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Numpy NP Sklearn - Cluster Sklearn Sklearn - Datasets Sklearn - Preprocessing

This document performs DBSCAN clustering on sample data containing 3 clusters to identify the optimal number of clusters. It generates sample data of 750 points centered around 3 clusters, standardizes the data, runs DBSCAN with epsilon=0.3 and min_samples=10, and evaluates the clustering results with various metrics. It estimates 3 clusters and 18 noise points, and the clustering has high homogeneity, completeness, V-measure, Adjusted Rand Index, and Adjusted Mutual Information according to the metric evaluations.

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27 views1 page

Numpy NP Sklearn - Cluster Sklearn Sklearn - Datasets Sklearn - Preprocessing

This document performs DBSCAN clustering on sample data containing 3 clusters to identify the optimal number of clusters. It generates sample data of 750 points centered around 3 clusters, standardizes the data, runs DBSCAN with epsilon=0.3 and min_samples=10, and evaluates the clustering results with various metrics. It estimates 3 clusters and 18 noise points, and the clustering has high homogeneity, completeness, V-measure, Adjusted Rand Index, and Adjusted Mutual Information according to the metric evaluations.

Uploaded by

Swappy Boi
Copyright
© © All Rights Reserved
Available Formats
Download as PDF, TXT or read online on Scribd
Download as pdf or txt
Download as pdf or txt
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In [3]: # DATA MINING ASSIGNMENT

# SONIYA NAYAK
# ADMISSION NUMBER - 17JE002726
import numpy as np

from sklearn.cluster import DBSCAN


from sklearn import metrics
from sklearn.datasets import make_blobs
from sklearn.preprocessing import StandardScaler

# #############################################################################
# Generate sample data
centers = [[1, 1], [-1, -1], [1, -1]]
X, labels_true = make_blobs(n_samples=750, centers=centers, cluster_std=0.4,
random_state=0)

X = StandardScaler().fit_transform(X)

# #############################################################################
# Compute DBSCAN
db = DBSCAN(eps=0.3, min_samples=10).fit(X)
core_samples_mask = np.zeros_like(db.labels_, dtype=bool)
core_samples_mask[db.core_sample_indices_] = True
labels = db.labels_

# Number of clusters in labels, ignoring noise if present.


n_clusters_ = len(set(labels)) - (1 if -1 in labels else 0)
n_noise_ = list(labels).count(-1)

print('Estimated number of clusters: %d' % n_clusters_)


print('Estimated number of noise points: %d' % n_noise_)
print("Homogeneity: %0.3f" % metrics.homogeneity_score(labels_true, labels))
print("Completeness: %0.3f" % metrics.completeness_score(labels_true, labels))
print("V-measure: %0.3f" % metrics.v_measure_score(labels_true, labels))
print("Adjusted Rand Index: %0.3f"
% metrics.adjusted_rand_score(labels_true, labels))
print("Adjusted Mutual Information: %0.3f"
% metrics.adjusted_mutual_info_score(labels_true, labels))
print("Silhouette Coefficient: %0.3f"
% metrics.silhouette_score(X, labels))

# #############################################################################
# Plot result
import matplotlib.pyplot as plt

# Black removed and is used for noise instead.


unique_labels = set(labels)
colors = [plt.cm.Spectral(each)
for each in np.linspace(0, 1, len(unique_labels))]
for k, col in zip(unique_labels, colors):
if k == -1:
# Black used for noise.
col = [0, 0, 0, 1]

class_member_mask = (labels == k)

xy = X[class_member_mask & core_samples_mask]


plt.plot(xy[:, 0], xy[:, 1], 'o', markerfacecolor=tuple(col),
markeredgecolor='k', markersize=14)

xy = X[class_member_mask & ~core_samples_mask]


plt.plot(xy[:, 0], xy[:, 1], 'o', markerfacecolor=tuple(col),
markeredgecolor='k', markersize=6)

plt.title('Estimated number of clusters: %d' % n_clusters_)


plt.show()

Estimated number of clusters: 3


Estimated number of noise points: 18
Homogeneity: 0.953
Completeness: 0.883
V-measure: 0.917
Adjusted Rand Index: 0.952
Adjusted Mutual Information: 0.916
Silhouette Coefficient: 0.626

In [ ]:

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