2022 Griese Etiologic Classification of Diffuse
2022 Griese Etiologic Classification of Diffuse
2022 Griese Etiologic Classification of Diffuse
Clinical Medicine
Perspective
Etiologic Classification of Diffuse Parenchymal (Interstitial)
Lung Diseases
Matthias Griese
Department of Pediatric Pneumology, Dr. von Haunersches Kinderspital, University of Munich, German Center
for Lung Research, Lindwurmstr. 4a, D-80337 Munich, Germany; [email protected]
Abstract: Interstitial lung diseases (ILD) or diffuse parenchymal lung diseases (DPLD) comprise
a large number of disorders. Disease definition and classification allow advanced and personalized
judgements on clinical disease, risks for genetic or environmental transmissions, and precision
medicine treatments. Registers collect specific rare entities and use ontologies for a precise description
of complex phenotypes. Here we present a brief history of ILD classification systems from adult and
pediatric pneumology. We center on an etiologic classification, with four main categories: lung-only
(native parenchymal) disorders, systemic disease-related disorders, exposure-related disorders, and
vascular disorders. Splitting diseases into molecularly defined entities is key for precision medicine
and the identification of novel entities. Lumping diseases targeted by similar diagnostic or therapeutic
principles is key for clinical practice and register work, as our experience with the European children’s
ILD register (chILD-EU) demonstrates. The etiologic classification favored combines pediatric and
adult lung diseases in a single system and considers genomics and other -omics as central steps
towards the solution of “idiopathic” lung diseases. Future tasks focus on a systems’ medicine
approach integrating all data and bringing precision medicine closer to the patients.
Keywords: children’s interstitial lung disease (chILD); human phenotype ontology; interstitial
pneumonia; interstitial pneumonitis; idiopathic interstitial fibrosis; familial; surfactant; classifica-
tion; categorization
Citation: Griese, M. Etiologic
Classification of Diffuse Parenchymal
(Interstitial) Lung Diseases. J. Clin.
Med. 2022, 11, 1747. https://doi.org/ 1. Introduction
10.3390/jcm11061747
Disease definition and classification play an important role for progress in human
Academic Editor: Francisco Dasí health. The taxonomies used directly reflect the underlying principles for best diagnosis,
treatment, and prophylaxis. The more precise the underlying complexities are studied,
Received: 30 December 2021
and this knowledge links to the disease of the individual, the better judgements on disease
Accepted: 18 March 2022
course, prognosis, and risks for genetic or environmental transmissions are targeted in
Published: 21 March 2022
personalized precision medicine.
Publisher’s Note: MDPI stays neutral A few decades ago, drugs with similar actions, e.g., different ß-blockers or inhaled
with regard to jurisdictional claims in steroids with only minor modifications, for usage in common diseases such as hyperten-
published maps and institutional affil- sion, asthma, and COPD dominated the progress in medicine. Currently, exploitation of
iations. molecularly well-defined, mostly rare diseases is in the center of rapid developments of
novel, targeted treatments. Detailed pathway knowledge and hypothesis-free approaches
make so far only symptomatically treatable conditions now drugable. An example is the
small molecule medications used in cystic fibrosis, making a substantial correction of the
Copyright: © 2022 by the author.
underlying genetic CFTR defect possible [1,2].
Licensee MDPI, Basel, Switzerland.
This article is an open access article
Splitting diseases into smaller and smaller entities is key for precision medicine. Nev-
distributed under the terms and
ertheless, the smart merging of etiologically similar diseases into categories (lumping)
conditions of the Creative Commons
allows targeting of similar diagnostic or therapeutic principles and more convenient mem-
Attribution (CC BY) license (https:// orizing in clinical practice. Such developments occur in subspecialty niches at a rapid pace.
creativecommons.org/licenses/by/ Specialized registers nicely capture the rich spectrum of individuals with their disease
4.0/). and can then build growing cohorts of well-defined novel entities. At the same time, such
registers make the disease collections open to computerized ontologies and integration of
translational multi-omics and precision medicine.
Here, we summarize the development and practice of categorization systems in the area
of diffuse lung diseases from the experiences made in the children’s lung register/chILD-EU
register, a European pediatric rare lung disease register and biobank [3]. In the context of
current etiologic disease categorization, we discuss some issues of everyday interest and set
the stage for future developments for the integration of physicians’ and systems’ biology
scientists’ needs in an age-overarching approach.
Figure 1. Overview of interstitial (diffuse parenchymal) lung diseases and their neighbors. Diffuse
lung diseases involve the entire lungs, i.e., from base to top, peripheral to central, and front to
back. Many airway disorders, including COPD, asthma, and cystic fibrosis, can be diffuse, whereas
others remain more localized; few pleural diseases, gross structural abnormalities such as congenital
pulmonary malformation type 0, or pleural disorders are diffuse. The numerically largest group of
diffuse lung diseases are the interstitial (diffuse parenchymal) lung diseases (ILD). These consist of
four large etiologic categories of diseases, affecting the lung interstitium or parenchyma, (1) the lung-
only (native parenchymal) disorders, (2) the systemic disease-related disorders, (3) exposure-related
disorders, and (4) the vascular disorders. ILDs from all age groups are included.
Table 1. Compilation of classifications of interstitial lung diseases (ILDs) or diffuse parenchymal lung diseases (DPLDs).
Table 1. Cont.
investigated in children and most of the strategies applied by pediatricians were linked to
studies in adult patients [14]. Basically, the categorization scheme presented was similar to
that of the 2002 adult statement, except that “congenital disorders” were added as a new
group and several other important pediatric entities were listed under “Other forms of
interstitial pneumonia”. To the latter belonged alveolar proteinosis, eosinophilic pneumo-
nia, infantile/idiopathic hemosiderosis, persistent tachypnea of infancy, and pulmonary
interstitial glycogenosis. Although very heterogeneous, these entities made up a decent
fraction of ILD in children. Of importance, genetically defined surfactant dysfunction
disorders (SP-B, SP-C deficiency), forms of familial cryptogenic fibrosing alveolitis, and
molecularly well-defined syndromes such as Hermansky–Pudlak syndrome or IPPs due to
inborn errors of metabolism were added. This was a remarkable advance, going beyond
the adult classification systems.
In 2007, a mainly pathology-based classification scheme for diffuse lung disease in
children under the age of 2 years was published [15]. It was based on the analysis of
187 cases with lung biopsy. The most prominent feature was the clearer separation of
four categories of disorders more prominent in infancy from the other disorders (Table 1).
Among these disease categories were disorders of early lung development. If they affected
the entire lungs, they were called diffuse developmental disorders [15]. Such disorders lead
to severe structural and functional lung abnormalities and are often lethal, with typical
examples being alveolar capillary dysplasia with misalignment of the pulmonary veins,
acinar dysplasia, and congenital alveolar dysplasia [16]. Conditions that only affect proper
development of the alveoli were collected under the term growth abnormalities reflecting
deficient alveolarization. Examples were infants with trisomy 21, pulmonary hypoplasia, or
chronic lung disease of prematurity (BPD). The third group was difficult to appreciate and
called “specific conditions of undefined etiology”. It contained two, histological diagnosis
pulmonary interstitial glycogenosis and neuroendocrine cell hyperplasia of infancy. The last
group contained disorders suggestive of a metabolic abnormality in surfactant metabolism,
the surfactant dysfunction disorders. More than 10% of the biopsies were excluded as
insufficient and were collected under the label “unclassifiable”. Thereafter, the system was
successfully applied to 259 diagnostic biopsies [17].
In 2009 and 2015, this classification system was utilized and expanded to all cases
of chILD, irrespective of whether a histopathological diagnosis was available or not and
irrespective of the age of the child. To accommodate cases that could not be resolved, addi-
tional categories such as unclear respiratory distress in the mature neonate (group Ax), the
almost mature neonate (group Ay), and in the non-neonate (group Bx) [18,19] were added.
Another important change was the removal of the category “disorders masquerading as
ILD” and the introduction of DPLD related to lung vessels’ structural processes (B4) and
DPLD related to reactive lymphoid lesions (B5). Due to the large number of 861 chILD
cases assessed, a very broad spectrum of ILD was accommodated and some entities were
expanded (DPLD in the presumed immunocompromised host or transplanted (B3)) or refo-
cused (DPLD in the presumed immune intact host, related to exposures (B2)). Importantly,
this study established and empirically tested a workflow of the pediatric ILD categorization
system. The steps included the generation of a final working diagnosis, the decision on the
presence or absence of ILD, the decision if the condition assessed was part of a systemic
condition or related solely to the lung, and, lastly, the allocation to a predefined disease
category and subcategory. Blind re-testing of a random sample set by two independent
raters allocated more than 80% of the re-categorized cases identically. Non-identical al-
location was due to a lack of appreciation of all available details, insufficient knowledge
of the classification rules by the raters, incomplete patient data, and shortcomings of the
classification system itself [19].
The French network for pediatric interstitial lung diseases published in 2012 their
database categorization system [20]. The categories were linked to the initial ERS scheme
from 2004 and accentuated separately granulomatous diseases, metabolic disorders, and
infectious ILD.
J. Clin. Med. 2022, 11, 1747 8 of 19
Such an expansion of the categories was in line with the 2013 published expansion
of the chILD classification, based on the histopathological evaluation of 229 biopsies, of
which more than 50% were obtained beyond the age of 2 years [21]. The authors added
the categories lymphoproliferative disease, small airways disease, interstitial pneumonias
unrelated to surfactant protein deficiencies, and other patterns of diffuse lung disease.
An important additional notion from this study was the observation that many cases
showed mixed histological patterns. Often overlap between groups of disorders more
prevalent in infancy were seen. Similarly, patients with a major histological pattern associ-
ated with surfactant protein disorders had various minor patterns, including hypoplasia,
CPI, DIP, PAP, ELP, NSIP, PH, PIG, or cholesterol pneumonitis.
In 2015, Kitazawa and Kure contributed the Japanese experience. They argued strongly
in favor of an etiological classification system [22]. Additionally, in 2015, the team from
the children’s interstitial and diffuse lung disease research network applied their chILD
classification scheme from 2007 to children with diffuse lung disease and biopsied between
the age of 2 to 18 years [23]. They introduced at front a central clinical decision, i.e., was
the patient clinically immune compromised or immune competent? This decision may be
difficult in everyday practice, as it is often not easily determined [24]. Also in 2015, Armes et al.
detailed a pattern-based, algorithmic approach to histological diagnosis of chILD [25]. They
stressed and broadened the significance of hypertensive disease as an important component
of diffuse lung disease in children. Although several authors have used the 2007 chILD
classification system with no or little adaptations [26–28], recently it became more and more
clear that a new classification of childhood diffuse lung diseases is needed [29].
Figure 2. Diagnostic algorithm for the identification and etiologic classification of ILD.
Table 2. Classification of interstitial lung diseases (ILDs) used in the chILD-EU register (full list
available www.childeu.net, accessed on 29 December 2021).
Table 2. Cont.
- Infectious/post-infectious
Infectious bronchiolitis obliterans (PIBO) - Mac-Leod-Swyer-James-Syndrome
- Diffuse panbronchiolitis
- Diffuse pulmonary (alveolar)
hemorrhage (DPH) - Pulmonary capillary
- Idiopathic pulmonary hemorrhage hemangiomatosis (PCH)
Vascular disorders
(hemosiderosis) (IPH) with or without - Pulmonary vena-occlusive disease
associated features - Lymphangiomatosis
- Pulmonary capillaritis
The “lung-only” conditions may occur at all ages and, nevertheless, are likely to
have strong genetic etiology factors, as yet unknown to a large extent. Recently, several
conditions previously thought to exclusively occur in childhood, e.g., SFTPC or ABCA3
deficiency, have been demonstrated to occur at all ages [32]. Up to now, in adults these
conditions were lumped under interstitial idiopathic pneumonias (Table 1). Future investi-
gations of the biology will help define etiologic entities (see Section 6).
Although having a prominent pulmonary phenotype, many ILDs are systemic disease-
related disorders (Table 2). This is a large group and contains well-known conditions
such as collagen vascular disorders (CTD-ILD), sarcoidosis, antisynthetase syndrome, or
granulomatosis with polyangiitis (GPA, Wegener). Increasing molecularly well-defined
entities including aminoacyl-tRNA synthetase deficiencies [33], Birt–Hogg–Dube syndrome,
brain-thyroid-lung syndrome, small patella syndrome (TBX4 mutation), telomere-related
diseases [34], or ZNFX1 deficiency are differentiated [35]. Patients in this group may be
J. Clin. Med. 2022, 11, 1747 11 of 19
Figure 3. Etiologic disease classification of ILDs drives diagnostic and treatment opportunities. The
integration of more and more disease-related data from deeper analysis and systems’ medicine will
result in personalized medicine, allowing more precise diagnosis and treatment.
pediatric histopathologic expertise [3]. Registers also serve as very important and efficient
tools to assess diagnostic and therapeutic needs of rare disease entities and to prepare
for clinical trials therein. Such analyses are of particular interest for collaborations with
industry, e.g., to prepare necessary pediatric investigational plans (PIP).
In the context of this paper, an important problem all registers face concerns the dis-
ease classification schemes used in their repositories. In particular, when linking the data
for common analyses it is necessary to map the diseases and the many descriptors utilized
carefully to avoid comparing apples and oranges. For such purposes, ontologies were
developed. Ontologies are collections of terms that specify the properties of a complex
concept and the relations of the terms. As an example, Ryerson et al. specified a standard-
ized framework to classify the likelihood of a diagnosis for adult fibrotic interstitial lung
disease. They defined the terms “confident”, “provisional with high or low likelihood”,
and “unclassifiable”. This addition of a clinical modifier and other subontologies, such as
clinical course, mode of inheritance, age of manifestation, and frequency, are essential steps
towards deep phenotyping of diseases [49]. The Human Phenotype Ontology (HPO) is
another example of a collection of terms assisting in describing medically relevant pheno-
types so that they are useful for supporting clinical differential diagnosis and translational
research interests [50]. These terms allow bio-informatic computations over the clinical
phenotype and combining those data with the huge amounts of -omics data for precision
medicine. For ILD, we have recently added many novel terms and disease annotations to
the current HPO [51].
diatric pneumologists should also know such conditions to diagnose them early. Therefore,
pediatric specialists in ILD should be included in working groups on ILD classifications or
position statements [53]. Inclusion of the pediatric perspective has been realized to some
extend by the European Respiratory Society in recent task forces on ILDs.
Pursuing an etiology-based classification has many advantages but is not always easy.
In the case of multifactorial etiology, we focus on establishing the most likely etiology in
a given patient. If necessary, we fall back to a phenotypic/descriptive diagnosis, judiciously
using both concepts, the etiologic one improving clinical research as well as serving the
patient in daily clinical practice. Thus, assignment of such cases to any single etiology
may be to an extent arbitrary, but in most cases there is a predominant cause to which
the case is assigned, which is obviously helpful and valuable for many reasons (Table 3).
However, any etiologic classification highly depends on the degree of investigation and
investigatory technology. If clinically indicated but not followed by the appropriate investi-
gations, e.g., chest CT, genetic analysis, lung biopsy, or detailed antibody measurements,
an advanced diagnosis and classification cannot be made. Any effort should be made
for a particular patient to clarify the diagnosis and associated treatment and prognosis.
The suggestions made here are not meant to speak for the world but may be a base for
discussion towards a comprehensive age-overarching classification of diffuse lung diseases
in broad, international, expert consensus groups.
Etiology is the driving force for most progress towards treatment of conditions
Etiology, as the one major criterion, is primarily used for all classification-decisions in the system
Hierarchically simple and universal system, which can be easily memorized on a major level
Flat, two-level structure (four major, primary levels and not branched second level, which can accommodate any large number of
different entities)
Minimizes contradictions often experienced in hierarchical classifications
Open to further subclassification by convenient specifiers and descriptors
Avoids neglect of unclassifiable conditions by also including conditions with currently not exactly known etiology or even for cases
in which the absence of information includes classes as “undefined” or “probable”
Ability to annotate relationships between etiologies at all levels of granularity
The system does not ignore tradition of old classification schemes
Open to all ages, accommodating easily age-specific disease manifestations
Supports closer collaboration of pediatric and adult pneumologists, and, for the patients, an improved transition of grown-ups into
adult medical services
Computational methods may overcome the relatively large number of conditions resulting, which is seen by some as a disadvantage
Computations over phenotype, multi-omics, environmental, or psychosocial data easily possible
Proven applicability in electronic databases of a large ILD register
Usage of standardized collections of terms (ontologies) for merging with other machine-based systems (big data analysis)
Realistically, no single classification will meet all needs. Thus, ongoing efforts for the
integration and merging of equivalent disease concepts are necessary. Different physicians
and researchers annotate the relationships and levels of granularity with which they are
concerned. Computing technology has to merge equivalent concepts by iterative curator-
assisted inference of the different vocabularies. The Mondo Disease Ontology currently does
this approach. Mondo, derived from the Latin word ‘mundus’, meaning ‘for the world’,
aims to harmonize disease definitions across the world (https://mondo.monarchinitiative.
org/, accessed on 29 December 2021).
J. Clin. Med. 2022, 11, 1747 15 of 19
9. Conclusions
We reviewed the development of ILD classifications in pediatric and adult pneu-
mology and suggest an age-overarching etiologic classification of lung diffuse diseases
able to accommodate the conditions in an easily memorable way. Genetic testing needs
to be integrated more and more into the diagnostic algorithms and may help resolving
idiopathic interstitial lung diseases. In particular, the etiologic grouping and longitudinal
observation of the diffuse parenchymal lung diseases in registers may support integrating
the tremendous -omics data becoming available.
Abbreviations
Appendix A
References
1. Middleton, P.G.; Mall, M.A.; Drevinek, P.; Lands, L.C.; McKone, E.F.; Polineni, D.; Ramsey, B.W.; Taylor-Cousar, J.L.; Tullis, E.;
Vermeulen, F.; et al. Elexacaftor-Tezacaftor-Ivacaftor for Cystic Fibrosis with a Single Phe508del Allele. N. Engl. J. Med. 2019,
381, 1809–1819. [CrossRef] [PubMed]
2. Griese, M.; Costa, S.; Linnemann, R.W.; Mall, M.A.; McKone, E.F.; Polineni, D.; Quon, B.S.; Ringshausen, F.C.; Taylor-Cousar, J.L.;
Withers, N.J.; et al. Safety and Efficacy of Elexacaftor/Tezacaftor/Ivacaftor for 24 Weeks or Longer in People with Cystic Fibrosis
and One or More F508del Alleles: Interim Results of an Open-Label Phase 3 Clinical Trial. Am. J. Respir. Crit. Care Med. 2021,
203, 381–385. [CrossRef] [PubMed]
3. Griese, M.; Seidl, E.; Hengst, M.; Reu, S.; Rock, H.; Anthony, G.; Kiper, N.; Emiralioglu, N.; Snijders, D.; Goldbeck, L.; et al. Inter-
national management platform for children’s interstitial lung disease (chILD-EU). Thorax 2018, 73, 231–239. [CrossRef] [PubMed]
4. Schwarz, M.K.; King, T.E. Interstitial Lung Disease, 5th ed.; People’s Medical Publishing House-USA: Shelton, CT, USA, 2011.
5. Kurland, G.; Deterding, R.R.; Hagood, J.S.; Young, L.R.; Brody, A.S.; Castile, R.G.; Dell, S.; Fan, L.L.; Hamvas, A.; Hilman, B.C.; et al.
An official American Thoracic Society clinical practice guideline: Classification, evaluation, and management of childhood
interstitial lung disease in infancy. Am. J. Respir. Crit. Care Med. 2013, 188, 376–394. [CrossRef] [PubMed]
6. Griese, M. Chronic interstitial lung disease in children. Eur. Respir. Rev. 2018, 27, 170100. [CrossRef] [PubMed]
7. American Thoracic, S.; European Respiratory, S. American Thoracic Society/European Respiratory Society International Multi-
disciplinary Consensus Classification of the Idiopathic Interstitial Pneumonias. This joint statement of the American Thoracic
Society (ATS), and the European Respiratory Society (ERS) was adopted by the ATS board of directors, June 2001 and by the ERS
Executive Committee, June 2001. Am. J. Respir. Crit. Care Med. 2002, 165, 277–304.
8. Liebow, A.; Carrington, C.B. The Interstitial Pneumonias, 1st ed.; Simon, M.P.E., LeMay, M., Eds.; Grune & Stratton: New York, NY,
USA, 1969.
9. Travis, W.D.; Colby, T.V.; Koss, M.M.; Rosado-de-Christenson, M.L.; Müller, N.L.; King, T.E. Non-Neoplastic Disorders of the Lower
Respiratory Tract; American Registry of Pathology and the Armed Forces Institute of Pathology: Washington, DC, USA, 2002.
10. Katzenstein, A.L.A. Katzenstein and Askin’s Surgical Pathology of Nonneoplastic Lung Disease; W.B. Saunders: Philadelphia, PA,
USA, 1997.
11. Muller, N.L.; Coiby, T.V. Idiopathic interstitial pneumonias: High-resolution CT and histologic findings. Radiographics 1997,
17, 1016–1022. [CrossRef]
J. Clin. Med. 2022, 11, 1747 18 of 19
12. Travis, W.D.; Costabel, U.; Hansell, D.M.; King, T.E., Jr.; Lynch, D.A.; Nicholson, A.G.; Ryerson, C.J.; Ryu, J.H.; Selman, M.;
Wells, A.U.; et al. An official American Thoracic Society/European Respiratory Society statement: Update of the international
multidisciplinary classification of the idiopathic interstitial pneumonias. Am. J. Respir. Crit. Care Med. 2013, 188, 733–748. [CrossRef]
13. Fischer, A.; Antoniou, K.M.; Brown, K.K.; Cadranel, J.; Corte, T.J.; du Bois, R.M.; Lee, J.S.; Leslie, K.O.; Lynch, D.A.;
Matteson, E.L.; et al. An official European Respiratory Society/American Thoracic Society research statement: Interstitial
pneumonia with autoimmune features. Eur. Respir. J. 2015, 46, 976–987. [CrossRef]
14. Clement, A. Task force on chronic interstitial lung disease in immunocompetent children. Eur. Respir. J. 2004, 24, 686–697. [CrossRef]
15. Deutsch, G.H.; Young, L.R.; Deterding, R.R.; Fan, L.L.; Dell, S.D.; Bean, J.A.; Brody, A.S.; Nogee, L.M.; Trapnell, B.C.;
Langston, C.; et al. Diffuse lung disease in young children: Application of a novel classification scheme. Am. J. Respir. Crit. Care
Med. 2007, 176, 1120–1128. [CrossRef] [PubMed]
16. Vincent, M.; Karolak, J.A.; Deutsch, G.; Gambin, T.; Popek, E.; Isidor, B.; Szafranski, P.; Le Caignec, C.; Stankiewicz, P. Clinical,
Histopathological, and Molecular Diagnostics in Lethal Lung Developmental Disorders. Am. J. Respir. Crit. Care Med. 2019,
200, 1093–1101. [CrossRef] [PubMed]
17. Langston, C.; Dishop, M.K. Diffuse lung disease in infancy: A proposed classification applied to 259 diagnostic biopsies. Pediatr.
Dev. Pathol. 2009, 12, 421–437. [CrossRef] [PubMed]
18. Griese, M.; Haug, M.; Brasch, F.; Freihorst, A.; Lohse, P.; von Kries, R.; Zimmermann, T.; Hartl, D. Incidence and classification of
pediatric diffuse parenchymal lung diseases in Germany. Orphanet J. Rare Dis. 2009, 4, 26. [CrossRef]
19. Griese, M.; Irnstetter, A.; Hengst, M.; Burmester, H.; Nagel, F.; Ripper, J.; Feilcke, M.; Pawlita, I.; Gothe, F.; Kappler, M.; et al.
Categorizing diffuse parenchymal lung disease in children. Orphanet J. Rare Dis. 2015, 10, 122. [CrossRef]
20. Nathan, N.; Taam, R.A.; Epaud, R.; Delacourt, C.; Deschildre, A.; Reix, P.; Chiron, R.; de Pontbriand, U.; Brouard, J.; Fayon, M.; et al.
A national internet-linked based database for pediatric interstitial lung diseases: The French network. Orphanet J. Rare Dis. 2012,
7, 40. [CrossRef]
21. Rice, A.; Tran-Dang, M.A.; Bush, A.; Nicholson, A.G. Diffuse lung disease in infancy and childhood: Expanding the chILD
classification. Histopathology 2013, 63, 743–755. [CrossRef]
22. Kitazawa, H.; Kure, S. Interstitial Lung Disease in Childhood: Clinical and Genetic Aspects. Clin. Med. Insights Circ. Respir. Pulm.
Med. 2015, 9 (Suppl. 1), 57–68. [CrossRef]
23. Fan, L.L.; Dishop, M.K.; Galambos, C.; Askin, F.B.; White, F.V.; Langston, C.; Liptzin, D.R.; Kroehl, M.E.; Deutsch, G.H.; Young,
L.R.; et al. Diffuse Lung Disease in Biopsied Children 2 to 18 Years of Age. Application of the chILD Classification Scheme. Ann.
Am. Thorac. Soc. 2015, 12, 1498–1505. [CrossRef]
24. Griese, M. Pushing chILD Forward: The Bright Future of Children’s Interstitial Lung Diseases. Ann. Am. Thorac. Soc. 2015, 12,
1428–1429. [CrossRef]
25. Armes, J.E.; Mifsud, W.; Ashworth, M. Diffuse lung disease of infancy: A pattern-based, algorithmic approach to histological
diagnosis. J. Clin. Pathol. 2015, 68, 100–110. [CrossRef] [PubMed]
26. Soares, J.J.; Deutsch, G.H.; Moore, P.E.; Fazili, M.F.; Austin, E.D.; Brown, R.F.; Sokolow, A.G.; Hilmes, M.A.; Young, L.R. Childhood
interstitial lung diseases: An 18-year retrospective analysis. Pediatrics 2013, 132, 684–691. [CrossRef] [PubMed]
27. Lee, E.Y. Interstitial lung disease in infants: New classification system, imaging technique, clinical presentation and imaging
findings. Pediatr. Radiol. 2013, 43, 3–13. [CrossRef] [PubMed]
28. Saddi, V.; Beggs, S.; Bennetts, B.; Harrison, J.; Hime, N.; Kapur, N.; Lipsett, J.; Nogee, L.M.; Phu, A.; Suresh, S.; et al. Childhood
interstitial lung diseases in immunocompetent children in Australia and New Zealand: A decade’s experience. Orphanet J. Rare
Dis. 2017, 12, 133. [CrossRef]
29. Cinel, G.; Kiper, N.; Orhan, D.; Emiralioglu, N.; Yalcin, E.; Dogru, D.; Ozcelik, U.; Oguz, B.; Haliloglu, M. Childhood diffuse
parenchymal lung diseases: We need a new classification. Clin. Respir. J. 2020, 14, 102–108. [CrossRef] [PubMed]
30. Raghu, G.; Remy-Jardin, M.; Myers, J.L.; Richeldi, L.; Ryerson, C.J.; Lederer, D.J.; Behr, J.; Cottin, V.; Danoff, S.K.; Morell, F.; et al.
Diagnosis of Idiopathic Pulmonary Fibrosis. An Official ATS/ERS/JRS/ALAT Clinical Practice Guideline. Am. J. Respir. Crit.
Care Med. 2018, 198, e44–e68. [CrossRef] [PubMed]
31. Borie, R.; Kannengiesser, C.; Gouya, L.; Dupin, C.; Amselem, S.; Ba, I.; Bunel, V.; Bonniaud, P.; Bouvry, D.; Cazes, A.; et al.
Pilot experience of multidisciplinary team discussion dedicated to inherited pulmonary fibrosis. Orphanet J. Rare Dis. 2019,
14, 280. [CrossRef]
32. Van Moorsel, C.H.M.; van der Vis, J.J.; Grutters, J.C. Genetic disorders of the surfactant system: Focus on adult disease. Eur.
Respir. Rev. 2021, 30, 200085. [CrossRef]
33. Schuch, L.A.; Forstner, M.; Rapp, C.K.; Li, Y.; Smith, D.E.C.; Mendes, M.I.; Delhommel, F.; Sattler, M.; Emiralioglu, N.;
Taskiran, E.Z.; et al. FARS1-related disorders caused by bi-allelic mutations in cytosolic phenylalanyl-tRNA synthetase genes:
Look beyond the lungs! Clin. Genet. 2021, 99, 789–801. [CrossRef]
34. Borie, R.; Bouvry, D.; Cottin, V.; Gauvain, C.; Cazes, A.; Debray, M.P.; Cadranel, J.; Dieude, P.; Degot, T.; Dominique, S.; et al.
Regulator of telomere length 1 (RTEL1) mutations are associated with heterogeneous pulmonary and extra-pulmonary phenotypes.
Eur. Respir. J. 2019, 53, 1800508. [CrossRef]
35. Vavassori, S.; Chou, J.; Faletti, L.E.; Haunerdinger, V.; Opitz, L.; Joset, P.; Fraser, C.J.; Prader, S.; Gao, X.; Schuch, L.A.; et al.
Multisystem inflammation and susceptibility to viral infections in human ZNFX1 deficiency. J. Allergy Clin. Immunol. 2021,
148, 381–393. [CrossRef] [PubMed]
J. Clin. Med. 2022, 11, 1747 19 of 19
36. Nogee, L.M.; de Mello, D.E.; Dehner, L.P.; Colten, H.R. Brief report: Deficiency of pulmonary surfactant protein B in congenital
alveolar proteinosis. N. Engl. J. Med. 1993, 328, 406–410. [CrossRef] [PubMed]
37. Nogee, L.M.; Dunbar, A.E., 3rd; Wert, S.E.; Askin, F.; Hamvas, A.; Whitsett, J.A. A mutation in the surfactant protein C gene
associated with familial interstitial lung disease. N. Engl. J. Med. 2001, 344, 573–579. [CrossRef] [PubMed]
38. Shulenin, S.; Nogee, L.M.; Annilo, T.; Wert, S.E.; Whitsett, J.A.; Dean, M. ABCA3 gene mutations in newborns with fatal surfactant
deficiency. N. Engl. J. Med. 2004, 350, 1296–1303. [CrossRef] [PubMed]
39. Fresard, L.; Smail, C.; Ferraro, N.M.; Teran, N.A.; Li, X.; Smith, K.S.; Bonner, D.; Kernohan, K.D.; Marwaha, S.; Zappala, Z.; et al.
Identification of rare-disease genes using blood transcriptome sequencing and large control cohorts. Nat. Med. 2019, 25,
911–919. [CrossRef]
40. Garcia-Sancho, C.; Buendia-Roldan, I.; Fernandez-Plata, M.R.; Navarro, C.; Perez-Padilla, R.; Vargas, M.H.; Loyd, J.E.; Selman, M.
Familial pulmonary fibrosis is the strongest risk factor for idiopathic pulmonary fibrosis. Respir. Med. 2011, 105, 1902–1907. [CrossRef]
41. Krauss, E.; Gehrken, G.; Drakopanagiotakis, F.; Tello, S.; Dartsch, R.C.; Maurer, O.; Windhorst, A.; von der Beck, D.; Griese, M.;
Seeger, W.; et al. Clinical characteristics of patients with familial idiopathic pulmonary fibrosis (f-IPF). BMC Pulm. Med. 2019,
19, 130. [CrossRef]
42. Borie, R.; Le Guen, P.; Ghanem, M.; Taille, C.; Dupin, C.; Dieude, P.; Kannengiesser, C.; Crestani, B. The genetics of interstitial lung
diseases. Eur. Respir. Rev. 2019, 28, 190053. [CrossRef]
43. Moore, C.; Blumhagen, R.Z.; Yang, I.V.; Walts, A.; Powers, J.; Walker, T.; Bishop, M.; Russell, P.; Vestal, B.; Cardwell, J.; et al.
Resequencing Study Confirms That Host Defense and Cell Senescence Gene Variants Contribute to the Risk of Idiopathic
Pulmonary Fibrosis. Am. J. Respir. Crit. Care Med. 2019, 200, 199–208. [CrossRef]
44. Seibold, M.A.; Wise, A.L.; Speer, M.C.; Steele, M.P.; Brown, K.K.; Loyd, J.E.; Fingerlin, T.E.; Zhang, W.; Gudmundsson, G.;
Groshong, S.D.; et al. A common MUC5B promoter polymorphism and pulmonary fibrosis. N. Engl. J. Med. 2011, 364,
1503–1512. [CrossRef]
45. Berlin, R.; Gruen, R.; Best, J. Systems Medicine Disease: Disease Classification and Scalability Beyond Networks and Boundary
Conditions. Front. Bioeng. Biotechnol. 2018, 6, 112. [CrossRef] [PubMed]
46. Zhou, X.; Lei, L.; Liu, J.; Halu, A.; Zhang, Y.; Li, B.; Guo, Z.; Liu, G.; Sun, C.; Loscalzo, J.; et al. A Systems Approach to Refine
Disease Taxonomy by Integrating Phenotypic and Molecular Networks. EBioMedicine 2018, 31, 79–91. [CrossRef] [PubMed]
47. Dozmorov, M.G. Reforming disease classification system-are we there yet? Ann. Transl. Med. 2018, 6 (Suppl. S1), S30.
[CrossRef] [PubMed]
48. Zeggini, E.; Gloyn, A.L.; Barton, A.C.; Wain, L.V. Translational genomics and precision medicine: Moving from the lab to the
clinic. Science 2019, 365, 1409–1413. [CrossRef]
49. Ryerson, C.J.; Corte, T.J.; Lee, J.S.; Richeldi, L.; Walsh, S.L.F.; Myers, J.L.; Behr, J.; Cottin, V.; Danoff, S.K.; Flaherty, K.R.; et al.
A Standardized Diagnostic Ontology for Fibrotic Interstitial Lung Disease. An International Working Group Perspective. Am. J.
Respir. Crit. Care Med. 2017, 196, 1249–1254. [CrossRef]
50. Robinson, P.N.; Kohler, S.; Bauer, S.; Seelow, D.; Horn, D.; Mundlos, S. The Human Phenotype Ontology: A tool for annotating
and analyzing human hereditary disease. Am. J. Hum. Genet 2008, 83, 610–615. [CrossRef]
51. Kohler, S.; Gargano, M.; Matentzoglu, N.; Carmody, L.C.; Lewis-Smith, D.; Vasilevsky, N.A.; Danis, D.; Balagura, G.; Baynam, G.;
Brower, A.M.; et al. The Human Phenotype Ontology in 2021. Nucleic Acids Res. 2021, 49, D1207–D1217. [CrossRef]
52. Klay, D.; Platenburg, M.; van Rijswijk, R.; Grutters, J.C.; van Moorsel, C.H.M. ABCA3 mutations in adult pulmonary fibrosis
patients: A case series and review of literature. Curr. Opin. Pulm. Med. 2020, 26, 293–301. [CrossRef]
53. Bush, A.; Barbato, A.; Clement, A.; Cunningham, S.; Blic, J.; Gilbert, C.; Goldbeck, L.; Kiper, N.; Schwerk, N.; Griese, M. European
idiopathic pulmonary fibrosis Patient Charter: A missed opportunity. Eur. Respir. J. 2016, 48, 282–283. [CrossRef]