard, too low melting point
wax may not be hard enough to support the tissue during cutting. If the wax is
overheated and remains in that state for a long time, it tends to crystallize and
become useless.
Impregnation with Paraplast
This is mixture of highly purified paraffin and several plastic polymers.
It has greater elasticity than normal paraffin wax, therefore, the results are
superior.
It ribbons well allowing almost wrinkle free serial sections to be cut with
ease at 4 micron thickness.
It should not be used for thin walled structures as it prevents complete
expansion of the specimen.
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Technique of impregnation
The tissue is transferred from clearing agent to molten paraffin wax. The amount
of wax should be 25-50 times the volume of tissue. The tissue must be submitted
to 3 changes in wax. The temperature of the wax bath should be 2-3°C above the
melting point of wax.
Time of impregnation
1. Size and type of tissue: The thicker the tissue the longer will be the time
required for wax to penetrate to the center in addition a thick tissue has more of
clearing agent so more changes of wax are necessary to remove it. If even small
amounts of clearing agents remains with the wax this will cause crystallization and
produce crumbling of the sections during cutting. The type of tissue is also
important since bone, skin, CNS needs twice as long as soft tissue like liver or
kindly. Tissue like muscle and fibrous tissue tends to over harden and become
brittle in wax bath so the time for impregnation must be kept to a minimum. The
reduction of time can be achieved by using vacuum embedding medium.
2. Clearing agent employed, Some clearing agents are more rapidly and easily
cleared than other e.g. Xylene, benzene and toluene are easiest to remove, and
one change of wax is normally sufficient; whereas for chloroform and carbon
tetrachloride 2-3changes are needed.
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3. Use of vacuum embedding oven With the use of normal paraffin oven, 2
changes of paraffin wax for a period of 4 hours are needed but by using vacuum
embedding oven this time may be halved
5. Embedding
Types of moulds:
a) Leuckhart's L pieces - These are two 'L' which are resting metal usually brass,
which are resting on a flat metal or glass plate.
Techniques of casting
1. Molten paraffin wax which is heated at a temperature 2-3° above the melting
point is poured into the mould to an adequate depth so as to cover the thickest
tissue block.
2. The wax touching the mould will quickly form a thin semi solid layers, Now
introduce the tissue with a pre warmed forceps to prevent the wax to stick to it.
The tissue is pressed in this semisolid wax to orient it at the bottom of mould in a
correct plane.
3. Fix the label in position by pressing one edge against solidifying wax usually
sides of the mould are preferred.
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4. As soon as a film of solid wax is formed on the surface, the whole block with
mould are submerged in cold water at 20°C. If this is not done there will be
crystallization of wax, using ice water to do initial cooling will also cause the block
to crack.
5. When blocks are set hard they are removed from mould. The tissue surface
towards the mould base is from where the sections are to be cut this surface
should be trimmed lightly with a scalpel so as to expose the tissue.
1. Paraffin should not be allowed to cool around the tissue to be blocked for this
before introducing the tissue in the mould it should be kept in heated wax or in
cassette placed over thermostatic hot plate.
2. To prevent excess of wax solidifying on the bottom of the block during winter
pre warmed moulds may be used.
3. The cutting surface of the tissue should be facing at the bottom of the mould.
5. If small biopsy fragments have to be casted, the largest piece should be first
blocked and other pieces should be as near it as possible.
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8. Smear mineral or machine oil on the inner surface of the mould for facilitating
easy removal of block.
9. Whitish areas around tissue in block denotes crystallization which may be due
to moisture or due to incomplete removal of clearing agent. Most tissue sections
are cut from the largest area but some tissue needs special mention such as:.
(1. Tissue of tubular nature are cut transversely so should be embedded vertically.
It has 2 advantages
1. Transferring the tissue mechanically from one reagent to another can be done
both by day and night.
(a) Tissue containers - These are also the cassettes. The tissue to be processed is
placed in an appropriate container, together with a label and the lid snapped on.
These containers are placed in the tissue basket in which they remain throughout
the whole process.
(b) Beakers and wax baths - Most machines are equipped with ten beakers and 2
wax baths thermostatically controlled at 56°C + 4°C.The beakers are filled with
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appropriate fluids and wax is placed in the wax baths after ensuring that main
switch is on, so as to keep the wax in molten state.
(c) Stirring mechanism - The basket is attached to the arms of the machine on
which one arm is designed in such a manner so as to bring about the rotation of
the basket nearly at the rate of one revolution per minute.
(d) Timing mechanism - Timer is meant to keep the tissue in different reagents
and wax for an optimum time. If kept for longer or shorter period than necessary,
tissue will not be adequately processed.
Points to noted
1. Fluid and wax beakers must be filled up to appropriate mark and located in
their correct position in the machine.
4. Wax bath thermostats should be set at satisfactory levels usually 2-3°C above
the melting point of wax.
6. Timing should be set with utmost care when loading the machine.
7. Paraffin wax baths should be checked to ensure that the wax is molten.
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Automated processing schedule
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6. Cedar wood oil 1 change 1 hour.
7. Paraffin wax one change 2 hours.
8. Paraffin wax four changes 1 hour each, Vacuum the last paraffin change.
Embed and cool quickly. Cut as desired.
Processing schedule for skin
6. Xylene 20 minutes.
7. Wax I 3 hours.
8. Wax II overnight.
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SECTION CUTTING
Introduction:
To master in the art of good section cutting it is required
1. To have a thorough knowledge of the equipment used.
2. Quality of equipment.
3. Quality of processing the tissue.
Microtome Knives :
The knife is probably the greatest single factor in producing good sections.
Types of microtome knives :
Microtome knives are classified by the manner in which they are ground and seen
in their cross section.
1. Plane wedge.
2. Plano concave.
3. Biconcave.
4. Tool edge
Plane wedge : It is used for paraffin and frozen sections.
Planoconcave : used for celloidin section since the blade is thin it will vibrate
when used for other harder materials.
Biconcave : It is recommended for paraffin section cutting on rocking and sledge
type of microtome.
Tool edge :This is used with a heavy microtome for cutting very hard tissues like
un-decalcified bone.
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General description:
In the description of knives the expressions “Heel” and “Toe” are used to indicate
which end of the cutting edge is referred to. The heel of the knife is the angle
formed by the cutting edge and the end of the knife nearest to handle. The “toe”
of knife is the angle formed by the cutting edge and the end of the knife farthest
from the handle.
Sharpening of microtome knives
3. Aloxide – Fairly fast but coarse and not good for finishing a knife.
Method of honing
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either flexible /hanging or rigid. In stropping usually firm surface is preferred.
Action is reverse of honing toe to heel direction of stropping is also opposite.
Assessment of the sharpened knife edge:
Examine the edge of the knife by reflected light and under microscope to assess
the honing and stropping.
Care of the knife
1. Keep the knife covered in the box when not in use.
2. Oil the knife to prevent corrosion.
3. Always clean knife with xylol before and after use.
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Types of microtome
1. sliding microtomes.
2. Rocking microtome.
3. Rotary microtome.
7. Ultra microtome.
Equipment required:
1. Microtome.
2. Water bath preferably thermostatically controlled.
3. Hot plate or drying oven thermostatically controlled.
4. Fine pointed forceps.
5. Small hair brush.
6. Seeker.
7. Scalpel.
8. Clear cloth or paper towel.
9. Slide rack.
10. Clean glass slides.
11. Section adhesive.
12. Fluff less blotting paper.
13. Ice cubes.
14. Diamond marker pencil
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Water bath: Thermostatically controlled for paraffin wax of melting point56ºC, a
water temperature of 45ºC is sufficient ordinary distilled water is satisfactory;
addition of a trace of detergent to water is beneficial in flattening of sections.
Hot plate or drying oven : Drying of sections at around the melting point of wax is
satisfactory
Brush, seeker, forceps: needed to remove folds and creases in sections after
floating out.
Slides: Majority of sections fit comfortably on a 76 x 25 x 1.2 mm slide.
Diamond pencil: needed to write the identification details like name or specific
number.
Section adhesives: An adhesive is a substance which can be smeared on to the
slides so that the sections stick well to the slides. Most of the tissue sections
which are adequately thin and thoroughly dried without any air bubble trapped
under them do not require an adhesive, as in case of routine H and E staining, but
for histochemical methods requiring alkaline solutions e.g. ammonia tend to
remove sections from slide for such cases adhesive is required. Also adhesive is
required for tissues like brain, spinal cord, blood clot, decalcified tissues which
have a tendency to detach themselves from the slide. Tissue impregnated with
ester wax also require section adhesive.
Types of adhesive
Albumin, Gelatin, Starch, Cellulose, Sodium silicate Resin, Poly L Lysine Adhesive
are either added to water bath or smeared thinly on slide.
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This is the most popular adhesive for routine use :
2. Glycerol 50 ml
3. Sodium salicylate 1 ml Mix and agitate the ingredients filter through coarse
filter paper smear fluid over the slide. This fluid may be diluted 1:20 with distilled
water and section floated on the fluid, while manipulating the albuminized slide
under water in the floatation bath to pick up the section, avoid dipping the entire
slide as the albumin may wash off.
Section cutting of paraffin embedded tissue
Fixing of block
1. Fix the block in the block holder and the microtome knife in such position that
it will be clear of the knife when it is in position, block may be fixed directly or it
may be fixed to a metal carrier which in turn is fixed to the microtome.
2. Insert the appropriate knife in the knife holder and screw it tightly in position.
Adjust if required. The clearance angle should be set at 3-4degree and angle of
slope should be set permanently at 90 degree. It is important to tighten the knife
clamp screw securely and block clamp screws most also be firm. The exposed
ends of the knife must all the times be protected by magnetic or clip on knife
guards to avoid any accidents.
Move the block forward so that the wax block is almost touching the knife. To
trim away any surplus wax and to expose a suitable area of tissue for sectioning,
the section thickness adjusters are set at 15 microns.
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4. On exposing a suitable area of tissue the section thickness is set to the
appropriate level for routine purposes to 4-6 microns.
5. Apply ice to the surface of the block for a few seconds and wipe the surface of
block free of water. This step is optional but makes sections cut easily.
6. Note that the whole surface of the block will move parallel to the edge of the
knife in order to ensure a straight ribbon of sections.
7. The microtome is now moved in an easy rhythm with right hand operating the
microtome and left hand holding the sections away from the knife. The ribbon is
formed due to the slight heat generated during cutting, which causes the edges of
the sections to adhere. If difficulty is experienced in forming the ribbon it is
sometimes overcome by rubbing one of the edges of the block with finger.
9. The action in floating out must be smooth with the trailing end of ribbon
making contact with water first to obtain flat sections with correct orientation,
floating out with the shiny surface towards the water is essential. When the
ribbon has come to rest on water the remaining wrinkles and folds are removed
by teasing apart by using forceps or seeker.
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10. Picking up sections
11.Drying of section :
Sections are then kept in incubator with a temperature 5-6ºC above the melting
point of wax i.e. at 60ºC for 20-60 minutes. It is better to overheat than under
heat. If the sections are not well dried they may come off during staining. The
sections should not be allowed to dry without a good contact with the slide ,such
sections will come off during staining.
Bubbles may get trapped under a section while in the tissue flotation bath. These
need to be removed before the section are picked on the slides this may be done
by:
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3. Place the sections on slide and run 2% alcohol under them. Any folder bubbles
will be removed.
To cut a tissue which has a tendency to crumble or fragment while cutting. With
the mouth open and sounding a soft long drawn 'H' thus 'h h h h h ' exhale gently
on to the section as it leaves the knife and cut very slowly. This also helps to
reduce the effect of static electricity. If sections fragment due to large amount of
blood in tissue, the block should be coated with celloidin between sections. The
surface of the block should be wiped dry, and painted with a camel hairbrush
which has been dipped in 1% Celloidin. After allowing few seconds for the
Celloidin to dry a section is cut in usual way. It must be remembered that when
floating the sections to remove the creases, the celloidin layer must be
uppermost, and the water should be a little hotter than usual to counteract the
effect of celloidin. Following drying in usual way, the cellodin is removed with
equal parts of ether and alcohol before removing wax with xylol.
Serial sectioning:
Serial sectioning may be needed to study the track of some structures or to find
the extent of a lesions. Sections are collected from the very first cut that includes
any tissue. Ribbons of ten - 1-10, 11-20, 11-20, 21-30 so on are picked up and
mounted on the slides.
Step sections:
This is an alternative for serial sections and for the same reason. Sections are
taken at periodic level through the block.
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Cooling block and knife:
In general keep ice cubes ready at hand and cool the surface of block and knife
before cutting.
Below are given the various defects, reasons for the defect and the remedy for
the same.
Faults in cutting
1. Fault - Tear or scratch across part of section, Cause - Calcium, Carbon, or Suture
etc., in the tissue or wax Remedy- Examine block under magnifying glass. If
calcium is present, decalcify block. Remove suture from the tissue with scalpel
point. If dust is in wax - Re-embed
2. Fault - Holes in the section. Cause - Air bubbles in the tissue or wax A piece of
hard material in tissue A soft piece of tissue in block Remedy- Re-embed Remove
hard material if possible Reprocess specimen
3. Fault - Cracks across the section parallel to knife Cause - A blunt knife Knife tilt
too small. Block too hard for thickness of specimen Remedy- change knife Adjust
tilt Warm block slightly or re-embed in soft wax.
4. Fault - Section shows thin and thick horizontal lines (chatters) Cause - A loose
knife A loose block A blunt knife Extremely hard tissue Remedy- Tighten knife
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and/or block change the knife Soften the tissue if possible or embed in harden
wax.
5. Fault - section cut thick and thin alternative Cause - Knife tilt is too great and is
compressing the block Remedy Adjust tilt.
6. Fault - Section compress at one end. Cause - Blunt spot on the knife A soft spot
in the wax, due to presence of clearing agent Remedy- Move block along the knife
or change knife. Re infiltrate tissue and re-embed
7. Fault - Section curves to one end. Cause - Edge of block is not parallel to knife.
A dull spot on knife. Remedy- Trim edges Move block along knife or change knife.
8. Fault - Section curl as they are cut Cause - Blunt knife Sections too thick Too
much tilt to knife Remedy- change knife Adjust microtome Correct the tilt
9. Fault - Sections lift from knife on upward travel of block Cause - Blunt knife Too
much tilt to knife A buildup of wax debris behind knife A greasy knife. Remedy-
change knife Correct the tilt Clean the knife
10. Fault - Knife bites deeply into block Cause - A loose knife A loose block
Remedy- Tighten the knife and block.
11. Fault - The block no longer feeds towards knife Cause - Forward feed
mechanism had expired Remedy- Release the safety locking catch, man back off
feed mechanism and readjust knife holder
12. Fault - Sections crumble on cutting Cause - Knife is blunt Wax is too soft; has
crystallized due to slow cooling or contamination with water or clearing agent.
Defective processing e.g. incomplete fixation, dehydration, clearing or
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embedding. Remedy- change knife .Re-embed and block with fresh wax
Reprocess
13. Fault - Failure of block to ribbon Cause - Block not parallel to knife Paraffin too
hard. Knife tilted too much Sections too thick Remedy- Correct the alignment Re-
embed Correct the tilt Adjust the section thickness.
1. Fault - The tissue is shrunken away from wax Cause - Insufficient dehydration
Remedy- Reprocess
2. Fault - The tissue is too soft when block is trimmed Cause - Insufficient fixation
Remedy- Reprocess
3. Fault - Specimen crumbles and drops out of the wax leaving a rim of wax as a
section Cause - Insufficient infiltration Overheated paraffin bath causing tissue to
become hard and brittle Remedy- Re infiltrate and re-embed Service the paraffin
bath
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STAINING
The sections, as they are prepared, are colorless and different components
cannot be appreciated. Staining them by different clouded dyes, having affinities
of specific components of tissues, makes identification and study of their
morphology possible. Certain terminologies used in the following account are
given below.
Vital staining: Staining of structures in living cells, either in the body (in vivo) or in
a laboratory preparation (in vitro). e.g. Janus green is taken up by living cells and
stains the mitochondria.
Metachromatic staining: There are certain basic dyes belonging to aniline group
that will differentiate particular tissue components by staining them a different
color to that of original dye. The phenomenon is known as metachromasia. The
tissue elements reacting in this manner are said to be exhibiting metachromasia.
The generally accepted explanation of this phenomenon is that change in color is
due to polymerization. Sulfated substances are highly metachromatic e.g. Mast
cell granules. These contain Heparin which is highly sulfated. Some of the
common metachromatic dyes are :Methylene blue Methyl violent Thionin Crystal
violent Toluidine blue Thionin and toluidine blue dyes are commonly used for
quick staining of frozen selection using their metachromatic property to stain
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nucleus and cytoplasm differently. Tissue components often demonstrated by
metachromatic stains :Amyloid material, Mast cell granules Mucin Cartilage
Direct staining: Application of simple dye to stain the tissue in varying shades of
colors.
Progressive staining:
Stain applied to the tissue in strict sequence and for specific times. The stain is
not washed out or de-colorized because there is no over staining of tissue
constituents. Staining is controlled by frequent observation under microscope
Regressive staining:
Tissue is first over stained and then the excess stain is removed from all but the
structures to be demonstrated. This process is called differentiation and should
always be controlled under microscope.
De-colourization:
Partial or complete removal of stain from tissue sections. When the color is
removed selectively (usually with microscopic control) it is called differentiation.
In case decolourization is to re stain the selection with some other stain, acid
alcohol treatment is the method of choice.
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Differentiation:
Impregnation:
Counter stains:
A counter stain is the application to the original stain, usually nuclear, of one or
more dyes that by contrast will bring out difference between the various cells and
tissues. A heavy counterstain is to be avoided lest it mask the nuclear stain. It can
be done either by using dilute stain or cutting down the staining time. Some
counterstains which are acidic may lighten or remove the nuclear stains.
Mordants:
Substance that causes certain staining reactions to take place by forming a link
between the tissue and the stain. The link is referred as lake. Without it, dye is not
capable of binding to and staining the tissue. e.g. Ammonium and Potassium alum
for haematoxylin.
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Accentuators:
These are substances that causes an increase in the selectively or in the staining
power of dye. Thus they lead to more intense staining. e.g. Phenol in Carbol
fuchsin, KOH in Mehtylene blue.
Leuco compounds:
According to source.
According to affinity to tissues.
According to chemical composition.
Natural dyes
These are very few in numbers. They are mainly two in common use.
1. Haematoxylin
This is the most popular dye used as a nuclear stain. It is derived from the log tree
mainly found in Mexico. It develops staining property after oxidation. It is a weak
dye and to make it give sharp stain a mordant is needed.
2. Carmine
Synthetic dyes
Most of these are Aniline base and derived from coal tar. These aniline dyes offer
wide range of colour and action. Chemical composition may be basic, acidic,
55
amphoteric (neutral). According to these characters stain different components of
tissue.
Basic dyes
These are cationic dyes and stain nuclei, basophilic granules or bacteria.
Acidic dyes
These are anionic dyes and stain mainly cytoplasm, eosinophilic granules.
Theories of staining
Physical theories :
1. Simple solubility e.g. Fat stains are effective because the stain is more soluble
in fat than in 70% alcohol.
Chemical theories:
It is generally true that acid dyes stain basic elements (Cytoplasm) and basic dyes
stain acidophilic material (nucleus) however this far from being complete truth,
Indeed hematoxylin, which is an acid dye, does not stain the cytoplasm, but (in
the presence of mordant) is one of the most widely used nuclear stains.
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directly after staining for sections which cannot be subjected to dehydrating and
clearing agents. The basic steps in staining and mounting paraffin sections are as
follows:
1. Deparaffinization
Removal of wax is done with xylol. It is essential to remove the wax completely,
otherwise subsequent stages will not be possible. At least 2 to 3changes in xylol
are given for suitable length of time. Sections at this stage should appear clear
and transparent. Presence of any patches indicates the presence of wax and
sections should be kept longer in the xylol.
2. Hydration
Most of the stains used are aqueous or dilute alcoholic solutions. Hence it is
essential to bring the section to water before the stains are applied. The
hydration is done with graded alcohols from higher concentration to lower
concentration. Alcohol and acetone are miscible with xylol. First change is made
to absolute alcohol or acetone followed by 90%, 70% alcohol and finally distilled
water. Sections now should appear opaque. Presence of any clear areas are
indicative of the presence of xylol. To remove this xylol, sections should be
returned to absolute alcohol and rehydrated.
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3. Removal of (mercury formalin) pigments wherever needed
In case mercury containing fixatives e.g. Zenker, Susa etc are used, mercury
pigments are precipitated on the sections. It has to be removed before staining is
done. This is brought about by treatment with iodine solutions which changes
mercury to an iodine compound. This in turn is converted to tetra-thionate by
thio-sulphate, which is readily soluble in water. The slides are placed in running
water to wash out all extraneous chemicals.
4. Staining
Various staining procedures are applied from this hydrated stage. The most
common stain applied for histological study is Haemotoxylin and Eosin. Various
types of haemotoxylin formulations are used. Certain of the stains use strong
chemicals e.g. ammonia. Sections tend to float off the slides in such stains. This
can be prevented by coating the sections by a thin layers of celloidin. For this
sections are returned to absolute alcohol and then dipped in a dilute solution of
celloidin and finally hardened in 70% alcohol. Washing and rinsing of tissue
sections is a necessary part of most staining techniques. It eliminates carrying
over of one dye solution to the next. Excess dye, mordants, or other reagents
might react unfavourably or precipitate when placed in the fluid employed in the
next step.
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acetone are miscible in xylol, it is used for clearing the sections. Any sections from
which water has not been completely removed would give a milky appearance
after the first xylol. Such sections should be returned to absolute alcohol and the
process repeated. Mounting is done after 2nd or 3rd xylol.
Make quite sure that the sections are quite clear. Do not let the section go dry
before mounting.
1. Hold the slide between the thumb and the forefinger of one hand and wipe
with a clean cloth both ends of the slides. Look for the engraved number to make
sure the side the sections is present.
2. Clean carefully around the section and lay on a clean blotting paper with
section uppermost along with appropriate coverslip which has already been
polished.
4. After the mountant has spread to the edge of the coverslip wipe around it for
neatness. If proper care has been taken there should be no air bubbles. If many
are present, slide should be returned to the xylol to remove the coverslip. It will
slip off and remounting is done. No attempt should be made to pull the coverslip.
59
Slight warming of the slide from below will make the small air bubbles to escape
from the slide of the coverslip.
5. Coverslip should be in the center of the slide with neatly written label on one
slide. A good knowledge of various mountants and the coverslips is necessary for
proper selection of the procedure.
Mountants
1. Aqueous media - Used for material which is unstained, stained for fat, or
metachroamtically stained.
1. Aqueous media
There are used for mounting sections from distilled water when the stains would
be decolorised or removed by alcohol and xylene, as would be the case with most
of fat stains (Sudan methods). Some stains, e.g. methyl violent, tend to diffuse
into medium after mounting. This can be avoided by using Highman's medium.
Aqueous mountants require addition of bacteriostatic agents such as phenol,
crystal of thymol or sodium merthiolateto prevent the growth of fungi.
Permanent seal :After mounting the cover slip can be ringed by clear nail polish
for storage.
Following are some of the commonly used aqueous mounting media:
1. Apathy's medium : A very useful medium for mounting sections for fluorescent
microscopy.
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2. Farrant's medium: Recommended for fat stains.
3. Glycerine jelly: An excellent routine mountant for fat stains.
4. Highman’s medium: Recommended with the m61metachromatic dyes
especially methylviolent.
1. Canada balsam - Natural resin: It is used as 60% resin by weight in xylene. H.&E
stained slides are fairly well preserved but basic aniline dyes tend to fade and
Prussian blue is slowly bleached. Slides take few months to dry.
3. There are many other synthetic resins sold under various tradenames e.g.
Coverbond , H.S.R. (Harlew synthetic Resin),Histoclad , Permount , Pro-Texx .
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Cover glasses used in histopathology
Care has to be exercised in selecting cover glasses for mounting, these are
available in variable sizes and thickness and are supplied usually in 10 gm.
packing. Following sizes are commonly available22 x 22 mm 25 x 50mm22 x 30
mm Circular 22 x 40 mm. Cover glass should preferably be the No. 1 thickness
(0.13 - 0.16 mm), but never more than No. 1 ½ thickness (0.16 - 0.19 mm).
Haematoxylin
Blueing
Alum Haematoxylin stains nuclei and red color, which is converted to blue black
color, when the section is washed in weak alkali. Tap water is usually alkaline
enough to produce this color change .
1. 1% Lithium carbonate.
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2. 2% Ammonia (Ammonia Water).
Cytoplasmic stains
• Eosin Phloxine (AFIP)Eosin B 1% and distilled water Eosin Phloxine working Stock
eosin 1% in distilled water - 100mlStock Phloxine 1% in distilled water
10mlAlcohol 95% 780mlAcetic acid 4 mlWorking solution to changed weekly
• Nuclear fast red (Kernechtrot) Aluminium sulphate 5 gm. Distilled water 100 ml
Heat and dissolve and cool nuclear fast red 0.1gmDissolved with the aid of heat,
cool and filter. Add a crystal of thymol.
Nuclear stains
• Hematoxylin
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• Hematoxylin Harris
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• Mayer's HematoxylinHematoxylin
1gm Distilled water 1000ml Heat distilled water to 55 to 60°C and add
hematoxylin rotate till dissolved. Ammonium or potassium alum 50 gm. Sodium
iodate 0.20gm (to be weighed exactly)Add the above in order given Citric acid
1gm. Chloral hydrate 50.0 gm. Above must added in order given. Allow to stand
overnight before use. Solution is stable for 6-8 weeks. Staining time 6-8 minutes
to increase after a month.
2. After the slides are removed from oven these should be cooled before being
put in xylene.
4. Once the slides have been put in the xylene to remove paraffin they should not
be allowed to dry out. Particular care must be taken not to let the sections dry at
the time of mounting as the xylene easily evaporates and if the section dried
before mounting preparation would become useless.
5. Care should be taken that level of any solution used during staining is such as to
cover the slides.
6. Drain the slides well and blot the bottom on filter paper before putting into the
next solution. This is particularly necessary in transferring from 95% to absolute
alcohol and absolute alcohol in xylol.
7. Xylol used to remove paraffin should not get mixed up with the clearing xylol. It
also should be frequently changed as it tends to get saturated.
8. If for blueing an alkali e.g. ammonia has been used, it should be well washed
out. Failure to do that will lead to disagreeably hazy blue colour of nuclei.
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Haematoxylin and Eosin staining Procedure
♦ Hydrate the section. 3 dips in xylene (2 Min. each)ii) 3 dips in acetone / alcohol
(2 Min. each)iii) In running tap water for 5 Minutes.
♦ Mount in DPX
Results
6. Failure to wash blueing agent out of section before counter staining with eosin
(especially when ammonia is used).
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7. Insufficient differentiation of eosin during washing or dehydration.
9. Contamination of stains.
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References
1. Bancroft, J.D. and Stevens, A.: theory and practice of histological techniques
ed.3, Churchill livingstone inc. 1990. Edinburgh. London,Melbourne and New
York.
3. Manual of histologic and special staining techniques ed. 2, New York,1960, The
Blakiston Division McGraw Hill Book Co.
4. Pearse A.G.E.: Histochemistry, ed. 2, Boston 1960, Little Brown andCo.5. H.J.
Conn's Biological Stains (1969) Lille, R.D. 8th edn, Baltimore;Williams and Wilkins.
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