2022 2023 UNIT 1 GEN BIO 2 - Edited
2022 2023 UNIT 1 GEN BIO 2 - Edited
2022 2023 UNIT 1 GEN BIO 2 - Edited
Course Description:
This subject is designed to enhance the understanding of the principles and concepts in the
study of biology, particularly heredity and variation, and the diversity of living organisms, their
structure, function, and evolution.
Course Requirements:
Below is the list of activities that must be completed and submitted with their corresponding
percentage.
WEEK ACTIVITIES Date of Completion Raw Score Weight
1 Enabling Assessment 1 8%
2 Mini Performance Task 1 8%
3 Enabling Assessment 2 8%
4 Enabling Assessment 3 8%
5 Mini Performance Task 2 15%
6 Enabling Assessment 4 8%
7 Mini Performance Task 3 15%
8 Final Performance Task 30%
TOTAL 100%
PRE-REQUISITE ASSESSMENT
Learning Materials: Module, pen, paper, old biology books, internet (if applicable)
Pre-requisite Content-knowledge: DNA and Genetic Engineering
Pre-requisite Skill: Ability to discuss the advantage and disadvantage of recombinant
DNA technology
INTRODUCTION
To survive, man has successfully domesticated selected plants and animals. He has
taken an active part in choosing desired traits of plants and animals. Traits that were considered
valuable (i.e., high fruit yield; high milk production, etc.) were sought out and propagated. The
processes involved may include classical breeding practices such as controlled pollination of
plants, and the mating of animals with desired traits. In today’s modern science, molecular
biology techniques are being employed in the insertion and expression of proteins in different
organisms for various purposes.
Genetic engineering is a process of making changes on the genetic code of an
organism. Its goal is to add one or more new traits that are not normally found in the organism.
Through advanced studies in the structure of DNA and its chemical properties, scientists have
been able to employ different techniques to extract, cut, and make unlimited copies of DNA. The
modification of traits may involve:
1. introduction of new traits into an organism;
2. enhancement of a present trait by increasing the expression of the desired gene;
and
3. enhancement of a present trait by disrupting the inhibition of the desired genes’
expression.
DNA Sequencing
This is a method used to provide the identity and order of nucleotides in a DNA strand.
Small, single-stranded pieces of DNA are placed in test tubes with an enzyme that can make a
complementary DNA strand by using the original DNA strand as a template. A supply of the four
nucleotide bases found in DNA is then added, along with a small amount of one of the bases
that has been labeled with fluorescent dyes.
Colegio de Los Baños – GENERAL BIOLOGY 2 3
to initiate recombination. In this process, bacterial cell walls are digested, turning the cells into
protoplasts. These protoplasts are treated with polyethylene glycol to allow them to fuse,
creating a random recombination of genes. The resulting recombinant cell will now grow a new
cell wall.
Food industry
Recombinant technology has also improved
the food industry. Some of the crops that we eat are
now resistant to pests, diseases, and
environmental stress. As a result, crop yields have
increased and production costs have been kept
lowered. Recombinant crops also beneficial
because of their improved nutritional quality and
longer shelf life. Recombinant technology can also
be used for processing high-quality fermented
foods such as cheeses, pickles, wines, and
beers. Figure 13. Comparison between the borer-affected
corn crops (right) and Bt corn crops (left).
Colegio de Los Baños – GENERAL BIOLOGY 2 9
ANSWER SHEET (Please submit only the answers. Do not return the entire module.)
Name: ________________________________ Section: _______________________
LAST NAME, FIRST NAME MIDDLE INITIAL
ENGAGEMENT (WEEK 1)
Enabling Assessment Activity No.1: PROS ANS CONS
Directions: In 1 - 3 sentences, explain the pros and cons of recombinant DNA technology for
the following given category.
PROS CONS
Food Production
Pest Control
Medicine
Environment
Animals
___________________________________________________________________
SIGNATURE OVER PRINTED NAME OF PARENT/GUARDIAN
DATE: ______________
Colegio de Los Baños – GENERAL BIOLOGY 2 10
ANSWER SHEET (Please submit only the answers. Do not return the entire module.)
ENGAGEMENT (WEEK 2)
Mini Performance Task No.1: DESIGNER GENES
Construct a genetically modified organism/trait in a fruit. (50 points)
1. Identify a special trait (e.g. large fruit size) ____________________________
2. Identify a source organism (e.g. langka) ____________________________
3. Identify a target organism (e.g. aratilis) ____________________________
4. Identify the modified trait (e.g. langka-sized aratilis) ____________________________
5. Illustrate your proposed “designer genes
Questions:
1. Has anyone done studies of this type before?
2. How possible is the proposed modification? Can the target organism support the proposed
trait?
___________________________________________________________________
SIGNATURE OVER PRINTED NAME OF PARENT/GUARDIAN
DATE: ______________
Colegio de Los Baños – GENERAL BIOLOGY 2 11
PRE-REQUISITE ASSESSMENT
Learning Materials: Module, pen, paper, old biology books, internet (if applicable)
Pre-requisite Content-knowledge: Origin of Life
Pre-requisite Skill: Able to differentiate the various geological times based on fossil records
and ancient events.
INTRODUCTION
Since then, scientists have developed various intellectual procedures in identifying life’s
history by examining ancient rocks, petrified sap of ancient tree, tar pits, and even polar glaciers.
With the information obtained from rock layers and fossils worldwide, scientists have estimated
the relative age of Earth and identified the major groups of organisms that have survived on
Earth during a specific time frame.
Paleontology
Paleontology is the scientific study of the existence
of life, including the origin and eventual destruction or
extinction of different groups of organisms. Paleontologists
specialize in studying the ecologies of the past and the
evolution of organisms that thrived in these ecologies
through careful observation and documentation of fossils.
They work to identify the forms of life that existed millions of
years ago. They figure out how things were in ancient times
using fossil records. An example of a fossil record is shown
in Figure 5, a fossil of Archaeopteryx lithographica from the
late Jurassic period. The Archaeopteryx is said to have had
many features of dinosaurs, which provide strong evidence
of the dinosaur ancestry of birds. These pieces of evidence
include sharp teeth, tiny forelimbs that have three claws, a Figure 5. Fossils of Archaeopteryx.
long bony tail, and a head covered with scales.
Geology
Geology is the study of life on Earth based on the evidence found on rocks. Geologists
are scientists who carefully study the different materials that make up Earth. They work to
understand the history of Earth by focusing on the changes of Earth over time in relation to
changes in climate and land formation. They specifically investigate rock formation and even
fossils to measure different physical properties of Earth.
Geologic Time Scale
To summarize, paleontologists look at the fossil remains of different types of organisms
beneath the surface of Earth to study primitive life, and geologists study the outer layer of Earth’s
crust to understand the history of Earth. They work together to understand the history or
evolution of life on Earth. They use the geologic time scale to divide Earth’s history into time
intervals. Scientists were able to develop the timescale by studying rock layers and index fossils
worldwide. The information obtained from these pieces of evidence made it possible for them
to identify the relative age of Earth.
Colegio de Los Baños – GENERAL BIOLOGY 2 15
Eons
Eons are the largest divisions in the geologic timeline. They are composed of hundreds
of millions of years in duration. The recent one is the Phanerozoic eon, which began more than
500 million years ago. This eon is characterized by the existence of organisms that had
skeletons or hard shells. Proterozoic eon (from 2.5 billion years ago to 540 million years ago),
where the first multicellular organisms arose and where mass extinction occurred; the
Archaeozoic eon (from 3.9 to 2.5 billion years ago) where the first life-forms represented by
single-celled organisms appeared; and the Hadean eon (from 4.6 to 3.9 billion years ago), which
is characterized by Earth’s formation from dust and gases. The Proterozoic, Archaeozoic, and
the Hadean eons are sometimes collectively known as the Precambrian time, which accounts
for almost 90% of Earth’s history.
Eras
An eon can be divided into smaller time intervals known as eras. The Phanerozoic eon
is divided into three eras, namely, Paleozoic, Mesozoic, and Cenozoic eras.
1. Paleozoic Era – This era began about 540 million years ago and lasted for about 300
million years. This is when fossil records became rich with evidence of many marine
organisms. During the Paleozoic era, mollusks developed the ability to be buoyant (to
float), echinoderms began to multiply, and coral reefs began to flourish.
2. Mesozoic era- This era began about 200 million years ago and lasted for about 180
million years. This era is also called the Age of Reptiles and, sometimes, the Age of
Dinosaurs because this is when many kinds of dinosaurs existed. The Mesozoic era is
also marked by the appearance of flowering plants. A fossil of one of the earliest known
salamanders during the Mesozoic era is shown in Figure 7.
Figure 8. A mural of the animals that lived during the Cenozoic era.
Periods
Periods are further subdivisions of era. The Proterozoic eon is composed of the
Vendian/Ediacaran period. Prokaryotic organisms began to appear during this period, first with
the anaerobic life-forms, and then followed by the photosynthetic organisms, which added
oxygen to the atmosphere. However, life in this period only thrived underwater, and only a few
fossils existed because the animals were all soft-bodied.
The Paleozoic era has been divided into the Cambrian, Ordovician, Silurian, Devonian,
Carboniferous, and Permian periods.
1. Cambrian Period- During this period, organisms have hard body parts such as shells
and outer skeletons. The first known representatives of most animal phyla evolved
during this period, which include jellyfishes, worms, and sponges. Also common during
this period were the brachiopods, which were small animals with two shells. These
organisms resembled (but were not related to) modern clams. Hard-shelled, segmented
creatures called trilobites were the most dominant macroscopic life-forms in this period.
The Modocia typicalis is a representative trilobite from the Cambrian period.
Colegio de Los Baños – GENERAL BIOLOGY 2 17
2. Ordovician Period- Primitive plants, fungi, fishes, and seaweeds appeared during this
period. The Ordovician is marked by the appearance of the first vertebrates, animals
with backbones, to appear in this period were jawless fishes which had sucker-like
mouths. The period is characterized by high sea levels, global cooling, glaciations, and
volcanism.
3. Silurian Period- The first that appeared in this period were jawed fishes and uniramians
(insects, centipedes, and millipedes). During the Silurian Period, the climate was
generally warm and stable, in contrast to the glaciers of the late Ordovician and the
extreme heat of the Devonian. The climate provided for one of the most significant
developments: the arrival of the first plants to colonize the land. Lichens were probably
the first photosynthetic organisms to cling to the rocky coasts of the early continents.
4. Devonian Period- Many plants, including ferns, adapted to drier, which allowed them to
invade other kinds of habitats. Aquatic areas, on the other hand, were mostly populated
with both invertebrates and vertebrates. This period is referred to as the Age of Fishes
because many groups of fishes have evolved during this period. Most of the fishes in
this period had jaws, bony skeletons, and scales. Sharks appeared in the later parts of
the period. A fernlike leaf fossil found during the Devonian period is shown in Figure 10.
5. Carboniferous Period- The reptiles, animals with scaly skins that lay eggs with tough
leathery shells, evolved from amphibians. Large, winged insects evolved into many
forms, such as dragonflies and cockroaches. Also, giant ferns and other plants formed
vast swampy forests. The remains of ancient plants formed thick deposits of sediments
that changed into coal over millions of years, especially during the Carboniferous period.
6. Permian Period- The period is also known as the “Age of Amphibians because of the
domination of amphibians and a few reptiles on both land and water. Most plants during
the period included gymnosperms. Continents emerged into a single supercontinent
known as Pangaea.
At the end of the Paleozoic era, many organisms became extinct, including trilobites and
many amphibians. The mass extinction at the end of the Paleozoic era affected both plants and
animals on land and even in the seas. As much as 95% of complex life-forms in the oceans
disappeared. However, those which survived the mass extinction included reptiles and groups
of fishes.
The Mesozoic era was divided into the Cretaceous, Jurassic, and Triassic periods.
These periods represent the age when many forms of dinosaurs are believed to have existed
on Earth. Their extinction could have been brought about by an asteroid impact or volcanism.
1. Triassic Period- Many organisms at the onset of the Triassic period survived the mass
extinction during the Permian period, including fishes, insects, reptiles, and cone-bearing
plants. Then, about 225 million years ago, the first dinosaurs appeared. One of the
earliest dinosaur species belonged to the genus Coelophysis, which were meat-eaters
that had light, hollow bones to help them run swiftly on their hind legs. Mammals also
appeared during the latter part of this period, which probably evolved from mammal-like
reptiles. Mammals during the Triassic period were very small (i.e., about the size of a
mouse). A remarkably complete skeleton of Coelophysis bauri, a very small dinosaur,
and a graphical representation of how Earth looked during the Triassic period are shown
in Figures 13a, and 13b, respectively.
Figure 13. (a) A fossil of Coelophysis bauri at a dinosaur museum in New Mexico; (b)
mural showing the flora and fauna that existed during the Triassic period.
2. Jurassic Period- Dinosaurs became the dominant animals on land for about 150 million
years. However, various types of land animals lived at different time frames.
Dicraeosaurus was one of the largest dinosaurs in this period with height of more than
2 meters, and length that is up to 12 meters. Archeopteryx, one of the earliest known
birds, also appeared in this period. Because of the presence of feathers, their similar
body structure, and the presence of scales usually on their feet, Archeopteryx made
paleontologists believe that birds are close relatives of dinosaurs.
Figure 14. Comparing the height of the Dicraeosaurus and an average adult human
Colegio de Los Baños – GENERAL BIOLOGY 2 19
3. Cretaceous Period- Reptiles were the dominant vertebrates on Earth during this period.
Also, several kinds of birds began to exist alongside Pterosaurus (flying reptiles).
Iguanodon and Triceratops species emerged as common herbivores, and
Tyrannosaurus rex (one of the largest and fiercest carnivorous dinosaurs) and
Spinosaurus were some of the dominant carnivores in this period. Other aquatic
organisms such as rays, sharks, corals, and sea stars, as well as marine reptiles such
as mosasaurs and plesiosaurs dominated different bodies of water. The angiosperms,
the flowering plants, also arose during this period. The cretaceous period ended with a
meteorite-caused mass extinction.
2. Quaternary Period- This period, coined as the “Age of Man”, is from 1.8 million years
ago up to the present and is characterized by a series of ice ages followed by warmer
climates. The earliest modern humans are believed to have existed at the start of this
period. Also, thick continental glaciers advanced and retreated over parts of Europe and
North America. A large portion of the bodies of water was frozen in continental glaciers,
causing the sea level to fall by more than 100 meters. Then, about 20 000 years ago,
Earth’s climate began to warm, causing the continental glaciers to melt, which resulted
in the increase in sea levels. Different marine organisms such as algae, corals, mollusks,
fishes, and sea mammals thrived. Flying insects shared the skies with birds. On land,
mammals such as bats, cats, dogs, cattle, and mammoths became common. Fossil
records suggest that the earliest ancestors of our species, called hominids, appeared
about 4.5 million years ago but they did not look entirely like modern humans. Modern
humans called Homo sapiens may have evolved as early as 100 000 years ago in Africa.
From there, they began a series of migrations, which resulted in the human colonization
of the world.
Colegio de Los Baños – GENERAL BIOLOGY 2 20
Epochs
Epochs are finer subdivisions shown in the Cenozoic era and parts of the Mesozoic era.
They are only done for the most recent portion of the geologic timescales because old rocks in
the late portions of the timescales have been buried deeply, causing them to be intensely
deformed and severely modified by long-term Earth processes.
Figure 19. Fossil skeleton of Equus simplicidens Figure 20. A fossil of a male mammoth
Colegio de Los Baños – GENERAL BIOLOGY 2 21
ANSWER SHEET (Please submit only the answers. Do not return the entire module.)
ENGAGEMENT (WEEK 3)
Enabling Assessment Activity No.2. HISTORY OF LIFE ON EARTH
Directions: Listed in the first column are different eons with respective eras and periods.
Indicate 2 species for each period.
___________________________________________________________________
SIGNATURE OVER PRINTED NAME OF PARENT/GUARDIAN
DATE: ______________
Colegio de Los Baños – GENERAL BIOLOGY 2 22
PRE-REQUISITE ASSESSMENT
Learning Materials: Module, pen, paper, old biology books, internet (if applicable)
Pre-requisite Content-knowledge: Evolution
Pre-requisite Skill: Knowledge on the different types of theories related to the evolution of the
species
INTRODUCTION
A. Natural Selection
A key factor for an organism to thrive and reproduce
depends on how well-suited the organism is to the
environment. The ability of an individual to survive and
reproduce in a specific environment is called its fitness. For
an individual to be fit in an environment, it must successfully
adapt to it. The concept of fitness is the central process of
evolution by natural selection. Individuals with
characteristics that are not suited to the environment either
die or live with few offspring, whereas individuals with
characteristics that are very much suited to the environment Figure 1. The Raphus cucullatus or dodo bird.
survive and reproduce successfully. Over time, natural
Colegio de Los Baños – GENERAL BIOLOGY 2 23
Artificial Selection
In artificial selection, nature provides the variation among different organisms so that
humans can select the variations that are useful to them through a technique called selective
breeding. This type of mechanism is done by farmers and breeders. In this process, individuals
with desirable traits or characteristics are bred to increase the chances of having offspring with
the same desirable traits. With the help of artificial selection, breeders can produce a wide range
of plants and animals that look very different from their ancestors. Artificial selection is widely
used today to shape a variety of traits. Figure 5 shows how artificial selection was used on the
wild mustard. Farmers have cultivated numerous crops from the wild mustard by considering
the desired traits breeding them; thus, different kinds of vegetables were produced.
Figure 5. Some of the common vegetables that have been cultivated from the wild mustard
include cabbage, broccoli, and cauliflower.
Nonrandom Mating
Nonrandom mating also contributes to the population change from one generation to the
next. This is described as the selected probability of mating with another individual in the
population. Nonrandom mating may take forms, namely, inbreeding and outbreeding.
Inbreeding is when individuals are more likely to mate with their close relatives than
with distant relatives. In this manner, individuals choose their mates based on the genetic
history. This type of breeding results in changes in genotype frequencies, Although the
frequencies of alleles in the population remain unchanged. One example was practiced by royal
families several years ago, when they preferred marrying only other royal members to keep their
bloodlines ‘pure’. The problem with this type of breeding is that there is a higher chance of
inheriting disease conditions caused by harmful recessive genes.
Outbreeding happens when individuals select distant relatives than close relatives as
their partners. In this type of breeding, individuals with similar phenotypes are more likely to
mate. In humans, if short girls prefer only short guys, then there would be a higher frequency of
short alleles in the population. Figure 6 shows an example of inbreeding and outbreeding that
may happen to snakes. Note that there is a deleterious allele that may be expressed when there
is inbreeding. This deleterious allele decreases the fitness of the organism carrying it.
Colegio de Los Baños – GENERAL BIOLOGY 2 26
Genetic Drift
Genetic drift is caused by unpredictable changes in allele frequencies due to small
population sizes. Thus, a certain allele can be passed on to numerous offspring by chance.
Over a period of time, many individuals with that certain
allele can become common in the given population.
Population bottleneck occurs when a sudden
sharp decline in the population (usually from natural
disasters such as volcanic activities and strong weather
disturbances) results in a drastic reduction of the total
genetic diversity of the original population. The surviving
population is considerably different from the original
population in terms of genetic makeup. Figure 7 shows
that the current genetic makeup of a certain population
will come from the organisms that have survived the
bottleneck effect. Figure 7. The bottleneck effect.
Founder effect happens when there is loss of genetic variation because of the migration
of a small subgroup in a population. Due to the small population size and the geographical or
social isolation of the population from other organisms of the same species, some genetic traits
prevalent in the subgroup may lead to the presence of certain genetic diseases in the next
generation. Figure 8 shows the migration of red beetles in an island, which resulted in a
completely different genetic structure of the red beetles. The migration of red beetles caused a
new population that does not represent the genetic diversity of the original red beetle population.
If the species that migrated carries a specific genetic disease, then that disease can be passed
on from one generation to another.
Mutation
Mutation is change in the structure of a gene caused by alterations in the DNA sequence
of an organism. There are different types of mutations according to the mechanism done to the
DNA molecule. The first one is called substitution, which occurs when the genetic codon has
one altered nitrogenous base. Substitution may cause the following effects:
● It may cause changes in the protein structure because the alteration of the codon
causes a change in the amino acid produced.
● It may cause a silent mutation, wherein an unaltered nitrogenous base still produces a
codon that encodes for the same amino acid.
● It may change an amino acid producing codon into a stop codon, causing a formation of
an incomplete protein.
Another type of mutation is called insertion, which is characterized by the addition of an
extra set of base pairs to the genetic material. The third type of mutation, called deletion, occurs
when a set of base pairs in the genetic material is omitted. Insertions and deletions in the genetic
material cause another type of mutation known as frameshift. This happens when the
information is no longer parsed correctly, resulting in the production of useless proteins.
Mutations may occur because of mistakes in the replication of genetic materials or
because of exposure to radiation or chemicals in the environment. Many mutations produce
changes in the phenotype of organisms. Thus, their ability to survive and reproduce in the
environment is already affected.
Mutation may be either neutral or beneficial. A neutral mutation affects the organism's
phenotype but has no impact on its survival or reproduction. One example is the change in the
eye color of an organism. The phenotype is affected but has no impact on the survival of
organisms.
Beneficial mutation, on the other hand, affects the phenotype of organisms, resulting
in an increase in their chances of survival or reproduction. Example, a mutation experiment
done to Escherichia coli allowed it to metabolize citrate, which was not normally done before.
This entirely new ability gave E. coli increased complexity provided by beneficial mutation.
Reflect Upon
What positive changes would you want to be incorporated in your genes? Explain why.
Figure 9. Different types of mutation: (a) substitution (b) insertion (c) deletion.
Colegio de Los Baños – GENERAL BIOLOGY 2 28
Recombinations
Recombination is simply a rearrangement of genes. This process naturally occurs during
the crossing over stage in meiosis, where there is an exchange of DNA between homologous
chromosomes. Crossing over enables the offspring to have new gene sequences, resulting in
variation of traits. Figure 10 shows the events during crossing over in meiosis. In recombination,
a portion of each homologous chromosome is exchanged with one another. Thus, the offspring
inherit chromosomes with partially new sequences of alleles.
Gene Flow (Migration)
Gene flow is also known as migration. This happens when there is transfer of genes
from the gene pool of one population to another. There are two types of migration emigration
and immigration. Emigration happens when organisms leave habitat, and immigration
happens when organisms enter another habitat and live in it. Both types affect the number of
alleles that are present in the population.
An example of gene flow is when some plant species spread their pollen in long
distances to other populations in other places by means of wind, birds, or insects. There is
movement of alleles because the pollen grains that have been sent to long distances are able
to fertilize the plants.
Figure 11. Two different populations demonstrating gene migration during two time periods.
Colegio de Los Baños – GENERAL BIOLOGY 2 29
ANSWER SHEET (Please submit only the answers. Do not return the entire module.)
ENGAGEMENT (WEEK 4)
Enabling Assessment Activity No.3. MECHANISMS OF EVOLUTIONARY CHANGE
1. Small lizards have difficulties defending their territories, but large lizards are likely to
be preyed upon by owls.
Type of selection:______________________________________________________
Possible reason:_______________________________________________________
2. Females may suffer complications when giving birth to very large offspring. When
they give birth to small offspring, they are usually underdeveloped.
Type of selection:______________________________________________________
Possible reason:_______________________________________________________
4. Hawaiian honeycreepers tend to have long and slender beaks to get the nectar of
the flower better than those who have short and wide beaks.
Type of selection:______________________________________________________
Possible reason:_______________________________________________________
5. Seed-eating birds in Palawan may only have either large or small beak sizes.
Type of selection:______________________________________________________
Possible reason:_______________________________________________________
___________________________________________________________________
SIGNATURE OVER PRINTED NAME OF PARENT/GUARDIAN
DATE: ______________
Colegio de Los Baños – GENERAL BIOLOGY 2 30
PRE-REQUISITE ASSESSMENT
Learning Materials: Module, pen, paper, old biology books, internet (if applicable)
Pre-requisite Content-knowledge: Evolution
Pre-requisite Skill: Knowledge on the different types of theories related to the evolution of the
species
INTRODUCTION
A. TIME ALLOTMENT: 4 hours
B. CONSULTATION: For questions and clarifications, you may consult your subject
teacher on the assigned schedule via face-to-face, FB messenger, mobile number.
C. RUA: At the end of the lesson, you should be able to
1. Trace the development of evolutionary thought;
2. Explain evidences of evolution (e.g., biogeography, fossil record, DNA/protein
sequences, homology, and embryology); and
3. Infer evolutionary relationships among organisms using the evidence of evolution.
D. INSTITUTIONAL VALUES: Critical Thinking and Scientific Literacy
E. OVERVIEW OF THE LESSON
. This lesson explains the earliest evolution, from the timeline and development of
evolutionary thought to the relationships among organisms using the evidence of evolution.
17th Century
Scientist Ideas/Concepts/Contributions
18th Century
19th Century
Colegio de Los Baños – GENERAL BIOLOGY 2 32
Scientist Ideas/Concepts/Contributions
Every time he travelled, Darwin read scientific books, collected plant and animal
specimens as evidence, and recorded many of his observations, which served as hypotheses
on how life changes over time. He was well educated, and he had a strong interest in natural
history that made him excited to study the diversity of life on Earth. His most famous travel
involved a trip to the Galapagos Islands, composed of many small islands located 1000 km
west of South America. The islands have differing climates despite the proximity of the island
with one another. What struck him the most were his observations of several animals that
inhabited the islands. He noted that the characteristics of certain animals, such as the shape of
tortoise shells or the beaks of birds, vary from one island to another. He also found out that the
species present in one location were different from the species found in other locations, and
what seemed like animals that look alike may actually belong to several different species. (e.g.,
mockingbird).
Darwin wrote and published a book entitled On the Origin of Species, in which he
proposed the now famous theory of evolution by natural selection. He then presented pieces of
evidence demonstrating this process, which according to him has been taking place for millions
of years.
Darwin also tried to explain how evolution occurs naturally. With the help of what he
learned from Thomas Malthus, an English economist, Darwin realized that high birth rates and
a storage of life’s basic needs would eventually force organisms into competition for resources.
The struggle for existence means that members of each species compete to obtain food, living
space, and other necessities of life. In this struggle, those that are stronger and faster are able
to hunt for food and protect themselves from their enemies. This struggle for existence was vital
to Darwin’s theory of evolution.
Jean- Baptiste Lamarck and His Theory of Evolution
Jean-Baptiste Lamarck, a French naturalist, was one of the first scientists to recognize
that living things have changed over time. He proposed that all species descended from other
species. In 1809, Lamarck published his theory of how organisms changed over time. His main
ideas included that through selective use or disuse of organs, organisms may acquire or lose
certain traits during their lifetime. Additionally, those traits that have been acquired can be
passed onto the next generation. Over time, this process led to changes in a species.
Figure 2. The elongation of the giraffe’s neck according to the theory of use and disuse
Colegio de Los Baños – GENERAL BIOLOGY 2 34
Further, the theory of disuse states that if an animal chooses not to use its body part,
that body part or organ would eventually decrease in size for several generations until it finally
disappears. An example of this is the vestigial limb structures found in snakes. Shown in Figure
3 are the spurs, or vestigial limbs of the snakes. According to the theory of disuse, because
ancestral snakes did not use their feet, these body parts eventually became underdeveloped.
Vestigial body parts or organs are those that have become functionless in the course of
evolution.
Homology
Another evidence of evolution can be found by studying and comparing certain body
parts of different animals. For example, as seen in Figure 7, the limbs of four modern
vertebrates, including humans, cats, whales, and bats, have bone structures that are quite
similar. These are called homologous structures. Such structures may have different mature
forms, but they came from the same set of embryonic tissues. Some of the limbs shown in the
picture are arms, legs, wings, and even flippers. Even if they may have different functions among
these animals, they are all constructed from the same basic features. This means that each limb
has adapted in ways that allow each organism to survive in different environments.
Embryology
Another evidence is the similarities in the early development of various organisms.
Different organisms have similar structures during their early embryological development. In
Figure 8, four different types of organisms, which almost have the same early stage of
development. The shared embryological development of organisms is responsible for the similar
growth of their homologous structures.
Figure 7. Homologous structures of different organisms Figure 8. Similarities in the embryological structures
The comparative embryology among different species suggests that there is common
ancestry because all the embryos have similar early development stages.
DNA/Protein Sequences
The study of DNA and protein sequences is important for identifying the evolution of
organisms on Earth. In fact, DNA sequencing is the most advanced tool or evidence for
evolution. Similarities in DNA sequences among organisms indicate their close relation with one
another.
By studying DNA sequences, scientists were able to discover that chimpanzees have
DNA that are identical to humans. About one-third of the genes of chimpanzees code for
proteins that are exactly the same as humans. This strongly suggests that humans and chimps
share a common ancestor. Another example can be observed in the DNA sequences of dogs
and wolves, which share many similarities. However, if you compare their DNA sequences to
that of the mouse, you would observe fewer similarities. Note the dogs and mice have
backbones and are mammals. This means that dogs and mice, although distant in relation, may
also share common ancestry.
By comparing DNA sequences, scientists can determine how closely related one
species is with another. Studying DNA and other molecular pieces of evidence makes it easier
to trace the evolutionary history of organisms.
Colegio de Los Baños – GENERAL BIOLOGY 2 37
ANSWER SHEET (Please submit only the answers. Do not return the entire module.)
ENGAGEMENT (WEEK 5)
Mini Performance Task No.2. THE MANKIND FUTURE
Directions: (Group Activity): In 1/8 illustration board, create a drawing regarding the
topic below.
Knowing the pieces of evidence of evolution, how do you see the human
population a million years from now?
Rubrics:
Criteria 5 4 3 2
Required Elements Goes over and above Includes all of the Missing one or more of Several required
all the required required elements as the required elements elements are missing
elements stated in the stated in the as stated in the from the project
directions & directions/instructions directions/instructions
instructions
Creativity Exceptionally clever Thoughtfully and A few original touches Shows little creativity,
and unique in showing uniquely presented; enhance the project to originality and/or effort
deep understanding clever at times in show some in understanding the
showing understanding understanding of the material
of the material material
Understanding of Shows a sophisticated Shows an Displays a somewhat Does not show an
Content understanding of the understanding of the limited understanding understanding of the
themes in the work major themes of the of the book. May have text. Misses plot points
book a few and has quite a few
misinterpretations misinterpretations
Presentation The presentation The presentation The presentation The presentation
provides clear evidence adequately shows shows some evidence shows little or no
of learning evidence of learning but not sufficient evidence of learning.
enough learning.
Colegio de Los Baños – GENERAL BIOLOGY 2 38
PRE-REQUISITE ASSESSMENT
What makes you unique and what makes you similar to your relatives? To your classmates?
Learning Materials: Module, pen, paper, old biology books, internet (if applicable)
Pre-requisite Content-knowledge: Taxonomy
Pre-requisite Skill: Basic knowledge on the types of evidence for species diversity and
cladistic
INTRODUCTION
A. TIME ALLOTMENT: 4 hours
B. CONSULTATION: For questions and clarifications, you may consult your subject
teacher on the assigned schedule via face-to-face, FB messenger, mobile number.
C. RUA: At the end of the lesson, you should be able to
1. Explain how the structural and developmental characteristics and relatedness of
DNA sequences are used in classifying living things;
2. Identify the unique/ distinctive characteristics of a specific taxon relative to other
taxa; and
3. Describe species diversity and cladistics, including the types of evidence and
procedures that can be used to establish evolutionary relationships.
D. INSTITUTIONAL VALUES: Critical Thinking and Scientific Literacy
E. OVERVIEW OF THE LESSON
. This lesson is about how structural and developmental characteristics of DNA
sequence are used in classifying organisms and the evidences used to establish
evolutionary relationships. It also discusses the significant contribution of scientists in
taxonomy.
Phylogeny
Classification systems used by modern taxonomists are based on many evolutionary
clues. These clues do not only come from the internal and external anatomy of organisms-they
also include patterns of embryological development and molecular biochemistry. Organisms are
now grouped into categories that present lines of evolutionary descent. In this modern approach,
species placed within the same genus should be more closely related than to species of any
other genera. Genera placed within a family should be more closely related than to members of
any other families. The same is true for all the other taxonomic levels, including kingdoms. The
natural system of classification based on the evolutionary history or genealogy shared by a
group of organisms is known as phylogeny.
The phylogeny of organisms can be traced using phylogenetic trees. Phylogenetic
trees show the evolutionary relationships of organisms based on the best available pieces of
evidence. They are like the family tree used to trace the lineage of a person to his or her set of
ancestors. The information gathered on an organism and its relatives affect the accuracy of the
phylogenetic tree.
Cladistics
Cladistics is an analytical method of refining the evolutionary classification of
organisms. It involves identifying shared derived characteristics. These characteristics are traits
that evolved in only one species and are present only in its descendants.
Shared derived characteristics can be shown in a cladogram. A cladogram is a diagram
that represents the evolutionary relationships among organisms. An example of a cladogram is
shown in Figure 1. Notice that the cladogram has a five-branch pattern. It simply reflects an
important assumption that existing groups of organisms are divided into five kinds as a new kind
of organism arises. The branching lines in a cladogram represent evolutionary lineage. For
example, for the trait “eggs with shells”, only crocodiles and birds are included. You will see that
they came from an ancestor with vertebrae.
Colegio de Los Baños – GENERAL BIOLOGY 2 42
Another way of looking into the cladogram is by noting the lengths of its branches. The
length of each branch signifies the length of time in producing a change in characteristics. These
lines and their corresponding lengths can be thought of as timelines that indicate when a
particular characteristic emerged, or when a particular lineage deviated from the common
ancestor. Cladograms are tools that help scientists understand how one linage branched from
another in the course of evolution.
Binomial Nomenclature
Carl Linnaeus (or Carolus Linnaeus) offered
the first comprehensive, consistent, and much simpler
method of naming and organizing species, which is
now called binomial nomenclature. The binomial
nomenclature is a two-word naming system used to
name a species. In this naming system, each species
is assigned a two-part scientific name, wherein the first
word is capitalized, and the second word is set in
lowercase. For example, the Philippine crocodile, also
known as the Mindoro crocodile, has the scientific
name Crocodylus mindorensis. Figure 2. Lolong, largest Philippines crocodile.
Colegio de Los Baños – GENERAL BIOLOGY 2 43
The first part of the scientific name of the crocodile is Crocodylus. This represents the
genus to which the organism belongs. A genus is a group of closely related species. The genus
Crocodylus includes other kinds of crocodiles, including its extinct species.
The second part of the scientific name of crocodile is mindorensis. The name is unique
to the species within the genus Crocodylus. The second name is called the specific epithet. It
describes an important trait or the location where the organism lives. The specific epithet
mindorensis means that the crocodile in Figure 2 was originally found in Mindoro, Philippines.
The scientific name is sometimes followed by the name of the author or scientist who
first gave the scientific name of the species. Different ways are used to name organisms, such
as descriptive names, ecological names, geographical names, and even names without any
definite meaning. To summarize, here are things to note when creating an organism’s specific
epithet:
1. The specific name may portray the organism’s major characteristics or its common
local name. One example is the common cat (Felis catus). The specific epithet catus
means that the species is a domesticated cat.
2. The locality, collector, or eminent person can be used in the specific epithet. For
example, Phyllium bonifacioi is a leaf insect species found in the Philippines. It bears the
name of the Filipino revolutionary hero Andres Bonifacio. This species is the latest
addition to the genus Phyllium, one of the four genera of the family Phylliidae.
3. The specific epithet may be used to describe some of the characteristics of the
species. For example, Dendronotus albus is the scientific name of a sea slug, which is
a marine gastropod. The specific epithet albus is a Latin word that means “white”. The
sea slug’s scientific name is based on its color.
4. The specific epithet may also be an ecological name, or the habitat to which the
organism was first observed. For example, Ixora philippinensis is commonly known as
the Philippine santan. Its specific epithet, philippinensis, indicates that it can be found in
the Philippines. This santan species is an evergreen shrub that can be specifically found
in the forests of central and southern Luzon.
Figure 3. Felis catus Figure 4. Phyllium bonifacioi Figure 5. Dendronotus albus Figure 6. Ixora philippinensis
Figure 8 shows an example of the seven taxa used in the Linnaean system of
classification. This is still the basic framework used by taxonomists today.
Colegio de Los Baños – GENERAL BIOLOGY 2 45
Three-domain System
In 1990, further technological advancements such as genetic sequencing led Carl
Woese to discover that Kingdom Archaebacteria and Kingdom Eubacteria are genetically
distinct from each other. These two groups are so distinct that they should not even be classified
together as kingdoms under Empire Prokaryota, but as under separate domains. This enabled
him to establish the three-domain system of classification, which replaced the two-empire
system. These domains are considered as the main branches of a universal common ancestor
that existed since the beginning of life and reflects the current evidence of evolutionary
relationships among various organisms.
The domain classification system is based on molecular analyses, primarily from the
sequencing of genes. Looking at Figure 9, note that Domain Bacteria and Domain Archaea
diverged early on in the evolution of life. They are the most ancestral in form. Domain Eukarya
branched off from the lineage of Archaea, leading to an enormous variety of life-forms. Domain
Bacteria Includes Kingdom Eubacteria; Domain Archaea includes Kingdom Archaebacteria; and
Domain Eukarya includes Kingdoms Plantae, Protista, Animalia, and Fungi.
Domain Bacteria
The members of Domain Bacteria are the organisms under
Kingdom Eubacteria. They are unicellular, prokaryotic organisms.
They have thick and rigid cell walls composed of a substance
known as peptidoglycan. The organisms under this domain are
ecologically diverse-they can be found in the soil, the atmosphere,
your intestines, and even on your skin. Some can produce food
through photosynthesis. Some of them thrive in the presence of
oxygen. Most are beneficial to humans, but some are harmful and
pathogenic. Escherichia coli, a representative organism under this
domain, is shown in Figure 10. Escherichia coli are a Gram-
negative, rod-shaped bacteria commonly found in the lower
intestines of warm-blooded organisms. Most of their strains are
harmless, but some can cause serious food poisoning when they Figure 10. Escherichia coli.
contaminate food.
Domain Archaea
Members under Domain Archaea include Kingdom
Archaebacteria. Like the organisms under Domain Bacteria, all of
its members are unicellular and prokaryotic. They have cell walls
that lack peptidoglycan, and their cell membranes have lipids that
are not found in other organisms. Members of this domain live in
extreme environments such as volcanic hot springs, brine pools,
black organic mud, and even the Dead Sea. Many of the
organisms under Domain Archaea thrive under conditions without
oxygen. Some of these organisms also create their own food
through photosynthesis. An archaebacteria known as
Halobacterium salinarium is shown in Figure 11. There bacteria
are found in environments with high salinity (high concentration of
Figure 11. Halobacterium salinarium
dissolved salts).
Domain Eukarya
Domain Eukarya derives its name from the eukaryotic cells of the organisms included in
this domain. Being eukaryotic is the main feature that unites Kingdom Protista, Fungi, Plantae,
and Animalia into this domain.
Colegio de Los Baños – GENERAL BIOLOGY 2 47
Kingdom Protista
Among all the members of Domain Eukarya, protists are the most biologically diverse.
There are different groups of protists that cannot be classified as plants, animals, or fungi; thus,
they are called plantlike, animal-like, and fungi-like protists. Most protists are unicellular, but
some are colonial or multicellular. Some of them can be photosynthetic. Because of their great
variety, members of Kingdom Protista need more advanced classification.
Kingdom Fungi
Members of Kingdom Fungi cannot make their own food. They can only absorb their
food from their surroundings into their bodies. In doing so, they secrete digestive enzymes into
their food source so they can easily absorb the necessary nutrients. Some are unicellular, but
most fungi are multicellular. The most common fungi are mushrooms. Unicellular fungi include
yeasts.
Kingdom Plantae
Members of
Kingdom Plantae include all
plants. They are
multicellular organisms that
create their own food by
photosynthesis. They
cannot move from one
place to another. They have
cell walls composed of
cellulose. They are very
diverse in size, ranging from
the small mosses to the
large and tall pine trees.
Plats are essential to
humans and other
organisms because they
are used as sources of food,
medicine, and even habitat. Figure 20. Organisms under Kingdom Plantae
Colegio de Los Baños – GENERAL BIOLOGY 2 48
Kingdom Animalia
Members of Kingdom Animalia are multicellular and heterotrophic. Animal cells do not
have cell walls. Most of them can move, although a few are nonmotile in their adult forms such
as sponges. They have various ways of obtaining their nutrition. Many animal species exist in
nearly every part of the planet. The different members under this kingdom are shown in Figure
21.
ANSWER SHEET (Please submit only the answers. Do not return the entire module.)
ENGAGEMENT (WEEK 6)
Enabling Assessment Activity No.4.
SYSTEMATICS BASED ON EVOLUTIONARY RELATIONSHIPS
Directions: Study the figure and answer the following guide questions:
ANSWER SHEET (Please submit only the answers. Do not return the entire module.)
ENGAGEMENT (WEEK 7)
Mini Performance Task No.3. TRAITS AND FEATURES
Basic features (cells and anatomical structures) can also be used to infer relationship
among organisms. The types of cells (prokaryotic or eukaryotic), presence and number
of limbs, presence of wings or hair can be compared to show relationships which can
be plotted in a cladogram.
Spider
Carpenter Ant
(Black)
Fly
Place the organisms above in the cladogram below and indicate the traits that made the
organisms different from each other.
Colegio de Los Baños – GENERAL BIOLOGY 2 51
Quarter 3
Culminating Performance Task
Name: ____________________________________ Section: ______________
DIY FOSSILS
Materials:
A nice-looking fresh leaf Dust mask Hammer
Modeling clay Kitchen gloves Plastic bag
Quick-drying cement Spray adhesive Pushpin
Bucket Sheet of paper
Garden trowel Spray cooking oil
Instruction:
1. Build a clay wall about 2″ high on the smooth surface. Make sure it is large enough to
encircle the leave and provide plenty of space around the leaf.
2. Turn the leaf over. Put the leaf on a sheet of paper or newspaper. Put on the dust
mask, choose a well-ventilated space and spray the entire bottom of the leaf with the
adhesive.
3. Stick the leaf onto the smooth surface inside the clay wall. Try to make the leaf as flat
as possible. After the leaf is glued down, spray the leaf and the inside of the form with
a light coat of cooking oil.
4. Now you’re ready to pour the cement. Put on the dust mask and kitchen gloves. Follow
the directions on the cement box. Use the trowel and mix enough cement to fill the clay
form to the top. Use your hands and the trowel to spread the cement inside the form as
you go along. You need to be working with the cement in the shade, not in the sunlight.
5. When the form is filled to the top, tap around the outside of the clay form with the
hammer. This will cause any bubbles to rise to the surface of the cement. Cover the
wet cement with the plastic. This will help it cure properly. Allow the cement to cure
overnight. Remove the plastic and clay wall.
6. Flip the hardened cement over. Use the pushpin to help remove any of the leaf that
might be stuck to the cement. Once the leaf is removed from the cement, your “fossil”
is complete.