SAASP - Pocket Guide To Antibiotic Prescribing For Adults in SA 2015

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A  POCKET  GUIDE  TO  ANTIBIOTIC  PRESCRIBING    


FOR  ADULTS  IN  SOUTH  AFRICA,  2015  
 
SEAN  WASSERMAN  
TOM  BOYLES  
MARC  MENDELSON  
 
ON  BEHALF  OF  THE  SOUTH  AFRICAN  ANTIBIOTIC  STEWARDSHIP  
PROGRAMME  (SAASP)  
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

 
 
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Contents  
 
Why  do  we  need  this  guide?                5  
Principles  for  rational  antibiotic  prescribing            6  
Interpreting  test  results               11  
Correct  techniques  of  microbiological  sampling       13  
Changing  antibiotics               15  
Infection  prevention               16  
Acute  upper  respiratory  tract  infection         20  
Lower  respiratory  tract  infection           24  
Intra-­‐abdominal  infection               29  
Acute  diarrhoea                   31  
Urinary  tract  infections               35  
Sexually  transmitted  infections             40        
Acute  meningitis                 45  
Peripheral  line  infection               48  
Staphylococcus  aureus  bacteraemia           49          
Skin  and  soft  tissue  infections             51    
Bone  and  joint  infections               56  
Prophylaxis                   59    
                 
                       
             
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
A  pocket  guide  to  antibiotic  prescribing  for  adults  in  South  Africa  2015  
First  published  2014  
©  Sean  Wasserman,  Tom  Boyles,  Marc  Mendelson  
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GLOSSARY  
 
Term   Definition  
Antibiogram   A   list   of   antibiotics   to   which   a   cultured   bacterium   is  
susceptible,  intermediate  or  resistant  
BC   Blood  culture  
BD   Twice  daily  
Beta-­‐lactam  antibiotic   Antibiotic  class  containing  a  beta-­‐lactam  ring  that  inhibits  
bacterial   cell   wall   synthesis.   Includes   penicillins,  
cephalosporins  and  carbapenems  
CA   Community-­‐acquired  
CAP   Community  acquired  pneumonia  
Cleaning  solution   Antiseptic   for   hand   hygiene,   including   0.5%   chlorhexidine  
in  70%  alcohol  and  iodine-­‐based  solutions  
Community-­‐acquired  (CA)  infection   Illness  starts  prior  to,  or  within  48  hours  of  admission    
CRB-­‐65  score   A   clinical   prediction   rule   for   mortality   in   community-­‐
acquired   pneumonia.   The   score   is   an   acronym   for  
individual  risk  factors  as  follows:    
Confusion  of  new  onset  
Respiratory  rate  ≥  30  breaths  per  minute  
Blood  pressure  <  90  mmHg  systolic  or  <  60  diastolic  
65  years  or  older  
 
A  single  point  is  assigned  to  each  risk  factor.  
CRE   Carbapenem  resistant  Enterobacteriaceae  
CXR   Chest  X-­‐ray  
eGFR   Estimated  glomerular  filtration  rate  
ESBL   Extended  spectrum  beta  lactamase  producing  organism  
Health  care  associated  infection  (HCAI)   Any  patient  with  a  new  infection  starting  ≥  48  hours  after  
admission  and  was  not  apparent  at  the  time  of  admission,  
or  any  catheter  or  line-­‐associated  infection  irrespective  of  
time  of  insertion.    
The  following  factors  increase  risk:  
• Admission   to   an   acute   care   hospital   within   90   days   of  
the  current  presentation  
• Resident  of  a  nursing  home  or  long-­‐term  care  facility  
• Recent  intravenous  antibiotic  therapy,  chemotherapy  or  
wound   care   within   the   past   30   days   of   the   current  
presentation  
• Patients  attending  a  haemodialysis  clinic  
HCAP   Health  care  associated  pneumonia  
IPC   Infection  prevention  and  control  
im   Intramuscular  injection  
iv   Intravenous  
MRSA   Methicillin  resistant  Staphylococcus  aureus  
MSSA   Methicillin  sensitive  Staphylococcus  aureus  
po   Per  os  (oral)  
Rx   Treatment/therapy  
TOE   Trans-­‐oesophageal  echocardiogram  
TTE   Trans-­‐thoracic  echocardiogram  
VRE   Vancomycin  resistant  enterococci  
 

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Disclaimer  
This  document  is  provided  as  an  information  resource  for  all  health  care  workers  to  
assist  in  the  appropriate  prescribing  of  antibiotics.  It  attempts  to  summarise  relevant  
information  for  clinicians  from  South  African  and  International  guidelines  as  well  as  
reference  to  textbooks,  key  publications  and  expert  opinion.  
 
Recommendations  change  rapidly  and  opinion  can  be  controversial.  The  authors  do  
not   warrant   that   the   information   contained   in   this   booklet   is   complete   and   shall   not  
be  liable  for  any  damages  incurred  as  a  result  of  its  use.  
 
 
Acknowledgements  
We  would  like  to  acknowledge  the  following  colleagues  who  provided  input  during  
the  editing  phase  of  this  book:  
 
Dr  Adrian  Brink,  Prof  Alan  Karstaedt,  Prof  Andrew  Whitelaw,  Prof  Andries  Gous,  Ms  
Andriette  van  Jaarsveld,  Prof  Andy  Parish,  Dr  Cloete  van  Vuuren,  Dr  Colleen  
Bamford,  Dr  Dena  van  den  Bergh,  Prof  Guy  Richards,  Prof  Gary  Maartens,  Dr  Ivan  
Joubert,  Dr  James  Nuttall,  Sr  Lesley  Devenish,  Prof  Olga  Perovic.  
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

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Chapter  1  
Why  do  we  need  this  guide?  
 
The  international  community  sits  at  the  tipping  point  of  a  post-­‐antibiotic  era,  where  
common   bacterial   infections   are   no   longer   treatable   with   the   antibiotic  
armamentarium  that  exists.  In  South  Africa,  the  identification  of  the  first  case  of  pan-­‐
resistant   Klebsiella   pneumoniae   (Brink   et   al,   J   Clin   Microbiol.   2013;51(1):369-­‐72)  
marks   a   watershed   moment   and   highlights   our   tip   of   the   antibiotic   resistance  
‘iceberg’   in   this   country.   Multi-­‐drug   resistant   (MDR)-­‐bacterial   infections,  
predominantly   in   Gram-­‐negative   bacteria   such   as   Klebsiella   pneumoniae,   Escherichia  
coli,  Pseudomonas  aeruginosa  and  Acinetobacter  baumannii  are  now  commonplace  
in  South  African  hospitals.  Whilst  a  number  of  expensive  new  antibiotics  for  Gram-­‐
positive   bacterial   infections   have   been   manufactured   recently   (some   of   which   are  
licenced   for   use   in   South   Africa),   no   new   antibiotics   active   against   Gram-­‐negative  
infections   are   expected   in   the   next   10-­‐15   years.   Hence   what   we   have   now,   needs  
conserving.  
   
The  development  of  antibiotic  resistance  is  a  natural  phenomenon.  Drug-­‐resistance  
mutations  have  been  found  in  30,000-­‐year  old  ice  blocks.  In  addition,  bacteria  may  
acquire  antibiotic  resistance  mechanisms  by  horizontal  gene  transfer.  There  are  over  
1000  different  naturally  occurring  enzymes  that  are  produced  by  different  bacteria,  
which   inactivate   antibiotics.   The   overuse   of   antibiotics   is   driving   the   selection   of  
antibiotic   resistance.   Given   the   right   circumstances,   the   resistant   bacteria   that   are  
selected  out  can  either  colonize  a  patient  (be  present,  potentially  transmissible,  but  
not  cause  clinical  disease  i.e.  infection)  or  cause  infection.  It  follows  that  the  more  
antibiotics  are  used,  the  greater  the  likelihood  of  selecting  out  antibiotic  resistance,  
and  the  broader  the  spectrum  of  antibiotic  that  is  used,  the  greater  the  number  of  
different   types   of   resistant   bacteria   will   be   selected   out.   The   fact   that   it   is   estimated  
that  half  of  all  antibiotics  prescribed  in  human  health  are  unnecessary  e.g.  for  viral  
upper  respiratory  tract  infections,  demands  our  renewed  efforts  to  make  antibiotic  
prescribing  appropriate.  When  it  is  indicated,  an  antibiotic  must  be  the  right  choice  
at  the  right  dose,  dosing  interval  and  route,  and  for  the  right  duration,  and  when  it  is  
not  indicated,  that  antibiotic  must  not  prescribed.  
   
Rather   than   be   an   exhaustive   text   on   infectious   diseases,   microbiology   or   clinical  
pharmacology,  the  aim  of  this  guide  is  to  give  you  the  practical  information  you  need  
to  perform  antibiotic  stewardship  in  an  algorithmic  manner,  which  mimics  the  day-­‐
to-­‐day  experience  of  the  prescriber.  
 

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Chapter  2  
Principles  for  rational  antibiotic  prescribing  
 
1. Decide  if  an  antibiotic  is  indicated:  does  the  patient  have  a  bacterial  
infection?  

 
Targeted  refers  to  specimen  from  site  of  infection  e.g.  urine  for  cystitis    
 
2. Perform   cultures   before   administering   antibiotics   in   hospitalised  
patients  or  in  outpatients  with  recurrent  infections  

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This   allows   de-­‐escalation   to   a   narrow   spectrum   antibiotic   once   the  


antibiogram  is  available  &  is  a  cornerstone  of  antibiotic  stewardship  
 
3. Choose  an  appropriate  empiric  antibiotic:  
a. Target  the  most  likely  pathogen(s)  for  the  site  of  infection  
This   can   be   predicted   by   understanding   the   broad   groups   of   pathogens  
that  most  commonly  cause  infections  at  various  sites:  
– Skin  and  soft  tissue:  Gram  positive  cocci  
– Urinary  tract:  Gram  negative  bacilli  
– Intra-­‐abdominal:   Gram-­‐negative,   Gram-­‐positive   and   anaerobic  
organisms  
– See  chapters  on  specific  infections  for  more  details    
An   appropriate   empiric   antibiotic   can   then   be   selected   by   matching   the  
narrowest   spectrum   antibiotic   with   the   likely   pathogens.   Spectrums   of  
activity  of  commonly  used  antibiotics  are  shown  below  
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

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  Gram  positive  cocci  


Clusters   Pairs/chains  
MSSA   MRSA   S.  pneumoniae   E.  faecalis   E.  faecium   VRE  
Most  other  
streptococci  
Amoxicillin/ampicillin   -­‐   -­‐   +   +   -­‐   -­‐  
Cloxacillin   +   -­‐   +/-­‐   -­‐   -­‐   -­‐  
Clindamycin   +   +/-­‐   +   -­‐   -­‐   -­‐  
Ceftriaxone   +   -­‐   +   -­‐   -­‐   -­‐  
Co-­‐amoxiclav   +   -­‐   +   /   -­‐   -­‐  
Vancomycin   /   +   /   /   +   -­‐  
Ertapenem   /   -­‐   /   -­‐   -­‐   -­‐  
Moxifloxacin   /   +/-­‐   +   /   +/-­‐   -­‐  
Linezolid   /   /   /   /   /   +  
Daptomycin   /   /   /   /   /   /  
 
  Gram  negative  
Bacilli   Cocci  
E.  coli   Enterobacter   ESBL   CRE   Salmonella   Pseudomonas   Neisseria  
Klebsiella     spp.   spp.   spp.   meningitidis  
spp.  
Amoxicillin/ampicillin   -­‐   -­‐   -­‐   -­‐   /   -­‐   +/-­‐  
Penicillin   -­‐   -­‐   -­‐   -­‐   /   -­‐   +/-­‐  
Cotrimoxazole*   +/-­‐   +/-­‐   +/-­‐   -­‐   +/-­‐   -­‐   -­‐  
Ceftriaxone   +   -­‐   -­‐   -­‐   +   -­‐   +  
Co-­‐amoxiclav   +   -­‐   -­‐   -­‐   /   -­‐   /  
Ciprofloxacin   +   +   +/-­‐   +/-­‐   +   +   /  
Aminoglycosides   +   +   +/-­‐   +/-­‐   -­‐   +   -­‐  
Cefepime   /   +   -­‐   -­‐   /   +   /  
Piptazobactam   /   +/-­‐   -­‐   -­‐   /   +   /  
Ertapenem   /   +   +   -­‐   /   -­‐   /  
Imipenem   /   /   /   +/-­‐   /   +   /  
Meropenem   /   /   /   +/-­‐   /   +   /  
*Associated   with   much   higher   rates   of   toxicity   than   other   antibiotics.   Avoid   using   if   a   suitable  
alternative  with  a  similarly  narrow  spectrum  of  activity  is  available  
 
+   usually  susceptible:  recommended  first  line  therapy  while  awaiting  antibiogram  
-­‐   frequent  resistance  or  poor  clinical  efficacy:  do  not  use  
+/-­‐   variable  susceptibility:  only  use  with  antibiogram  result  
/   usually  susceptible  but  not  first  choice:  do  not  use  unless  there  is  a  compelling  reason  (e.g.  
allergy,  toxicity  or  resistance  to  first  line  drug  or  better  outcomes  for  a  particular  site  of  infection)  
 
b. Assess  likelihood  of  antibiotic  resistance  
Risk  factors  include  known  colonisation  with  a  resistant  pathogen,  HCAI,  
recent  antibiotic  exposure.  Local  resistance  patterns  inform  prescribing.  
 
c. Review  potential  contraindications  
Allergy:  
Clinicians   should   differentiate   an   immediate   type   1   IgE   mediated  
hypersensitivity   reaction   from   other   less   dangerous   types   of  
hypersensitivity.   Classical   signs   of   type   1   hypersensitivity   are   anaphylaxis,  
angioedema,   urticarial   rash,   and   bronchospasm.   If   a   type   I  

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hypersensitivity   reaction   to   penicillin   has   occurred,   then   all   β-­‐lactam  


antibiotics  should  be  avoided,  unless  there  is  no  alternative  drug  available  
when  penicillin  desensitisation  can  be  attempted  as  an  inpatient.  
Patients   with   other   types   of   hypersensitivity   reactions,   usually   a  
maculopapular   rash   to   amoxicillin,   should   avoid   all   penicillins   but   may  
tolerate  other  β-­‐lactam  antibiotics  like  cephalosporins.  The  1st  generation  
cephalosporins   should   be   avoided   as   they   have   a   higher   risk   of   cross-­‐
reactivity  with  penicillin,  but  this  risk  is  much  lower  for  second-­‐  or  third-­‐
generation  cephalosporins  reported  to  be  only  0.1%.  
If   the   previous   reaction   to   penicillin   was   a   maculopapular   rash,   it   is  
relatively   safe   to   use   2nd/3rd   generation   cephalosporins   and   use   would  
depend   on   the   patient’s   social   circumstances   and   access   to   follow-­‐up.  
However,   in   patients   with   a   remote   history   of   a   rash   on   penicillin   it   is  
often   difficult   to   differentiate   a   maculopapular   rash   from   an   urticarial  
rash  –  all  β-­‐lactam  antibiotics  should  be  avoided  if  urticaria  occurred  on  
penicillins  as  this  is  a  type  1  reaction.    In  this  setting,  skin  testing  before  
using  a  cephalosporin  is  recommended,  as  a  positive  reaction  to  penicillin  
indicates  type  1  hypersensitivity.  
 
Toxicity:  
Antibiotics   can   cause   direct   dose-­‐dependent   toxicity   and   should   be  
avoided   in   patients   at   high   risk   of   developing   organ   damage   with   a  
specific  agent.  For  example,  do  not  use  aminoglycosides  in  patients  with  
renal  impairment  or  hearing  loss.  
 
d. Choose  drug  with  adequate  target  tissue  penetration  
  CSF   Lung   Soft  tissue   Urinary  tract  
Ampicillin   Good  (in  high  doses)   Good   Good   Good  
Cloxacillin   Inadequate  data   Fair   Good   No  data  
Clindamycin   Poor   No  data   Good   No  data  
Co-­‐amoxiclav   Poor   Good   Good   Fair  
Ceftriaxone   Good  (in  high  doses)   Good   Good   Good  
Aminoglycosides   Poor   Poor   Fair   Good  (if  normal  GFR)  
Ciprofloxacin   Good  (in  high  doses)   Good   Good   Good  
Co-­‐trimoxazole   Good   Good   Good   Good  
Ertapenem   Poor   Good   Good   Good  
Meropenem   Good  (in  high  doses)   Good   Good   Good  
Imipenem   Good*   Good   Good   Good  
Vancomycin   Poor     Fair   Poor     Good  
Linezolid   Good   Good   Good   Good  
Daptomycin   Poor   Poor   Good   Good  
  *Associated  with  higher  risk  of  seizures  
 
e. Aim  for  a  single  drug  with  the  desired  spectrum  of  activity  
Monotherapy   is   preferred   unless   combination   therapy   is   required   for  
synergy   (e.g.   endocarditis)   or   extended   spectrum   beyond   what   can   be  
obtained  with  a  single  drug  (e.g.  atypical  pathogens  in  severe  CAP).  
 

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4. Ensure  correct  dose  and  route  of  administration  


The   oral/enteral   route   is   preferred   whenever   possible   for   patients  
with   mild   to   moderate   infections.   Intravenous   antibiotics   should   be  
reserved   for   severe   infection   or   for   certain   sites   such   as   the   CSF,  
bacteraemia,  endocarditis,  bone  and  joint  infections.    
  Oral  absorption  (%)   Comments  
Penicillin  VK   Moderate     Take  without  food  
Amoxicillin   Good    
Flucloxacillin   Good     Take  on  empty  stomach  
Clindamycin   Good    
Co-­‐amoxiclav   Good    
Ciprofloxacin   Good     Do  not  give  via  NGT  or  with  antacids  
Doxycycline   Excellent   Take  with  food,  do  not  co-­‐administer  with  antacids  
Azithromycin   Poor     Take  without  food  
Metronidazole   Excellent    
Co-­‐trimoxazole   Good    
Linezolid   Excellent    

 
5. Start  the  appropriate  antibiotic  rapidly  in  severe  infections  
Mortality  increases  by  8%  for  every  hour  antibiotic  administration  is  delayed  in  
septic  shock1  
 
6. Practice  early  and  effective  source  control  
Search  for  and  remove  any  persistent  foci  of  infection  
 
7. Evaluate  antibiotic  appropriateness  every  day  

                                                                                                           
1
 Kumar  et  al.  Crit  Care  Med.  2006  Jun;34(6):1589-­‐96.  

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Chapter  3  
Interpreting  test  results  
 
Non  culture-­‐based  tests  
Non  culture-­‐based  tests  such  as  urinary  dipstick,  peripheral  white  cell  count  (WCC),  
and   C-­‐reactive   protein   (CRP)   confirm   the   presence   of   inflammation   when   positive  
but   do   not   differentiate   bacterial   from   non-­‐bacterial   causes.   However,   presence   of  
nitrites  on  urine  dipstick,  high  neutrophil  count  with  left-­‐shift  and  CRP  >100  mg/ml  
all   suggest   bacterial   infection.   Negative   results   are   generally   good   at   excluding  
inflammation  and  therefore  bacterial  infection.  
 
Procalcitonin   (PCT)   is   more   specific   for   bacterial   infection   than   CRP   or   WCC   but   10  
times  more  expensive.  There  is  high  quality  evidence  for  its  use  in  a  limited  number  
of  infections  and  its  use  should  be  limited  to  these  indications.  Specifically,  low  PCT  
safely  excludes  bacterial  infection  such  that  antibiotics  can  be  withheld  in  meningitis,  
and  acute  exacerbations  of  chronic  obstructive  pulmonary  disease  (see  later  sections  
for  details).  PCT  has  no  value  in  differentiating  bacterial  infection  from  tuberculosis  
and   has   very   limited   value   in   sepsis.   Its   price   generally   excludes   its   use   in   serial  
measurement   to   determine   when   to   stop,   although   some   evidence   in   ICU   settings  
alone,  exist.  
 
Cultures  
 
Does  this  positive  culture  represent  infection,  colonisation  or  contamination?  
 
Infection   =   the   presence   of   one   or   more   microorganisms   with   an   inflammatory  
response  
 
Colonisation  =  the  presence  of  microorganisms  without  significant  inflammation.    
 
Contamination   =   A   culture   that   contains   a   microorganism(s)   that   did   not   originate  
from  the  intended  anatomical  site  
 
Sterile  sites  
Normally   sterile   sites   are   CSF,   lungs   (below   the   glottis),   urinary   tract,   biliary   tract,  
and   blood.   Bacteria   cultured   from   these   sites   are   likely   to   be   causing   infection   but  
still  sometimes  represent  colonisation  or  contamination.      
 
Finding   bacteria   in   a   sterile   site   is   abnormal   but   may   represent   infection,   or  
contamination.  Organisms  colonizing  skin  such  as  coagulase-­‐negative  staphylococci  
may   cause   contamination   of   sterile   sites.   Colonisation   of   urinary   tract   can   occur  
without   causing   infection.   If   the   organism   corresponds   with   the   clinical   scenario  
then  this  should  be  considered  to  be  causing  infection  
 
 

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Non-­‐sterile  sites  
Non-­‐sterile   specimens   include   sputum   (as   it   must   pass   through   the   mouth),   pus  
swabs   from   skin,   GI   tract   and   vagina.   Specimens   from   these   sites   are   expected   to  
culture   bacteria  (unless  growth  is  inhibited  by  laboratory  techniques).  Interpretation  
therefore  depends  on  the  organism(s)  being  compatible  with  the  clinical  scenario.  
 
Cultures   from   non-­‐sterile   sites   are   often   much   harder   to   interpret   and   usually   of  
less  value.  
 

 
 
 
 
 
 

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Chapter  4  
Correct  techniques  of  microbiological  sampling  
 
Optimal  sampling  is  very  important  to  increase  yields  and  decrease  contamination  
rates   (see   boxes   below).   Surgical   specimens   from   abnormal   structures   such   as  
abscesses  should  usually  be  collected  at  the  time  of  operation.  Once  surgical  drains  
are  placed  they  quickly  become  colonised  with  skin  and  environmental  bacteria  and  
culture   results   are   not   interpretable.   Pus   swabs   collected   outside   of   theatre   are  
discouraged,   as   it   is   extremely   rare   for   them   to   yield   information   that   will   change  
patient  management.  
 
Box  1.  Correct  technique  for  collecting  mid-­‐stream  urine  specimens  
Instructions  for  collection  of  urine  specimens    
Females  
• Wash  your  hands    
• Clean  the  vulva  front  to  back  with  sterile  gauze  and  sterile  water  
• Spread  labia  with  fingers  
• Void  and  collect  urine  mid-­‐flow  
 
Males  
• Wash  your  hands    
• Retract  foreskin  and  wash  glans  with  sterile  gauze  and  sterile  water  
• Void  and  collect  urine  mid-­‐flow  
 
 
Box  2.  Correct  technique  for  collecting  urine  specimens  from  a  catheter    
   
  • Use  aseptic  technique  with  sterile  gloves  
  and  apron  
  • Clamp  tubing  just  distal  to  sampling  port  
  • Wait  for  urine  to  collect  above  clamp  
  • Wipe  sampling  port  with  cleaning  
  solution  
  • Remove  urine  with  a  small  gauge  sterile  
  needle  and  syringe  
Transfer  ufrine  
Box  3•  –  Technique   to  sterile  
or  taking   container  
a  pus   swab  
  • Clean   p ort   a gain  
  • Unclamp  tubing  
 
 
 
 
 
 
 

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Box  3.  Correct  technique  for  performing  a  pus  swab  


  1. Wounds  with  slough,  necrotic  tissue,  or  dried  exudate  should  first  be  debrided  
  2. Wash  the  wound  with  sterile  saline  
  3. If  the  wound  is  dry  moisten  the  tip  of  the  swab  with  sterile  saline  
 
4. Move  swab  tip  across  the  wound  surface  in  a  zig-­‐zag  motion  at  the  same  time  as  
 
being  rotated  between  the  fingers  
 
5. Apply  gentle  pressure  to  release  fluid  from  the  base  of  the  wound  
 
6. Aim  to  include  as  much  of  the  area  of  the  wound  as  possible  but  avoid  intact  skin  
 
  around  the  wound  
  7. Document  clinical  information  on  laboratory  request  form  
  8. Transfer  to  laboratory  as  soon  as  possible  
 
 
Box  4.  Correct  technique  for  performing  a  blood  culture  
  1. Verify  the  patient’s  identity  and  obtain  verbal  consent.  
  2. Assemble  the  correct  materials  required  for  blood  culture:  
• blood  culture  bottle(s)  
• syringe  (10  ml  or  more)    
• needle  (22  gauge  or  more)  
• sterile  gloves  
• tourniquet  
• adhesive  strip  
• Cleaning  solution*  
• sterile  pack  containing  cotton/gauze  swabs,  sterile  paper  x2  and  waste  bag  
• patient  labels  
• sharps  waste  disposal  bin  
3. Apply  tourniquet  and  select  a  suitable  vein    
4. Wash  hands  and  apply  sterile  gloves  
5. Clean  the  puncture  site  with  cleaning  solution  using  aseptic  technique  and  allow  30  
seconds  for  the  disinfectant  to  dry  
6. Place  green  sterile  cover  with  opening  over  site  for  blood  culture  
7. Collect  10ml  of  blood  per  bottle  from  adults    
8. Release  tourniquet  and  remove  needle  
9. If  not  using  the  vacutainer  system,  disinfect  the  top  of  the  blood  culture  bottle  before  
inoculating  blood  
10. Do  not  change  needles  between  blood  sample  collection  and  inoculation  of  blood  
culture  bottle  
11. Always  fill  blood  culture  bottle  before  filling  vials  for  other  tests    
12. Label  the  blood  culture  bottle  making  sure  not  to  cover  the  bar  code  label  or  the  
bottom  of  the  bottle    
13. Complete  a  laboratory  request  form  in  full      
14. If  there  is  a  delay  in  getting  the  sample  to  the  laboratory,  do  not  refrigerate  the  
bottle;  rather  leave  it  at  room  temperature  
15. Document  in  the  notes,  the  date  and  time  that  the  blood  culture  was  taken  
 
*Chlorhexidine-­‐alcohol  is  recommended,  but  if  using  povidone  iodine,  it  must  be  left  to  dry  
for  at  least  1  minute  prior  to  performing  culture  
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Chapter  5  
Changing  Antibiotics  
 
Once  antibiotics  have  been  initiated  the  decision  to  change  or  stop  therapy  depends  
on  the  patient’s  clinical  response  and  culture  results  (see  algorithm).    
 

 
 
Abx    =  Antibiotics,  BSA  =  Broad  spectrum  antibiotics    

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Chapter  6  
Infection  prevention  
 
The   most   important   tools   to   prevent   spread   of   infection   are   hand   hygiene   and  
contact   precautions.   Correct   management   of   IV   lines   and   urinary   catheters   are  
essential  for  reducing  hospital-­‐acquired  infections.  
 
Hand  hygiene  
WHEN:  
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
HOW:  
Use  alcohol-­‐based  solutions  for  routine  hand  decontamination.  
 
  Indications  for  soap  and  water:  
  • Hands  visibly  dirty  
• Hands  contaminated  with  body  
 
fluids    
  • After  using  the  restroom  or  eating  
  • Exposure  Clostridium  difficile  
 
  Indications  for  gloves:  
  • Patient  interactions  that  involve  
  exposure  to  blood,  mucous  
  membranes  or  non-­‐intact  skin  
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• Suspected  or  proven  C.  difficile  
  Always  wash  hands  after  glove  use  
 

Contact  precautions  
 

 
 
These  should  be  implemented  for  any  patient  infected  by  or  colonised  with  a  drug-­‐
resistant   bacterial   pathogen   other   than   tuberculosis   (which   requires   airborne  
precautions   to   prevent   small   droplet   spread).   Contact   precautions   involve   the  
following:  
1. Clear  signage  indicating  that  contact  precautions  are  in  place  
2. Patient  preferably  placed  in  isolation  
3. Hand  disinfection  prior  to  patient  contact  
4. Mandatory   use   of   apron   and   gloves   when   entering   the   patient’s   room,   before  
any  contact  with  the  patient  or  their  surroundings  and  during  examination  
5. Remove  apron  first,  followed  by  gloves  
6. Hand  disinfection  after  disposal  of  apron  and  gloves  (use  soap  and  water  for  C.  
difficile  exposure)  
7. Contact  precautions  remain  in  place  even  after  treatment  with  antibiotics  and  for  
every  hospital  or  nursing  care  re-­‐admission  for  a  period  of  6  months.  For  patients  
with   C.   difficile   associated   diarrhoea   contact   precautions   can   be   withdrawn   after  
completion  of  treatment  and  resolution  of  diarrhoea.  
 
 
 
 
 
 
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Management  of  peripheral  IV  lines  

 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

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Management  of  urinary  catheters  

 
 
Every  time  you  see  a  patient  you  should  be  asking  the  
questions:  
1. Can  I  stop  or  de-­‐escalate  antibiotics?  
2. Can  I  remove  this  urinary  catheter?  
3. Can  I  remove  this  IV  line?  
 
 

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Chapter  7  
Acute  Upper  Respiratory  Tract  Infection    
 
Over-­‐prescribing  of  antibiotics  for  upper  respiratory  tract  infection  (URTI)  is  a  major  
driver   of   bacterial   resistance   in   the   community.   URTI   comprises   three   clinical  
syndromes  depending  on  the  site  of  infection;  pharyngotonsillitis  (sore  throat),  acute  
otitis  media,  and  acute  bacterial  sinusitis.    
 
Acute  pharyngotonsillitis  (sore  throat)  
 

 
Typical  appearance  of  viral  pharyngitis  
 

 
Typical  appearance  of  bacterial  pharyngitis  
 
Definition  
• Acute  inflammation  of  the  pharyngeal  wall  and  tonsils.  
 

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Likely  pathogens  
• Commonly   respiratory   viruses   and   Epstein-­‐Barr   virus.   Around   5-­‐30%   caused  
by  group  A  β-­‐haemolytic  streptococci  (GABHS)  (S.  pyogenes).    
• Viral  and  bacterial  acute  pharyngitis  are  self-­‐limiting,  including  those  caused  
by  GABHS,  hence,  the  primary  reason  for  considering  antibiotic  therapy  is  to  
prevent  Acute  Rheumatic  Fever  (ARF)  
 
Clinical  features  
• Sore  throat  
• It  is  possible  to  differentiate  bacterial  from  viral  causes  on  clinical  grounds.  

 
Penicillin  allergy  
Azithromycin  500  mg  po  daily  for  3  days  
 
Acute  otitis  media  
 
Definition  
Acute  inflammation  of  the  middle  ear  
 

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Typical  appearance  of  acute  otitis  media  
 
Likely  pathogens  
• Haemophilus  influenza,  Streptococcus  pneumoniae,  Moraxella  catarrhalis  
 
Clinical  features  
• Ear  pain  and  decreased  hearing  
• Reddened  and  bulging  tympanic  membrane,  which  may  be  draining  pus.    
 
Tests    
• None  required  
 
Treatments  
• Initially  analgesics  and  decongestants  only  
• Antibiotics  if  febrile  or  symptoms  do  not  settle  within  48  hrs    
 
First  line  
  Amoxicillin  1g  po  8-­‐hourly  for  5  days  
Alternative  in  beta-­‐lactam  allergic  patients  
  Azithromycin  500  mg  po  daily  for  3  days  
 
Acute  bacterial  sinusitis  

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Definition-­‐  Acute  bacterial  infection  of  para-­‐nasal  sinuses  
 
Likely   pathogens-­‐   Haemophilus   influenzae,   Streptococcus   pneumoniae,   Moraxella  
catarrhalis  
 
Clinical  features  
• Often  preceded  by  a  viral  URTI  
• Fever,   facial   tenderness,   dental   tenderness,   nasal   discharge,   nasal  
congestion  and  anosmia.    
 
Tests  
• Usually  none  
• If   failure   of   initial   therapy   a   CT   scan,   fibre-­‐optic   endoscopy   with   aspiration  
and  culture  of  pus  may  be  necessary  
 
Treatments  
• Symptomatic  treatment:  paracetamol,  decongestant,  nasal  steroids  perform  
better  than  antibiotics  
• Antibiotics  should  be  prescribed  if  any  of  the  following  are  present-­‐  
o Symptoms  lasting  >  10  days  
o Fever  >39oC  
o Purulent  discharge  
o Facial  pain  
o Biphasic  illness  with  sinusitis  following  typical  viral  URTI  
 
First  line  
  Amoxicillin  1g  8  hourly  for  5  days  po  
Alternative  for  beta-­‐lactam  allergy  
Azithromycin  500  mg  po  daily  for  3  days  

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Chapter  8  
Lower  Respiratory  Tract  Infection  
 
Acute  bronchitis  
Definition  
Self-­‐limited  inflammatory  process  involving  large  and  mid-­‐sized  airways  
 
Common  aetiologies  
• Respiratory  viruses  (>  90%)  
– Influenza  
– Parainfluenza  3  
– Respiratory  syncytial  virus  
– Human  metapneumovirus  
• Non-­‐viral  (<10%)  
– Suspect  if  prolonged  cough,  longer  incubation  period,  local  outbreaks  
§ Mycoplasma  pneumoniae  
§ Chlamydia  pneumoniae  
§ Bordetella  pertussis  
– No   association   with   S.   pneumoniae   or   H.   influenzae   in   patients  
without  evidence  of  underlying  lung  disease  
 
Tests  
No  investigations  are  required  in  the  vast  majority  of  cases:  
• Gram  stain  not  recommended  
• Nasopharyngeal  swab  for  influenza  PCR  not  recommended  for  uncomplicated  
influenza-­‐like  illness  
 
Diagnosis  and  management  

 
*Chest  X-­‐rays  are  not  necessarily  indicated  for  all  patients  with  acute  bronchitis  and  
should  be  performed  only  if  likely  to  influence  management  
 

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Acute  Exacerbation  of  COPD  (AECOPD)  


 
Definition  
Acute   increase   in   baseline   dyspnoea,   cough   and/or   sputum   above   the   normal   day-­‐
to-­‐day  variations,  requiring  a  change  in  medication.  Up  to  80%  of  AECOPD  have  an  
infectious  aetiology.  
 
Common  aetiologies  
• Viral  (up  to  50%)  –  more  common  in  winter  months  
– Rhinoviruses  
– Parainfluenza  
– Coronavirus            
– Influenza  (in  non-­‐vaccinated)  
– RSV  
• Bacterial    
– H.  influenzae  
– S.  pneumoniae  
– M.  catarrhalis  
– Enterobacteriaceae  (frequent  hospitalisation  and  antibiotic  use)      
• Atypical  bacteria  are  not  implicated  in  AECOPD  
 
Tests  
 
Moderate   Severe  
Mild   (Requiring  hospitalisation)   (Requiring  high  
care/ICU)  
– Sputum  culture  not   – Sputum  culture  if   – Sputum  culture  
routine   frequent  admissions  or   – Blood  culture  if  
– CRP  or  PCT  (if  available)   poor  response  to   pyrexial  
o Withhold   antibiotics   – Nasopharyngeal  
antibiotics  if   – CRP  or  PCT  (if  available)   swab  for  influenza  
negative   o Withhold   PCR  if  in  flu  season  
antibiotics  if  
negative  
 
 
 
 
 
 
 
 
 
 
 

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Diagnosis  and  management  

Prevention  
• Annual  influenza  vaccine  recommended  for  all  patients  with  COPD  
• Pneumococcal   polysaccharide   (PPSV23)   vaccine   is   recommended   for   all  
individuals  over  65  years  of  age  and  anyone  with  COPD  
• Antiviral  chemoprophylaxis  is  not  recommended  
 
Pneumonia  
 
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Definition  
Pneumonia   is   acute   infection   of   lung   parenchyma   distal   to   the   terminal   bronchiole  
and  causes  consolidation.  
 
Common  aetiologies  of  community  acquired  or  health  care  associated  pneumonia    
CAP   HCAP  
Agent   Comments   Increased  risk  for  infection  with  
S.  pneumoniae   Most  common  cause     MDR  pathogens  
H.  influenzae   More  common  in  COPD    
Tuberculosis   More  common  in  HIV   – Similar  organisms  to  CAP  
‘Atypical  organisms’   Not  cultured   o Uncommonly  
– M.  pneumoniae   No  specific  clinical/   legionella  or  viruses  
– Chlamydophilia   radiological  features   – Gram  negative  bacilli  
– Legionella  spp.   Suspect  if  risk  factors  or   o P.  aeruginosa  
non-­‐response  to  beta-­‐ o A.  baumanii  
lactams   o Enterobacteriaciae  
Oral  anaerobes   Risk  factors:  alcoholism,   – S.   a ureus   (including  MRSA)  
aspiration,  lung  abscess  
P.  jirovecii   HIV,  bilateral  infiltrates,  
desaturation  on  minimal  
exertion,  poor  response  
to  beta-­‐lactams  
Respiratory  viruses   Seasonal  
Risk  factors:  pregnancy,  
elderly,  co-­‐morbidities  
 
Tests  
CAP   HCAP  
Only  perform  if  likely  to  influence  empiric   Always  send  specimens  prior  to  
management  decisions   initiation  of  empiric  antibiotics  
   
Mild  (CRB-­‐65  score  ≤  2)   In  all  cases  
• Sputum  culture  and  Xpert  MTB/Rif  if   • Blood  culture  
failed  outpatient  Abx  therapy     • Sputum  Gram  stain  and  
  culture  
Severe  (CRB-­‐65  ≥  3)  or  co-­‐morbidities*    
• Sputum  Gram  stain  and  culture  
• Blood  culture  
• Sputum  for  P.  jirovecii  DFAT  if  HIV  +ve  
• Urine  Legionella  antigen  testing  
• NP  swab  for  influenza  PCR  if  flu  season  
NP  =  Nasopharyngeal,  DFAT  =  direct  fluorescent  antibody  test  
*  Chronic  cardio-­‐pulmonary  disease,  alcoholics,  immune  suppression  (excluding  HIV),  CKD,  cirrhosis  
 
 
Diagnosis  and  management  

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Special  circumstances  

 
2. Health  care  associated  pneumonia  
– Send   blood   and   sputum   cultures   prior   to   initiating   broad   spectrum  
antibiotics  
– Consult   microbiologist   or   infectious   diseases   specialist   about   choice   of  
appropriate  empiric  antibiotic  
 
3. Penicillin  allergy  
– Moxifloxacin   400   mg   po/iv   daily   or   levofloxacin   500mg   po   12-­‐hourly  
(750mg  iv  12-­‐hourly  in  severe  pneumonia)    
 
 
 
 
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Chapter  9  
Intra-­‐abdominal  infection  
 
Definitions  and  causes  
Infections  in  the  abdomen  can  be  divided  into  the  following  main  groups:  
1. Infections  of  the  biliary  system,  including  cholecystitis  and  cholangitis  
2. Infections  of  the  bowel,  including  appendicitis  and  diverticulitis  
3. Intra-­‐abdominal  collections  or  abscesses  
4. Peritonitis,   including   bowel   perforations   and   spontaneous   bacterial  
peritonitis  (SBP)  related  to  liver  disease  
 
Common  aetiologies  
Empiric  antibiotic  therapy  for  community-­‐acquired  intra-­‐abdominal  infections  should  
cover  all  of  the  following  organisms:  
• Enteric  gram-­‐negative  bacilli:  E.  coli,  K.  pneumoniae  
• Anaerobic  organisms  
• Enteric  streptococci  
 
Other   possible   causes   in   health   care-­‐associated   infections   or   severely   ill   patients  
include:  
• Enterococci  
• Candida  
• MRSA  
 
Tests  
Most  cases  will  require  abdominal  imaging  (either  ultrasound  or  CT),  unless  there  is  
a  clear  indication  for  urgent  laparotomy.    
• Blood   culture   is   recommended   for   patients   with   sepsis   syndrome   and  
suspected  intra-­‐abdominal  infection.  
• Culture   of   infected   material   is   generally   not   helpful   but   is   recommended   in  
the  following  situations:  
o HCAI  
o SBP  
o Infections   with   incomplete   source   control   (e.g.   inability   to   clear   liver  
abscess)  
o Re-­‐do  laparotomies  
 
Diagnosis  and  management  
1. Spontaneous  bacterial  peritonitis    
Diagnosis:  
• Ascitic  fluid  aspirate  with  WCC  >  250  cells/mm3  
• Positive   ascitic   fluid   culture   (low   sensitivity;   high   specificity   if   sample   taken  
properly)  
 
Management:  

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• Ceftriaxone  1  g  IV  daily  for  5  days  


• Add  ampicillin  1  g  QID  in  the  following  situations  only:  
– Cholestatic  liver  disease  
– Fulminant  liver  failure  (encephalopathy  with  coma)  
– Not  responding  to  ceftriaxone  after  48  hours  
 
2. Most  other  intra-­‐abdominal  infections  
 

 
 
Alternative  antibiotic  regimens  
• Co-­‐amoxiclav  unavailable:  
o Ampicillin  1  g  iv  6  hourly  PLUS  gentamicin  6  mg/kg/day  PLUS  
metronidazole  500  mg  iv  8-­‐HOURLY  
OR  
o Ceftriaxone  1  g  daily  PLUS  metronidazole  500  mg  8-­‐hourly  
• Severe  Penicillin  allergy:    
o Ciprofloxacin  400  mg  iv  8-­‐hourly  PLUS  metronidazole  500  mg  iv  8-­‐hourly  
 
 
 
 
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Chapter  10  
Acute  diarrhoea  
 
Definition  
Diarrhoea  for  <  2  weeks  duration  
 
Likely  pathogens-­‐    
• Viruses  (norovirus,  rotavirus,  adenoviruses,  astrovirus),    
• Bacteria   (Salmonella,   Campylobacter,   Shigella,   Enterotoxigenic   E.   coli,   C.  
difficile)  and  bacterial  toxins  
• Protozoa  (Cryptosporidium,  Giardia,  Cyclospora,  Entamoeba)  
 
Clinical  features  
• Stool  taking  the  shape  of  its  container  >  3  times  per  day  
• Blood  in  stool  
• Fever    
 
History  
• Food  exposure  
• Illness  among  close  contacts  
• Recent  travel  
• HIV  status  
• Recent  antibiotics  
 
Tests  (see  algorithm)  
The   vast   majority   of   episodes   of   diarrhoea   DO   NOT   require   antibiotics.   Mild   cases  
are   usually   self-­‐limiting   and   require   symptomatic   treatment   only.   Moderate   to  
severe  cases  require  investigation  +/-­‐  hospitalisation.    
 
Diagnosis  and  management  

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Treatments  
• Empiric:  
o Ciprofloxacin   500   mg   po   12-­‐hourly   for   3   days   pending   results   of  
culture  and  sensitivity  
o If  bloody  diarrhoea  add  empiric  metronidazole  500  mg  iv  8-­‐hourly  (or  
400  mg  po  8-­‐hourly)  for  5  days  
• Definitive:    
o Based  on  culture  results  
• Clostridium  difficile  toxin  or  molecular  test  positive:  
o See  algorithm  
o Resolution   of   symptoms   generally   occurs   within   5-­‐7   days,   but   it   is   not  
unusual  for  symptoms  to  persist  for  the  first  3-­‐5  days  
o 25%  of  patients  with  C.  difficile  will  relapse  
 
 
 
 
 
 
 
 
 
 
 

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Management  of  C.  difficile  diarrhoea  


 

 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

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Chapter  11  
Urinary  tract  infections  
 
Uncomplicated  UTI  
 
Definition  
‘Uncomplicated’  refers  to  either  a  lower  urinary  tract  infection  or  upper  urinary  tract  
infection   (pyelonephritis)   in   non-­‐pregnant   women   with   structurally   and  
neurologically   normal   genitourinary   tracts.   Acute   uncomplicated   cystitis   is   defined  
as:  
• Symptomatic   bladder   infection   characterised   by   a   clinical   syndrome   of  
frequency,  urgency,  dysuria  or  suprapubic  pain  
 
Common  aetiologies  
 
Pathogens   Common  contaminants  of  urine  cultures  
• Enterobacteriaceae   • Candida  species  
– E.  coli  (most  common)   • Enterococcus  spp.  
– K.  pneumoniae   • Gardnerella  vaginalis  
– Enterobacter  spp.   • Mycoplasma  hominus  
– Proteus  spp.   • Ureaplasma  urealyticum  
• Coagulase  negative  staphylococci    
– S.  saprophyticus  
• Group  B  streptococcus  
• Enterococcus  spp.  
 
Tests  
– Urine  culture  only  for:  
o Reinfection,  persistent  or  recurrent  cystitis  
o Symptoms  with  negative  dipstick  
– Do  not  perform  follow-­‐up  cultures  if  symptoms  have  resolved  
– Do  not  perform  screening  cultures  in  asymptomatic  diabetics,  elderly  or  patients  
with  indwelling  urinary  catheters  
 
 
Diagnosis  and  management  
The   diagnosis   of   urinary   tract   infection   requires   the   presence   of   compatible  
symptoms   plus   bacteriuria   (bacteria   in   the   urine)   or   indirect   evidence   of   infection,  
such  as:  
• Urine  dipstick  leucocyte  esterase  or  nitrite  positive  
• Urine  microscopy  showing  >  1+  leucocytes  
Asymptomatic  bacteriuria  (a  positive  urine  culture  from  patients  without  symptoms  
referable   to   the   urinary   tract)   should   not   be   treated,   except   in   pregnant   women   and  
prior  to  invasive  urological  procedures.  

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Pyelonephritis  
 

 
 
 
 
 
 
 
 
 
 

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Complicated  UTI  
 
Definitions  
A  symptomatic  urinary  tract  infection  in:  
• Individuals   with   functional   or   structural   abnormalities   of   the   genitourinary  
tract  
• Men  
• Pregnant  women  
• Patients  with  indwelling  urinary  catheters  
 
Common  infectious  aetiologies  
Caused   by   the   same   pathogens   as   uncomplicated   UTIs.   Infections   in   patients   with  
indwelling  urinary  catheters  more  likely  to  be  caused  by  drug  resistant  organisms.    
 
Tests  
Perform  urine  cultures  in  all  of  the  above  patient  groups  presenting  with  symptoms  
of   UTI.   In   catheterised   patients   urine   specimens   should   be   obtained   after   catheter  
removal  from  a  freshly  placed  catheter  or  voided  midstream  sample.  
If  fever/symptoms  persist  >  48  hours:  
– Perform  blood  culture  (in  case  of  resistant  bacteria)  
– Image  the  urinary  tract  and  abdomen  to  exclude  collections  
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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Catheter-­‐associated  UTI  

 
NB:  non-­‐specific  signs  of  CA-­‐UTI  include  fever   or  rigors,  altered  mental  state  and  
unexplained  lethargy  
 
 
 
 
 

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UTI  in  men  

 
 
UTI  in  pregnancy  
 
i.  Asymptomatic  bacteriuria  
 
Pregnant   women   with   asymptomatic   bacteriuria   are   at   increased   risk   of  
developing  pyelonephritis.  Therefore  all  pregnant  women  should  be  screened  
for  bacteriuria.  
 
Diagnosis:    
• Any  culture  showing  ≥  103  cfu/ml  of  a  single  organism  (or  any  E.  coli)  
in  an  asymptomatic  pregnant  woman  
 
Management:  
• Appropriate  oral  antibiotic  for  5  days  (see  below)  
• Perform  follow-­‐up  urine  culture  to  confirm  sterility  
 
 
ii.  Cystitis  and  pyelonephritis  
 
Diagnosis:  
• As  per  uncomplicated  UTI  guidelines  

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• Always  send  urine  culture  


 
Management:  
 
Ciprofloxacin   is   contraindicated   in   pregnancy.   Therefore   the   following  
empiric  antibiotics  should  be  used,  with  de-­‐escalation  to  narrower  spectrum  
antibiotics  once  organism  and  sensitivities  available:  
• Cystitis  or  mild  pyelonephritis:  
– Coamoxiclav   1   g   po   12-­‐hourly   before   the   3rd   trimester.  
Cefuroxime   250   mg   po   8-­‐hourly   is   preferred   in   the   3rd  
trimester  due  to  decreased  risk  of  necrotizing  enterocolitis  
– Duration  5  days  for  cystitis,  14  days  for  pyelonephritis  
• Severe  pyelonephritis  
– Treat  as  per  uncomplicated  UTI  guidelines  
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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Chapter  12  
Sexually  transmitted  infections  
 
Vaginal  discharge  
 
Definitions  
Vaginal   and   occasionally   cervical   infection   characterised   by   discharge,   itching   or  
odour.  
 
Common  aetiologies  
• Bacterial   vaginosis   (BV):   replacement   of   normal   flora   by   polymicrobial  
overgrowth  
• Trichomoniasis:  T.  vaginalis    
• Candidiasis:  Candida  albicans  
• Cervicitis:  C.  trachomatis  and  N.  gonorrhoeae  
 
Tests  
No  tests  are  necessary  to  confirm  specific  causes  at  the  initial  presentation.  
For  recurrent  or  persistent  symptoms,  attempt  to  confirm  diagnosis  by  office  tests:  
• Bacterial  vaginosis  
– Clue  cells  on  microscopy  
– pH  of  vaginal  fluid  >  4.5  
– Whiff  test:  fishy  odour  after  addition  of  KOH  to  vaginal  fluid  
• Trichomoniasis  
– Wet  prep  slide  to  visualise  motile  organisms  (sensitivity  70%)  
• Candidiasis  
– Wet  prep  slide  with  KOH  demonstrating  yeasts  and  pseudohyphae  
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

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Diagnosis  and  management  

 
Penicillin  allergy  (severe)  
Omit  ceftriaxone  and  increase  azithromycin:  2  g  po  single  dose  
 
 
 
 
 
 
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Urethritis  
 
Definition  
Urethral  inflammation  from  infectious  and  non-­‐infectious  causes  
 
Common  aetiologies  
• Gonococcal  urethritis  (N.  gonorrhoeae)  
• Non-­‐gonococcal  urethritis  (NGU)  
– Chlamydia  (C.  trachomatis)  
• Non-­‐chlamydial  NGU:  usually  no  pathogen  found  
 
Tests  
Usually  requires  no  special  investigations.    
 
Diagnosis  and  management  

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Genital  ulcer  syndrome  (GUS)  
 
Definition  
New  genital,  anal  or  perianal  lesion  after  recent  sexual  activity.  
 
Common  aetiologies  
Sexually  transmitted  
• HSV  and  syphilis  most  common  
• H.  ducreyi    (chancroid)  
• C.  trachomatis  (LGV)  
 
Non-­‐sexually  transmitted  

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• Infectious:  folliculitis,  candida,  tuberculosis  


• Non-­‐infectious:   trauma,   malignancy,   eczema,   psoriasis,   contact   dermatitis  
(latex  allergy),  aphthous  ulcers  
 
Diagnosis  
It  is  not  possible  to  distinguish  the  causes  on  clinical  grounds  alone.  Do  not  diagnose  
a   venereal   cause   of   GUS   if   no   sexual   activity   in   the   past   3   months   (except   for  
reactivated  HSV).  
 
Recurrent   Herpes  simplex  reactivation  
Painless   Primary  syphilis  
Lymphogranuloma  venerum  (LGV)  
Painful   Herpes  simplex  (HSV)  
Chancroid  
Lymphadenopathy   Syphilis  
HSV  
LGV  (massive,  often  unilateral)  
Chancroid  
 
Tests  
Usually  requires  no  investigations.    
 
Management  

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Chapter  13  
Acute  meningitis  
 
Definition  
• Acute  inflammation  of  the  meninges  of  <7  days  duration.    
 
Likely  pathogens  
• Common  –  Various  bacteria,  viruses.  TB  meningitis  can  present  acutely.  Rare  
-­‐  fungi,  protozoa  and  helminths  
• Common   bacterial   pathogens   are   Streptococcus   pneumoniae,   Neisseria  
meningitidis,   Haemophilus   influenzae   and   Listeria   monocytogenes   (in  
immunocompromised  and  elderly  patients).  
 
Clinical  features  
• Any   2   of   the   4   cardinal   features;   headache,   fever   >   37.5oC,   neck   stiffness   and  
altered  mental  status  
• Supporting   features   are   photophobia,   blanching   or   purpuric   rash   and  
vomiting  
 
Tests  
• See  algorithm  for  lumbar  puncture  and  CT  brain  

 
 
 

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Management  
General  principles:  
• Patients  with  suspected  bacterial  meningitis  should  receive  ceftriaxone  2  g  iv  
immediately.  The  dose  for  continued  treatment  is  2  g  iv  12-­‐hourly  
• Penicillin  allergy  is  not  a  contra-­‐indication  to  use  of  ceftriaxone,  unless  the  
allergy  was  life  threatening  
• Blood  culture  and  lumbar  puncture  should  be  performed  before  
administration  of  antibiotics  ONLY  if  this  does  not  cause  significant  delay    
• If  bacterial  meningitis  is  strongly  suspected  on  the  basis  of  clinical  and  CSF  
findings  and  all  cultures  are  negative  give  ceftriaxone  for  10  days  
• Steroids  are  not  recommended  
 
Specific  therapy:  
• S  pneumoniae:  duration  10  days  
– If  MIC  unknown  or  >  0.1  microg/ml:  ceftriaxone  2  g  iv  12-­‐hourly  
– If  MIC  <  0.1  microg/ml:  penicilin  G  4  mU  ivi  4-­‐hourly  or  ampicillin  2  g  
iv  4-­‐hourly  
• N  meningitidis:  duration  7  days  
– Ceftriaxone  2  g  iv  12-­‐hourly  
• L  monocytogenes:  duration  21  days  
– Ampicillin  2  g  iv  4-­‐hourly  
• Gram-­‐negative  infection:  duration  21  days  
– Community-­‐acquired:  cefepime  2  g  iv  8-­‐hourly  or  ceftazidime  2  g  iv  8-­‐
hourly  
– Health  care  associated:  meropenem  2  g  iv  8-­‐hourly  

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Chapter  14  
Peripheral  line  sepsis  
 
Peripheral  line-­‐related  infections  increase  morbidity,  mortality,  antibiotic  usage  and  
length   of   stay.   PREVENTION   BY   EARLY   REMOVAL   OF   LINES   IS   THE   KEY  
INTERVENTION.  By  definition  these  are  healthcare  associated  infections  (HCAI)  with  
a  high  risk  of  resistant  pathogens.  

Likely  pathogens  
Staphylococcus  aureus  (MSSA/MRSA),  Coagulase  negative  staphylococci,  
Streptococcus  spp.    
 
Diagnosis  and  management  

 
 
 
 
 
 

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Chapter  15  
Staphylococcus  aureus  bacteraemia  
 
Staphylococcus   aureus   (S.   aureus)   bloodstream   infection   carries   a   high   mortality  
rate.   It   is   commonly   introduced   by   vascular   line   infections   or   other   health-­‐care  
associated   interventions,   but   can   result   from   invasive   S.   aureus   at   any   site.   S.   aureus  
bacteraemia   can   disseminate   to   any   organ   including   heart   valves,   bone   and   lungs,  
and   therefore   requires   prolonged   intravenous   therapy   with   higher   doses   of  
appropriate  antibiotics.    

Definitions  and  dosing  

Methicillin  sensitive  S.  aureus  (MSSA)  

• Sensitive  to  anti-­‐staphylococcal  beta-­‐lactam  antibiotics  

• Cloxacillin  is  the  treatment  of  choice:    

– Initial  dose  2  g  6  hourly  IV  

– Use   3   g   6   hourly   for   endocarditis,   prosthetic   heart   valves   or   other  


endovascular  material,  meningitis  and  osteomyelitis  

Methicillin  resistant  S.  aureus  (MRSA)    

• Resistant  to  beta-­‐lactam  antibiotics  

• Vancomycin  is  the  treatment  of  choice:  

– Loading  dose  25  –  30  mg/kg  slow  infusion  

– Thereafter   15-­‐20   mg/kg   BD   (will   require   lower   doses   and/or   less  


frequent  intervals  in  renal  impairment)  

– Measure  trough  levels  before  the  4th  dose  and  aim  for  a  target  of  15  –  
20  mg/L    

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Management  

 
Clinical  features  of  complicated  S.  aureus  bacteraemia  include  persistent  fever,  bone  
pain,   new   murmur   or   peripheral   manifestations   of   endocarditis   or   focal   neurological  
signs.  Patients  with  these  problems  require  directed  investigations  for  source  control  
and  should  be  discussed  with  an  infectious  diseases  specialist.    

 
 
 
 
 
 
 
 
 
 

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Chapter  16  
Skin  and  soft  tissue  infections  
 
Cellulitis  
 
Definition  
Acute  infection  involving  skin  and  subcutaneous  tissue  
• Commonly  precipitated  by  minor  trauma  or  underlying  skin  lesion  
 
Diagnosis  (Image:  http://treatmentofcellulitis.net)  
Clinical  only:  
• Redness,  tenderness,  local  heat,  non-­‐raised  edges  
 
Differentiate  from:  
Infections   Non-­‐infectious  
Erysipelas   DVT  
Necrotising  fasciitis   Insect  bites  
Gas  gangrene   Fixed  drug  reaction  
 
Common  aetiologies  
• Streptococci  (usually  S.  pyogenes)  
• S.  aureus  
 
Tests  
None  recommended  
• Blood  cultures  are  rarely  positive  and  not  generally  helpful  unless  extensive  
or  severe  infection.  
• Superficial  pus  swabs  are  not  helpful  and  should  NOT  be  performed  
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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Management  

 
 
 
Cutaneous  abscess  
 
Definition    
Deep   inflammatory   nodule   extending   into   subcutaneous   tissue   that   develops   from  
preceding  folliculitis  
 
Common  aetiologies  
S.  aureus  
 
Tests  
None  
 
Management  
All  cases  require  surgical  drainage.  
 
Uncomplicated  cases  
• No  antibiotics  required  
 
Complicated  cases  (surrounding  cellulitis,  located  on  face,  systemic  symptoms)  
• Flucloxacillin  500  mg  po  6-­‐hourly  for  5  days  or  co-­‐amoxiclav  1g  po  12-­‐hourly  
• In  penicillin  allergy  use  clindamycin  450  mg  po  8  hourly  
 

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Diabetic  foot  
 
Definition    
Chronic  foot  infections  in  diabetics  
• Mild:   limited   to   skin/superficial   subcutaneous   tissue   <   2   cm   beyond   ulcer  
margin  
• Moderate:   cellulitis   >   2   cm,   deep   fascial   involvement,   gangrene,   abscess,  
osteomyelitis  
• Severe:  systemic  complications  
 
Common  aetiologies  
• Mild  infections  or  previously  untreated  
– S.  aureus  
– Streptococci  
• Chronic  lesions  or  previously  treated  
– Above  plus  
– Enterobacteriaceae  
• Chronic,  refractory  or  prolonged  broad  spectrum  antibiotics  
– Above  plus  
– Pseudomonas  
– Anaerobes  
– Enterococci  
 
 
Tests  
None   required   in   mild   or   previously   untreated   infections.   Tissue   cultures   are  
recommended   in   all   other   scenarios.   It   is   essential   to   clean   and   debride   the   lesion  
before   obtaining   specimens   for   culture.   Blood   cultures   should   be   performed   in  
severe  infections.  
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

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Diagnosis  and  management  

 
 
Penicillin  allergy:  
• Mild/moderate  infections:    
Clindamycin  450  mg  po  8-­‐hourly  (add  ciprofloxacin  500mg  po  12-­‐hourly  if  
requires  admission)  
• Severe  infections:    
Clindamycin  600  mg  iv  8-­‐hourly  PLUS  ciprofloxacin  400  mg  iv  8-­‐hourly  
 
Wound  management  
Optimal   wound   care   is   essential.   Surgical   consultation   is   recommended   for   the  
following  problems:  
• Deep  abscess  
• Bone  or  joint  involvement  
• Crepitus  
• Gangrene  
• Necrotising  fasciitis  
• Severe  vascular  insufficiency  
 
 
 
 
 
 
 
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Necrotising  fasciitis  
 
Definition  (image:  http://medicatoz.com/news/view?id=57)  
Acute   severe   infection   involving   subcutaneous   soft   tissues   including   the   fascial  
layers.   Usually   precipitated   by   trauma,   surgery,   peri-­‐rectal   abscess,   bedsores   or  
bowel  perforation.  
 
 
 
 
 
 
 
 
 
 
 
 
Common  aetiologies  
Usually  polymicrobial  infections:  
• Streptococci  
• Enterobacteriaceae  
• Anaerobes  
 
Tests  
Blood  cultures  and  surgical  tissue  specimens.  
 
Diagnosis  and  management  
Necrotising   fasciitis   is   commonly   associated   with   systemic   toxicity   manifested   by  
fever,   leukocytosis   and   possibly   organ   dysfunction.   It   rapidly   progresses   to  
cutaneous  gangrene.  Management  involves  the  following:  
1. Early  and  aggressive  surgical  debridement  
2. Co-­‐amoxiclav  1.2  g  IV  continued  until  clinical  resolution  
 
Alternative  antibiotic  regimens  
• If  co-­‐amoxiclav  unavailable:   ampicillin  1  g  6-­‐hourly  PLUS  metronidazole  500  mg  
8-­‐hourly  PLUS  gentamicin  6  mg/kg/day,  all  iv  
• For   refractory   infections   and   in   penicillin   allergy:   clindamycin   600   mg   8-­‐hourly  
PLUS  ciprofloxacin  400  mg  8-­‐hourly,  both  iv  
 
 
   

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Chapter  17  
Bone  and  joint  infections  
 
SEPTIC  ARTHRITIS  
 
Definition  
Bacterial  joint  infection,  usually  due  to  haematogenous  spread.  
 
Common  aetiologies  
• Non-­‐gonococcal  
o S  aureus  most  common  
o Streptococcus  spp.  (S  pyogenes,  S  pneumoniae,  S  agalactiae)  
o Gram-­‐negative   organisms   (elderly,   immunocompromised,  
comorbidities)  
• N  gonorrhoeae  
 
Tests  
In  all  cases:  
• Joint  aspirate  BEFORE  ANTIBIOTICS  
o Cell  count  plus  differential:  high  neutrophil  count  in  most  cases  
o Gram  stain  and  culture    
o Microscopy  for  crystals  
• Plain  X-­‐ray  
 
Diagnosis  and  management  

 
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OSTEOMYELITIS  
 
Definition  
Bacterial  infection  of  bone  due  to  contiguous  spread  from  soft  tissues,  
haematogenous  seeding,  or  direct  inoculation.  
 
Common  aetiologies  
• Common  
– S  aureus  
– Coagulase-­‐negative  staphylococci  
• Occasional  
– Streptococci  
– Enterococci  
– Gram-­‐negative  bacilli  
• Other  
– M  tuberculosis  
– Fungal  infections  
 
Tests  
• Always  send  specimens  for  culture  
– Deep  tissue  specimen:  open  surgical  procedure  or  guided  needle  
aspiration  
– Blood  culture  
• Imaging  
– Plain  X-­‐ray  in  all  cases  
– May  require  other  modalities  such  as  bone  scan,  CT  or  MRI  
• CRP  may  be  useful  to  monitor  response  to  therapy  
 
Diagnosis  and  management  

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Notes:  
• May  need  to  continue  IV  therapy  for  6  weeks  or  longer  
• Do  not  add  rifampicin  in  cases  without  foreign  material  
• Consider  tuberculosis  if  culture-­‐negative  or  no  clinical  improvement  
• Vancomycin  is  used  for  health  care-­‐associated  osteomyelitis  or  confirmed  
MRSA  (loading  dose  23  –  30  mg/kg  followed  by  15  –  20  mg/kg  12-­‐hourly;  
maintain  trough  levels  15  –  20  mg/mL)  
• See  Chapter  18  for  management  of  open  fractures  
• Infections  associated  with  prosthetic  material  should  be  discussed  with  an  
expert  
 
 
 
 
 
 
 
 
 
 
 
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Chapter  18  
Prophylaxis  
 
Surgery  
Surgical   prophylaxis   aims   to   prevent   infection   following   a   predictable   exposure   to  
bacteria.  Antibiotics  are  only  required  during  exposure  and  a  single  dose  taken  pre-­‐
operatively   is   usually   sufficient.   A   repeat   dose   should   only   be   given   if   surgery   is  
prolonged   or   there   is   massive   blood   loss.   Choice   of   antibiotic   depends   on   which  
bacteria   are   likely   to   be   introduced   by   the   operation,   usually   normal   colonisers   of  
skin  or  bowel.  Examples  are  given  below  but  refer  to  local  policies  for  guidance.    
 
Type  of  surgery   Prophylaxis  
Cardiothoracic   Cefazolin  2g  iv  
Upper  GI  
Neurosurgery  
Orthopaedic  (elective  non-­‐trauma)  
Lower  limb  amputation   Cefazolin  2g  iv  
Colorectal   Plus  
Biliary   Metronidazole  500mg  iv  
Pelvic  
ENT  
Ophthalmic   Chloramphenicol  0.5%  drops  
ERCP  with  obstruction     Ciprofloxacin   500mg   po   2h   prior   to   the  
procedure   or   cefuroxime   1.5g   iv   or  
PIP/TZ   4.5g   iv,   both   1h   prior   to   the  
procedure  
Surgery   for   the   implantation   of   any   Cefazolin   2g   iv   or   cefuroxime   1.5g   iv   or  
permanent  prosthetic  material     vancomycin  1g  iv  as  single  dose  
Penetrating   abdominal   trauma   or   open   Cefazolin  2g  iv  +  metronidazole  500mg  IV    
fracture   and  second  dose  if  procedure  >  3h    
 
Head  injuries  
Closed   head   injuries   with   non-­‐penetrating   wounds   do   not   require   antibiotic  
prophylaxis   even   if   there   is   a   CSF   leak.   Compound   depressed   skull   fractures   and  
penetrating   spinal   cord   injuries   do   require   prophylaxis/pre-­‐emptive   treatment   e.g.  
ceftriaxone  plus  metronidazole  for  5  days.  
 
Open  long  bone  fractures  
If  early  (<  5  hours)  washout  and  debridement,  provide  prophylaxis  with  cefazolin  1g  
iv   12-­‐hourly   for   48   hours   only.   If   long   delay   to   washout   or   significant   contamination,  
treat  with  coamoxiclav  1.2  g  ivi  12-­‐hourly  for  5  days.  
 
Infective  endocarditis    
The  evidence  base  is  weak  and  guidelines  are  largely  based  on  expert  opinion,  which  
differs   between   countries   and   region.   In   general   only   those   at   the   highest   risk   of  

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infective  endocarditis  should  be  offered  prophylaxis  and  then  only  when  the  risk  of  
bacteraemia  from  the  procedure  is  high.  
 
Conditions  requiring  prophylaxis  
• Significant  congenital  or  acquired  cardiac  abnormalities  
• Prosthetic  valves  or  valvular  repair  utilising  prosthetic  material  
• Previous  infective  endocarditis  
 
Procedures  requiring  prophylaxis  
• Dental   procedures   involving  manipulations   if   the   gingival   or   perapical   region  
of  the  teeth  or  perforating  the  oral  mucosa.  
 
 
 
Examples  of  regimens  are  given  in  the  table.    
 
Procedure   Regimen   Alternative  
Dental,   oral   or   upper   Amoxicillin  3g  po   Clindamycin  600mg  iv  
respiratory  tract  
Genitourinary,   Ampicillin  2g  iv   Vancomycin  1g  iv  
gastrointestinal  or   Plus  gentamicin  1.5mg/kg     Plus  gentamicin  1.5mg/kg  
biliary  
   
Rheumatic  fever  
• Secondary   prophylaxis   should   be   prescribed   for   all   patients   following  
rheumatic  fever  to  prevent  recurrences  
 
Duration    
• Without  carditis  5  years  after  last  attack  or  21  years  (whichever  is  longer)  
• With  mild  carditis  10  years  after  last  attack  or  21  years  (whichever  is  longer)  
• With  carditis  and  residual  heart  disease  10  years  or  until  age  40  (whichever  is  
longer).  Sometimes  life-­‐long  prophylaxis.    
 
Regimen  
• Benzathine   penicillin   1.2MU   IM   every   3-­‐4   weeks   or   penicillin   V   250mg   po   12-­‐
hourly.  If  penicillin  allergic  azithromycin  250mg  daily.  
 
 
 

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