Slides For Topic V by Prof. Arnab Dutta
Slides For Topic V by Prof. Arnab Dutta
Slides For Topic V by Prof. Arnab Dutta
CH 105
Inorganic & Organic Chemistry
Module: Bioinorganic Chemistry
Chemistry Department
IIT Bombay
Relevance of
Bioinorganic Chemistry
O2 a key player in
Bioinorganic Chemistry
Hemoglobin &
reversible O2 binding
Trivia
CH 105
Outline
Relevance of
Bioinorganic Chemistry
O2 a key player in
Bioinorganic Chemistry
Hemoglobin &
reversible O2 binding
Trivia
CH 105 Why do we learn Bioinorganic Chemistry ?
1
CH 105 Why do we learn Bioinorganic Chemistry ?
5
CH 105 Bioinorganic Chemistry influenced evolution?
Triggered by photosynthesis
CO2 + H2O C6H12O6+O2
6
CH 105 Bioinorganic Chemistry influenced evolution?
Triggered by photosynthesis
CO2 + H2O C6H12O6+O2
B. Biddanda et al., Nature Education Knowledge, 2012, 3(10):13 O2 is a strong oxidizing agent
1. Extinction
O2 binding
to Hemoglobin Inorganic elements are crucial for Biology
8
CH 105
Outline
Relevance of
Bioinorganic Chemistry
O2 a key player in
Bioinorganic Chemistry
Hemoglobin &
reversible O2 binding
Trivia
CH 105 Handling O2 in cellular environments
Generation of ROS in cells can cause oxidative
damage (DNA, protein, lipid)
O2 + e- O2•-
H 2 O 2 + e- + H + OH • + H2O
OH • + e- + H+ H 2O
9
CH 105 Handling O2 in cellular environments
O2 + e- O2•-
O2•- + e- + 2H+ H 2 O2
H 2 O 2 + e- + H + OH • + H2O
PDB 1SXZ OH • + e- + H+ H 2O
2O2•- + 2H+ H 2O2 + O 2
Dismutation reaction Anti-oxidants: Defense system of biology
O2 + e- O2•-
H 2 O 2 + e- + H + OH • + H2O
PDB 1DGF OH • + e- + H+ H 2O
O2 + e- O2•-
H 2 O 2 + e- + H + OH • + H2O
PDB 1HCH OH • + e- + H+ H 2O
PDB 1JOD
13
CH 105 Handling O2 in cellular environments
Cytochrome P450
Erythromycin
PDB 1JOD
O2 a key player in Oxidizing agent O2 can produce ROS [O2 •-, H2O2 , OH •]
Bioinorganic Chemistry
Transition metal containing enzymes as defense system
2O2•- 2H2O2 H 2O 2
Sub(red)
Sub(ox)
H 2O 2 + O 2 2H2O + O2 2H2O
Superoxide Dismutase Catalase Peroxidase
Use of H2O2 for controlled oxidation
O2
(peroxidase)
Sub(red)
Further advancement: Use of O2 as an oxidant
Sub(ox)
Cytochrome P450 H 2O (cytochrome P450) 15
CH 105
Outline
Relevance of
Bioinorganic Chemistry
O2 a key player in
Bioinorganic Chemistry
Hemoglobin &
reversible O2 binding
Trivia
CH 105 Hemoglobin & reversible O2 binding
Biological Energy Conversion Scheme
Step 1.
Energy Storage:
Photosynthesis
Chloroplast O2 a key player in the energy
transduction process
H2O + + O2
Respiration liberates stored
chemical energy
Energy Utilization:
Mitochondria
Respiration
16
CH 105 Hemoglobin & reversible O2 binding
Transfer of aerial
O2 to cells
http://organismalbio.biosci.gatech.edu/
17
CH 105 Hemoglobin & reversible O2 binding
Transfer of aerial Need an O2 transporter
O2 to cells Hemoglobin (Hb)
http://organismalbio.biosci.gatech.edu/
17
CH 105 Hemoglobin & reversible O2 binding
18
CH 105 Hemoglobin & reversible O2 binding
Hemoglobin (Hb)
Myoglobin (Mb)
a2b2 hetero-tetrameric Monomeric structure
structure
Deciphering the relationship between differential O2 binding & structure for Mb/Hb
19
CH 105 Hemoglobin: structure-function relationship
Hemoglobin (Hb)
a2b2 hetero-tetrameric
structure Fe-containing
heme core
Myoglobin (Mb)
Monomeric structure
20
CH 105 Hemoglobin: structure-function relationship
Analogous to
catalase,
Myoglobin (Mb) peroxidase, cyt- Cytochrome P450
Monomeric structure P450
21
CH 105 Hemoglobin: structure-function relationship
Variation in the
substituents on porphyrin
Hemoglobin (Hb) tunes its electronic
a2b2 hetero-tetrameric properties
structure Fe-containing Creates a planar N4-
heme core coordination for metal
binding
Analogous to
catalase, Anchored to protein via
Myoglobin (Mb) peroxidase, cyt- axial ligation
Monomeric structure P450
22
CH 105 Hemoglobin: structure-function relationship
O2
Hemoglobin (Hb)
a2b2 hetero-tetrameric
structure
O2
Hemoglobin (Hb)
a2b2 hetero-tetrameric
structure
Stabilization of
Fe-O2 bond
O2 via H-bonding
Hemoglobin (Hb)
a2b2 hetero-tetrameric
structure
Hemoglobin (Hb)
a2b2 hetero-tetrameric O2
structure
Hemoglobin (Hb)
a2b2 hetero-tetrameric
Structure doi.org/10.1371/journal.pone.0012389
Hemoglobin (Hb)
a2b2 hetero-tetrameric
Structure
https://pdb101.rcsb.org/motm/41 Oxy-Hb
2. Second O2:
Unfavorable (Tensed)
https://pdb101.rcsb.org/motm/41
31
CH 105
Outline
Relevance of
Bioinorganic Chemistry
O2 a key player in
Bioinorganic Chemistry
Hemoglobin &
reversible O2 binding
Trivia
CH 105
Effect of pH on Hb-O2 binding
Bohr effect
doi.org/10.1371/journal.pone.0012389
The O2-binding ability for Hb decreases at lower Needs more energy to break them
conc. of O2 with increasing acidity CO2 rich condition
33
CH 105
Better O2 delivery in fatigued cells
34
CH 105
Better O2 delivery in fatigued cells
2,3-Biphosphoglyceric
acid (2,3-BPG)
Why?
36
CH 105
Hb structure saves us from CO poisoning?
2. Favored s - and p -
bonding interactions
between O2 p* and Fe d-
orbitals
37
CH 105
Hb structure saves us from CO poisoning?
2. Disfavored s - bonding
interactions between
CO2 s and Fe dz2-
orbital