PROTOCOL

for
in vitro culturing of lesion nematodes:
Radopholus similis and Pratylenchus spp.
on carrot discs
D.L. Coyne, O. Adewuyi and E. Mbiru
About IITA

The International Institute of Tropical Agriculture (IITA, www.iita.org) is an Africa-based international

not-for-profit research-for-development organization, established in 1967, and governed by a board of
trustees. IITA is Africa’s lead research partner facilitating agricultural solutions for hunger and poverty in
the tropics. It is a member of the CGIAR Consortium, a global research partnership for a food secure
future.

IITA Ibadan, Nigeria

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© 2014 International Institute of Tropical Agriculture

All rights reserved. The publisher encourages fair use of this material provided proper citation is made.
No reproduction, copy or transmission of this report may be made without written permission of the
publisher.

Correct citation: Coyne, D.L., Adewuyi, O. and Mbiru, E. 2014. Protocol for in vitro culturing of lesion
nematodes: Radopholus similis and Pratylenchus spp. on carrot discs. International Institute of Tropical
Agriculture (IITA), Ibadan, Nigeria. 15pp.

A PDF version of this document is also available on the IITA website.

In vitro culturing of lesion nematodes, 2014 i

FORWARD
This document has been produced by the International Institute of Tropical Agriculture (IITA) in
order to provide a clear and simple, repeatable mechanism to establish and maintain cultures
of lesion nematodes for use as inoculum in experiments.

The manual presents a traditional protocol to culture lesion nematodes for use in screening and
efficacy exercises. The protocol is focused on lesion nematodes, using carrot discs as a food
source/culturing medium. Carrot discs allow the in vitro rearing of high numbers of
Pratylenchus spp. and Radopholus similis, in particular, under sterile conditions to provide a
clean, uniform and pure source of inoculum. The protocol builds upon previous technical
guidelines, such as by Speijer and De Waele (1997), aligning descriptive instructions with visual
figures as much as possible, to create an easy-to-follow guide.

ACKNOWLEDGEMENTS
The authors are grateful to colleagues Inge Van den Bergh and Jenna Ross for assistance, advice
and help in producing this document. The document was produced to support activities
supported by the Federal Ministry for Economic Cooperation and Development (BMZ) Deutsche
Gesellschaft für Internationale Zusammenarbeit (GIZ) GmbH, on behalf of the Government of
the Federal Republic of Germany, within the framework the project: ‘Local Focus: safe and
effective pest and crop management strategies to strengthen the vegetable value chain in the
humid tropics’.

In vitro culturing of lesion nematodes, 2014 ii

CONTENTS

FORWARD..................................................................................................................................... ii

ACKNOWLEDGEMENTS ............................................................................................................ ii

INTRODUCTION .......................................................................................................................... 1

EQUIPMENT AND MATERIALS ................................................................................................ 3

PROCEDURE ................................................................................................................................. 4

1.0 Extraction of nematodes from infected roots ........................................................................ 4

2.0 Preparation of in vitro plant tissue (carrot disc) ................................................................... 6

3.0 Selection and sterilisation of nematodes ............................................................................... 8

4.0 Inoculation of the carrot discs with nematodes .................................................................. 10

5.0 Sub-culturing ...................................................................................................................... 12

REFERENCES AND FURTHER READING.............................................................................. 14

In vitro culturing of lesion nematodes, 2014 iii

INTRODUCTION
Nematodes can feed as migratory ectoparasites and endoparasites, thus their feeding
habits determine the type of plant tissue required for their culture. Nematodes that feed
on vascular tissue, inducing a specific host response, require differentiate tissue for
reproduction in dual callus. This is the case of the sedentary endoparasites Meloidogyne,
Heterodera and Globodera. In contrast, migratory nematodes do not require vascular
elements, and reproduce readily on undifferentiated callus tissue or material, such as
carrot discs. Carrot has been shown to be a suitable medium for nematode multiplication
of a number (though not all) of migratory species.

Economically important nematode species that multiply well and can be cultured in vitro
on carrot discs include Radopholus similis and Pratylenchus spp.: P. brachyurus, P. coffeae,
P. scribneri, P. sudanensis, P. vulnus, P. zeae. Carrot discs enable the rearing of high
numbers of these nematodes for timely use in experiments and for screening purposes
(e.g. O’Bannon and Taylor, 1968; Mudiope et al., 204; Kagoda et al., 2010).

The procedure outlined here provides a descriptive method for multiplying pure cultures
of lesion forming endoparasitic nematodes. The procedure is based on previous
descriptions, but here we avoid using strong sterilants and further, aim to provide a clearly
outlined and visually informative guide, to enable an easy-to-follow procedure. We
describe the recovery of the nematodes from the tissue of plants that the nematodes
naturally infect, the preparation of the nematode extract for inoculation onto carrot discs,
that themselves have been prepared to receive the nematodes. It is necessary to use
sterile techniques and to sterilise the nematodes to prevent contamination during
incubation (3-4 weeks+), which would otherwise destroy the nematode cultures. Some
descriptions use a strong, toxic sterilant, such as mercuric chloride (HgCl 2) or similar, in
addition, or as an alternative to the streptomycin sulphate described here.

We have avoided this however, as these tend to be highly toxic. We find that by carefully
following the sterilisation process and sterile techniques outlined here, the use of

In vitro culturing of lesion nematodes, 2014 1

streptomycin as a sterilant is sufficient and contamination can be limited. Different
nematode populations, however, can vary in their sensitivity to streptomycin sulphate and
so while we present a useful and practical protocol, adaptations may be necessary
depending on the target nematode population and indeed the local conditions.

The initiation and maintenance of in vitro cultures require five steps:

1. Isolating target nematode species. This involves extracting the target species from the
infected source material of roots or plant tissue.
2. Preparation of in vitro plant tissue (carrot discs). Selection, cleaning, peeling and
sterilisation of the carrot to reduce contamination and cutting into discs.
3. Sterilisation of target nematodes. Preparing nematodes to enable the generation of
pure, uncontaminated cultures.
4. Transfer of nematodes to in vitro plant tissue (carrot discs). Inoculating prepared,
sterile nematodes onto carrot discs for incubation in Petri dishes.
5. Culture maintenance through sub-culturing. Regular renewal of cultures.

In vitro culturing of lesion nematodes, 2014 2

EQUIPMENT AND MATERIALS
 Nematode inoculum of target species (e.g. Radopholus similis, Pratylenchus spp.
etc.)
 Small glass /disposable Petri dishes 3-5 cm diam.
 Microscope (e.g. compound or dissection microscope)
 Paper towel/kitchen paper/milk filter
 Measuring cylinder and beaker
 Incubator
 Laminar flow cabinet
 Autoclave
 Blender
 Analytical balance
 Sink with running water
 Sterilized distilled water
 Glass block
 Streptomycin sulphate
 70%, 96% Ethanol
 Aluminum foil
 Pasteur pipette
 Parafilm
 Surgical gloves
 Canister can
 Sterile forceps
 Sterile vegetable peeler
 Sterile knife
 Spirit lamp or Gas lamp
 0.2 µm microfilter
 Wash bottle
 Raw carrots

In vitro culturing of lesion nematodes, 2014 3

PROCEDURE
1.0 Extraction of nematodes from infected roots
1. Choose infected tuber/roots for extraction of the target nematode species to be
cultured, such as the necrotic banana root below left, pre-identified as being caused by
Radopholus similis (burrowing nematode), or maize roots infected with Pratylenchus zeae.

2. Chop up the roots/tuber cortex/plant tissue with a knife on a chopping board or with
scissors, and weigh out a sub-sample (e.g. 5 g).

3. Prepare a modified extraction plate using a plastic sieve lined with milk filter/tissue
paper for nematode extraction and place the chopped root material into the centre of the
tissue paper inside the sieve.

In vitro culturing of lesion nematodes, 2014 4

4. Carefully pour water under the sieve onto the collection plate where it will soak up into
the paper and root material. Ensure there is sufficient water for the root sample to remain
fully submerged for 12-48 hours.

5. Carefully remove the sieve from the collection plate after the extraction period and pour
the nematode extraction from the collection tray into a beaker/cup.

6. Label beakers clearly with details, such as date, sample name, location. Leave samples to
settle until ready to use, then reduce the excess volume by carefully decanting the excess,
or pouring through a 28 µm (or similarly small) aperture sieve. Rinse with distilled water
and collect into a beaker.

7. Keep nematodes in a beaker or tube in distilled water until required, but without leaving
for too long. Preferably use within one day. Store overnight on the bench or in the fridge.

In vitro culturing of lesion nematodes, 2014 5

2.0 Preparation of in vitro plant tissue (carrot disc)
1. Select clean, unblemished carrots with a cylindrical rather than tapering shape. Carrots
should be without cracks and not overly thick. Choose a cultivar that is less succulent (e.g.
cv. Nantes), which tend to be less susceptible to rot during incubation compared with less
dense, more succulent types.

2. Wash selected carrots under running water and clean off any soil or debris. Then clean
with sterilised distilled water before use.

3. Sterilise plenty distilled water, tools, Petri dishes, glass blocks, glass plate, kitchen paper
and Pasteur pipettes by autoclaving at 121˚C for 15 minutes. Cover distilled water and
wrap tools and materials with aluminum foil.

4. Open the laminar flow cabinet and swab down the surface with 70% ethanol to sterilise
the working surface. Then sterilise the tools and tongs by dipping in or spraying with
ethanol and flaming over the spirit lamp.
NB: use 96% ethanol for the spirit lamp, which has a longer flaming span than 70%.

In vitro culturing of lesion nematodes, 2014 6

5. Inside the laminar flow sterilise the carrot by flaming. Hold the carrot with the sterilised
tongs /forceps, spray it with 70% ethanol and flame over spirit lamp. Repeat this two more
times. Sterilise equipment (forceps, peeler and knife) with ethanol and flaming each and
every time the equipment is used.

6. Working on the autoclaved paper towel and glass plate, remove the crown end of the
carrot with a sterile knife and dispose of it; do not use the crown end for inoculation. Peel
the carrot with the sterilised vegetable peeler. Sterilise knife and peeler after every use.

7. Cut the peeled carrots into 0.5 cm thick sections of 3-4 cm diam., using the sterile knife.
Discs must not be less than 2 cm diam. Sterilise the knife after cutting each disc. Using the
sterilised forceps transfer the cut carrot discs into sterilised glass or sterile disposable Petri
dishes (3-5 cm diam.) and cover. Sterilise the forceps after each transfer.

***NOTE: use of glass Petri dishes tend to result in lower rates of contamination***

In vitro culturing of lesion nematodes, 2014 7

3.0 Selection and sterilisation of nematodes
1. Place a concentrated volume of the nematode extract into a small (3-5 cm diam.) Petri
dish under a dissecting microscope. Use a fine pick or bamboo splinter to ‘fish’ (pick) 60-
100 nematodes – but this depends on how many carrots are to be established/ required.
Select only females of the target species of nematode and place them into a glass block
containing sterile distilled water. If only a few nematodes are available, juveniles may also
be selected. Place a cover slide over the glass block and store carefully on the bench until
ready for use.

2. Swab down the laminar flow with 70% ethanol then transfer the picked nematodes from
the glass block using a sterile pipette into a sterilised glass measuring cylinder containing
10 ml of sterile distilled water.

3. Weigh out 0.06 g (6 mg) of streptomycin sulphate onto sterile aluminum foil.

In vitro culturing of lesion nematodes, 2014 8

4. In the laminar flow transfer the 6 mg of streptomycin to the glass measuring cylinder
containing 10 ml of water, providing 6000 ppm of streptomycin. Gently mix the solution to
dissolve the streptomycin. If available filter the 10 ml streptomycin solution through a 0.2
µm microfilter with a sterile 10 ml syringe, which will further reduce/prevent
contamination, and then transfer to a fresh sterile measuring cylinder.

5. Allow the nematodes to settle to the bottom in the measuring cylinder for about 1 hour.
With a micro-Pasteur pipette reduce the volume in the measuring cylinder from the
surface, to about 5 ml, taking care not to disturb or remove the nematodes at the bottom.
From the prepared 10 ml streptomycin solution, pipette 5 ml into the nematode
suspension to surface sterilise the nematodes and reduce contamination. Leave for
another 1 hour to settle, then reduce the volume again, replenish with sterilised distilled
water to 10 ml and leave for 1 hour. Repeat the process for a third time, leave for 30 min
and finally reduce the volume to 2-3 ml.

**NB: streptomycin concentration can be increased if contamination is experienced, or

reduced if nematodes are weak and dying; adapt according to local conditions.

***NOTE: Reduction of surface

water should be carefully
conducted so as not to disturb and
remove nematodes***

In vitro culturing of lesion nematodes, 2014 9

4.0 Inoculation of the carrot discs with nematodes
1. Retrieve the Petri dishes with the prepared carrot discs and place in the laminar flow
cabinet. Place the surface-sterilised nematodes from the measuring cylinder close at hand
and using a sterile Pasteur micropipette transfer them onto the surface of the carrot.

2. Gently place small drops of nematode suspension onto the margin/edge of the carrot
discs. The aim is to transfer the nematodes in as little water as possible; the smaller the
drops the better. Aim to deliver 15-50 nematodes per disc in a maximum of three drops of
nematode suspension per carrot disc. The number of nematodes in the suspension will
determine the number to transfer. This is a good number for culture maintenance. For
mass multiplication though, use about 100-150 nematodes. Replace the Petri dish lid and
continue with the next carrot disc.

3. Seal the Petri dishes containing inoculated carrots with Parafilm and label accurately.
Labels should include the date of inoculation, nematode species, origin, crop of origin.

In vitro culturing of lesion nematodes, 2014 10

4. In the laminar flow cabinet place the Petri dishes with the inoculated carrot discs into a
canister or plastic box. This helps to prevent mite infection. Place the canister in an
incubator for 3-4 weeks at 25-28°C – although the temperature depends on the species to
culture. Incubation in the dark is also necessary to replicate underground conditions. Check
the discs periodically and dispose of any discs that are contaminated. Callus (whitish
matter) occurring on the surface of the carrot discs is a good indicator of healthy cultures
during incubation.

5. After 3-4 weeks, check for nematodes emerging onto the surface of the carrot or
collecting on the Petri dish glass surface around the edges of the carrot. Do this by placing
the dish under a dissection microscope without removing the Parafilm or the lid.
Nematodes will begin to exit the carrot when nutrients start to become depleted and at
this point the nematodes are ready for harvesting. This can continue over a number of
weeks until the carrot is fully depleted and then needs sub-culturing.

In vitro culturing of lesion nematodes, 2014 11

5.0 Sub-culturing
The initial inoculum and the nematode species or strain, will affect how soon the nutrients
become depleted and initiate nematode migration from the carrot. Incubation time will
vary with the aggressiveness of the nematode species or strain being cultured – e.g. some
strains of R. similis can take just 3-4 weeks but other, less aggressive, populations can take
up to 1-2 months before they emerge. For P. zeae and P. sudanensis incubation time tends
to last 3 months before nematodes emerge (Mudiope et al., 204; Kagoda et al., 2010).
Once the nematodes emerge, they can be harvested for experimental purposes or sub-
cultured for maintenance if there is no immediate use.

When required for an experiment, emerging nematodes can be rinsed from the Petri dish
and from off the carrot surface into a collection beaker, using a water bottle.

The nematodes can be harvested and stored in the fridge at 4oC until ready for use,
preferably within 1 week, so that nematodes remain fresh. The nematodes can, however,
remain viable for up to 2-3 weeks. To rinse nematodes from the carrot cultures it is
essential to work inside the laminar flow cabinet, and use the sterile techniques described
above in Sections 3.0 and 4.0. Remove carrot discs with sterilised tongs and rinse the
carrot with sterile distilled water over a beaker. Place the carrot disc back into the Petri
dish, replace the lid and re-apply the Parafilm around the Petri dish. Repeat the process
with the remaining carrot discs, bulking the nematodes in the beaker. Store the harvested
nematodes in the fridge at 4oC.

Nematodes will continue to emerge from the carrot disc provided that a food source
(nutrients) remains available. This can be observed from the color of the carrot which
gradually changes from the original orange, to a brownish color, at which point it is
necessary to sub-culture.

Remove the carrots from the incubator to sub-culture the nematodes onto fresh carrot
discs. For sub-culturing, it is best to use those discs from which many nematodes are

In vitro culturing of lesion nematodes, 2014 12

emerging. Prepare the carrot discs according to the procedure outlined in Section 2.0
above.

1. To extract the nematodes from the carrot discs cut the discs into small pieces or chop
roughly and place into a blender and extract nematodes using the method set out above in
Section 1.0.

2. After extraction, collect the nematodes into a beaker and sterilise them according to
Section 3.0 above, followed by the procedure for inoculation onto carrot discs in Section
4.0.

3. Picking the nematodes individually is not necessary when sub-culturing as the culture is
already a pure population. Therefore, collect the nematodes in a beaker, agitate to
equilibrate nematode distribution in the beaker and remove a known aliquot volume (e.g.
1 ml) using a pipette. Place the aliquot into a counting dish and, under the microscope,
count the number of nematodes in order to determine nematode density and the volume
required to transfer to the sterilisation process (Section 3.0). If there are too many
nematodes to count using e.g. 1 ml, then reduce the amount (e.g. 0.5 ml) and add distilled
water to the counting dish to dilute and enable ease of counting. Assess nematode density
using 2-3 separate aliquots and calculate the mean.

In vitro culturing of lesion nematodes, 2014 13

REFERENCES AND FURTHER READING
Coyne, D., Nicol, J. & Claudius-Cole, A. 2007. Practical plant nematology: a field and laboratory
guide. IITA, Ibadan, Nigeria. Pp 82. ISBN 978-131294-7.

Kagoda, F., Coyne, D., Mbiru, E., Derera, J. & Tongoona, P. 2010. Monoxenic Culture of
Pratylenchus Zeae on Carrot Discs. Nematologia Mediterranea 38, 107-108.

Mudiope, J., Coyne, D., Adipala. E. & Sikora, R.A. 2004. Monoxenic culture of the Root-Lesion
Nematode Pratylenchus sudanensis on Carrot Disks. Nematology 6, 617-619.

O'Bannon J.H. & Taylor A.L. 1968. Migratory endoparasitic nematodes reared on carrot discs.
Phytopathology, 58, 385.

Speijer, P.R. & De Waele, D. 1997. Screening of Musa Germplasm for Resistance and Tolerance
to Nematodes. INIBAP, Montpellier, France. Pp. 47. ISBN 2-910810-16-X.

In vitro culturing of lesion nematodes, 2014 14