MSC Prospectus
MSC Prospectus
MSC Prospectus
MSc. BIOSTATISTICS
PROSPECTUS
1
MSc Biostatistics Course
Eligibility criteria
Bachelor Degree in Statistics
Any Bachelor Degree with statistics as ancillary /allied subject
2
Choice Based Credit System (CBCS) Regulations
Credit refers to describe the quantum of syllabus in terms of hours of study. It indicates
differential weight-age given according to the contents & duration of the courses in the
curriculum design.
Core Courses are compulsory subjects offered.
Elective Courses are courses offered by NIE
Supportive courses are of intermediary & introductory level in nature; aimed at bridging
the gap in the curricula; Enabling improvement skills in computation & communication.
Human Rights is a compulsory credit course offered in the III semester.
The course is designed under lectures / practical work / Journal review/ Seminars /
dissertation work / viva-voce.
Application procedure
Online application - advertised thro NIE & ICMR website
Application submission fee of Rs 1000/-drawn in favour of Director NIE
Course fee Rs 60,000 for four semesters (non refundable)
Examination fees as University norms
Method of Selection
Review/Scrutiny of application form
Written test/ personal interview
Reservation of seats and concession for SC /ST/ differently abled student as per
Govt. norms.
Written test/ personal interview will be held at NIE
Course Subjects
1. No. of Core papers: 13
Practicals: 3
(Including Journal review/seminar)
2. Elective courses: 2 out of 4
3. Supportive courses: 2 out of 4
4. Dissertation/project work: 1
Total 21
3
Fee Structure for MSc. Biostatistics Studies
Accommodation
On-campus limited hostel accommodation is available. Allotment will be based on the first
come first served basis.
4
MSc BIOSTATISTICS FRAME WORK
Elective courses
1. Data Management
2. Applied Spatial Statistics
3. Health informatics
4. Bayesian Statistics
Supportive courses
1. Scientific communication
2. Health Economics
3. Field Epidemiology
4. Health Systems
5
Grading System
The term Grading system indicates a seven point scale of evaluation of the performance of
students in terms of marks, grade points, letter grade and class as given below.
6
Course Competencies
Develop an efficient design for collecting, recording, and storing non spatial & spatial
data collected in the conduct of public health and medical research.
Develop sample size and statistical power calculations for basic study designs including
those utilized in clinical trials.
Produce edited data sets suitable for statistical analyses.
Perform analyses of stated hypotheses using a variety of analytical tools including
analysis of variance, multiple regression, nonparametric statistics, logistic regression,
multivariate analyses, spatial data analysis and methods for analyzing rates and failure
time data.
Interpret results of advanced statistical analyses and use these results to make relevant
inferences from data.
Develop written presentations based on intermediate to advanced statistical analyses
for both public health professionals and educated lay audiences.
Develop oral presentations based on intermediate to advanced statistical analyses for
both public health professionals and educated lay audiences.
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MSc. BIOSTATISTICS CURRICULUM
8
M_BS C01 5 hours/week 5 credits
Basic statistics
Unit 1 Types of Data
Qualitative and quantitative data
cross sectional and time series data
discrete and continuous data
Nominal, ordinal, ratio and interval scales
Unit 2 Presentation of Data
Frequency distribution and cumulative frequency distribution
diagrammatic and graphical presentation of data
construction of bar, pie diagrams, histograms, frequency polygon,
frequency curve and ogives
Measures of central tendency
Mean
Median
Mode
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Random experiment/trial
sample point, sample space, operation of events
exhaustive, equally likely and independent events
Definition of probability-classical, relative frequency
statistical and axiomatic approach, conditional probability
Addition & multiplication laws of probability
Unit5 Random Variable and Probability Functions
Definition of random variable,
discrete and continuous random variable,
probability function,
probability mass function
probability density functions, distribution function and its properties
functions of random variables
Joint, marginal and conditional probability distribution function
BOOKS RECOMMENDED
1. Goon A.M., Gupta M. K., Dasgupta B (2008): Fundamentals of Statistics,
Published by Prentice Hall, 2nd edition.
2. Gupta S.C.& Kapoor V.K, (2000): Fundamentals of & Mathematical Statistics,
Sultan Chand Sons 10th edition.
3. Croxton F.E., Cowden D.J. & Kelin S, (1967): Applied General Statistics,
Prentice Hall.
4. Hogg and Craig, Introduction to Mathematical Statistics, (2013): Prentice
Hall, 7th edition.
5. Steel and J H Torrie, Principles and procedures of statistics, (2007): McGraw
Hill, 2nd edition.
10
BOOKS FOR READING (FREE e-BOOKS)
1. http://www.e-booksdirectory.com/listing.php?category=15
2. http://www.analyticsvidhya.com/blog/2016/02/free-read-books-statistics-
mathematics-data-science/
11
M_BS C02 5 hours/week 5 credits
Statistical Inference I – Estimation Methods
Unit 1 Statistical Estimation
Parameter and statistic
Sampling distribution of statistic
Point and interval estimate of a parameter
Concept of bias and standard error of an estimate
Standard errors of sample mean, sample proportion, standard deviation
Unit 2 Properties of a good estimator
Unbiasedness
Efficiency
Consistency
Sufficiency
(Definitions & Illustrations)
Cramer Rao’s Inequality (statement-concept)
Consistency and asymptotic efficiency
Fisher’s Information Function
Rao-Blackwell theorem (statement-concept)
12
Unit 5 Bayesian Inference
Back ground
Bayes theorem
Prior and posterior distributions
Interval estimation
Fisher’s fiducial arguments
BOOKS RECOMMENDED
1. Daniel, W. W (2005): Biostatistics- A foundation for analysis in the Health
Sciences, John Wiley & Sons, 7th edition.
2. Hogg, R. V., McKean, J. W. and Craig, A. T. (2006): Introduction to
Mathematical Statistics, 6th edition, Pearson Education.
3. Rohatgi,V.K. and Saleh, A.K.(2001):An Introduction to Probability and
Statistics, John Wiley & Sons. (Chapter 8, Section 8.1 through 8.8)
BOOKS FOR REFERENCE
1. Casella, G. and Berger, R.L. (2002): Statistical Inference, Thomson Duxbury,
2nd edition.
2. Kale, B.K, (1999): A First Course on Parametric Inference, Narosa Publication ,
New Delhi, 2nd edition.
3. Pagano, M. and Gauvreau, K. (2000): Principles of Biostatistics, Duxbury, 2nd
edition.
4. Rao, C.R. (2002): Linear Statistical Inference and its applications, Wiley series
in Probability and Statistics, 2nd edition.
13
M_BS C03 5 hours/week 5 credits
Basic Epidemiology
Unit 1 Introduction to Epidemiology
What is epidemiology?
The historical context Origins
Definition, scope, and uses of epidemiology
BOOKS RECOMMENDED:
1. R Bonita, R Beaglehole. T Kjellström, (2006): Basic Epidemiology 2nd Edition.
http://apps.who.int/iris/bitstream/10665/43541/1/9241547073_eng.pdf
2. Dicker, Richard, (2006): Principles of Epidemiology in Public Health Practice, 3rd
edition. http://www.cdc.gov/ophss/csels/dsepd/ss1978/ss1978.pdf
3. Altman D G, (2006): Practical Statistics for Medical Research, London: Chapman
and Hall, 2nd edition.
4. Leon Gordis M, (2004): Epidemiology, NA Saunders Company, 3rd edition.
15
M_BS C04 5 hours/week 5 credits
Sampling methods and Sample size determination
Unit 1 Introduction
Advantages of sampling method
Some uses of sample surveys
The principal steps in a sample survey
The role of sampling theory
Probability sampling
Alternatives to Probability sampling, Use of normal distribution, Bias and its
effects, The mean square error
Unit 2 Simple random sampling
Simple random sampling, Selection of simple random sample, definitions
and notation, properties of the estimate, variance of the estimates
The finite population correction, Estimation of the standard error from a
sample, confidence limits
Random sampling with replacement
Estimation of a ratio, Estimates of means over subpopulations, Estimates of
totals over subpopulations
Comparisons between domain means, Validity of the normal approximation,
Linear estimators of the population mean
Unit 3 Sample size estimation
A hypothetical example, Analysis of the problem, The specification of
precision
The formula for n in Sampling for proportions, Rare items-Inverse sampling,
The formula for n with continuous data
Advance estimates of population variances, Sample size with more than one
item
Sample size when estimates are wanted for subdivisions of the population
Sample size in decision problems
The design effect
16
Unit 4 Stratified random and Systematic sampling
Description, Notation, Optimum allocation
Estimation of sample size with continuous data, proportions
Relative precision of stratified and simple random sampling
Systematic sampling relative to cluster sampling
Comparison of Systematic with stratified random sampling
Stratified systematic sampling
Unit 5 Single stage cluster sampling: Clusters of equal and unequal sizes
Reasons for cluster sampling, A simple rule
Cluster sampling for proportions
Cluster Units of unequal size
Sampling with probability proportional to size
Selection with unequal probabilities with replacement
Probability proportional to its size measure
BOOKS RECOMMENDED
1. William G. Cochran, (1997): Sampling Techniques, , John Wiley & sons 3rd edition.
2. Murthy M N (2012): Sampling Theory and methods, Statistical publishing
Society, Calcutta 2nd edition.
3. Levy PS, Lemeshow S (1999): Sampling of Populations: Methods and
Applications, New York: Wiley Interscience, 3rd edition.
4. Lohr SL (2009): Sampling: Design and Analysis. Duxbury Press, 2nd edition.
5. Wayne Fuller (2009): Sampling Statistics, Wiley, 1st edition.
BOOKS FOR REFERENCE
1. Foundations of Inference in Survey Sampling (1997), Cassel, C.M., Sarndal, C.E.
and Wretman, John Wiley & Sons, 2nd edition.
2. Floyd J. Fowler (1995), Improving Survey Questions: Design and Evaluation, Sage
Publications, 2nd edition.
17
M_BS C05 4 hours/week 4 credits
Population Studies
Unit 1 Introduction to Demography
Definition and uses of demographic data
Source of vital statistics: census method - Registration method
Sources of Demography Data: Secondary sources - SRS– Surveys
Unit 2 Mortality and Fertility
Mortality Measures
Nature And Uses Of Mortality Statistics
Mortality measures: Merits and demerits of Crude Death Rate (CDR) and
Age-Specific Death Rates, Infant Mortality Rate(IMR)
Fertility measures
Basic terms and concepts used in the study of fertility
Measures of fertility: Crude Birth Rate, Age specific fertility rate, General
fertility rate, Total fertility rate, Gross reproductive rate and Net reproductive
rate, Order-specific fertility rates.
Life table and Abridged life table concepts
Unit 3 Standardization
Need and importance of standardization
Direct and indirect technique of standardization of rates and ratios in the
light of mortality/fertility rates
Decomposition of Infant mortality rate and its sub-divisions
Maternal Mortality Rate and Ratios
Unit 4 Population distribution and indices of dissimilarity
Population classification - Urban-Rural international Standard definitions
Rank size Rule for growth pattern
Index of dissimilarity , Theil’s index, Isolation index ,Clustering
Gini Concentration Ratio and Lorenz Curve
Unit 5 Mobility and Migration
Concept of mobility and Migration
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Types of migration, internal migration patterns and characteristics in
developing countries with a special focus on India.
BOOKS RECOMMENDED
1. Goon A.M., Gupta M. K., Dasgupta B (2008): Fundamentals of Statistics,
Published by Prentice Hall, 2nd edition.
2. Gupta S.C.& Kapoor V.K, (2000): Fundamentals of & Mathematical Statistics,
Sultan Chand Sons 10th edition.
3. Pathak, K.B. and F.Ram, (1998): Techniques of Demographic Analysis,
Mumbai,Himalaya Publishing House, Chapter 4
4. Jacob S. Siegel, David A. Swanson (2004): The methods and Materials of
Demography, Elsevier Inc.
BOOKS FOR REFERENCE:
1. Hinde, Andrew (1998), Demographic Methods, London: Edward Arnold, 1st
edition.
2. Cox, P. (1959): Demography, Cambridge University Press, 2nd edition.
3. Keyfitz, (1985): Applied mathematical Demography, Springer-Verlag, New York,
2nd edition.
4. Shrivastava, O.S. (1995): Demography and population Studies, Vikas Publishing
house private limited, 2nd edition.
19
M_BS C06 4 hours/week 4 credits
Statistical Inference II – Tests of Hypotheses
Unit 1 Introduction to Hypothesis Testing
Null and alternative hypotheses- Simple and composite hypotheses,
Critical region,
Level of significance, one tailed and two tailed testing,
Types of errors (I & II)
Power and Sample size
P- value interpretation and its associated misconceptions
Unit 2 Test of Hypotheses
Neyman-Pearson Lemma,
Tests based on Binomial, Poisson and Normal distribution(s)
Unit 3 Small and Large Sample Tests
Small Sample Tests
Test for means and variances based on t, F, χ2 distributions.
Large Sample Tests:
Tests and Interval Estimation for
Single mean, single proportion
Two means, two proportions
Fisher’s Z transformation
Unit 4 Nonparametric Tests
Test of goodness of fit
Chi square test
Kolmogrov- Smirnov one sample test
Sign test,
Paired sample test
Wilcoxon signed rank test
Paired sample rank test
Unit 5 Two sample problems
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Kolmogrov- Smirnov two sample test
Mann- Whitney U test
Wald-Wolfowitz runs test
Sequential Tests
Sequential methods of drawing inferences
Sequential probability ratio test (SPRT) – definition and basic concepts
SPRT for testing simple hypotheses
Operating Characteristic function
Average Sample Number function
Applications to binomial, Poisson and normal distributions
BOOKS RECOMMENDED
1. Conover, W. J. (2006): Practical Non-parametric Methods in Statistics, 2nd
edition, (Unit 5).
2. Daniel, W.W. (2006): Biostatistics: A foundation for analysis in the Health
Sciences, John Wiley & Sons, 7th edition (Unit 5).
3. Rohatgi,V.K. (1984): An Introduction to Probability Theory and Mathematical
Statistics, Wiley Eastern, 3rd edition ( Chapter 14-14.5 for SPRT).
4. Rohatgi, V.K. and Saleh, A.K. (2001): An Introduction to Probability and Statistics,
John Wiley & Sons, 3rd edition (Chapters 8 - 8.3, 9, 10- 10.1,10.2,10.6, 11 - 11.3).
BOOKS FOR REFERENCE:
1. S.C. Gupta and V.K. Kapoor (2008): Fundamentals of Applied Statistics, Sultan
Chand and Sons, 2008 4thedition.
2. G. Casella and R.L. Berger (2002): Statistical Inference, Thomson Duxbury, 2 nd
edition.
3. E.J. Dudewicz and S.N. Mishra (1988): Modern Mathematical Statistics, John
Wiley and Sons, 2nd edition.
4. A.M. Goon, M.K. Gupta and B. Dasgupta (2003): An Outline of Statistical Theory
(Vol. I), World Press, Kolkata, 4th edition.
21
M_BS C07 4 hours/week 4 credits
Longitudinal Data Analysis
Unit 1 One way classification
Analysis of variance(ANOVA) : One Way, Two Way & generalization
Single factor ANOVA
Two-factor ANOVA with unequal and equal replication (with/without
interactions)- fixed and random effects models
Multiple comparison tests-Tukey, Newman-Keul, Scheffe tests
Unit 2 Designs of Experiments
Completely Randomized Designs (CRD)
Randomized Block Designs (RBD)
Latin Square Designs (LSD)
Unit 3 Advanced Designs for Analysis
Repeated measures designs
ANCOVA (for CRD and RBD)
Factorial Designs (22,32)
Unit 4 Bioassay
Introduction - Direct assays: the nature of direct assays, precision of
estimates and the design of direct assays.
Dose Response Relations: Indirect assays, the dose response regression
Standard curve estimation, slope estimation, and simultaneous trial
estimation
Unit 5 Response Surface Methodology (RSM)
Concept of Response Surface Methodology
Central Composite Designs (CCD)
Box-Behnken Designs
Missing Data
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BOOKS RECOMMENDED
1. Das, M.N. and Giri N.C. (2006): Design and Analysis of Experiments Delhi. New
Age International (P) Ltd., New, 2nd edition.
2. Montgomery D.C (2006): Design and Analysis of Experiments, Wiley India 5th
Edition.
3. Zar, J.H. (2007): Biostatistical Analysis, Pearson Education 4th edition.
4. Govindarajulu, Z. (2000): Statistical techniques in Bioassay, Thomson Duxbury,
2nd edition.
23
M_BS C08 4 hours/week 4 credits
Applied Linear Regression Analysis
Unit 1 Simple linear regression
Assumptions and Estimation of model parameters
Standard error of estimators
Testing of hypotheses on slope and intercept ( β’s)
Coefficient of determination (R2 )
Unit 2 Multiple linear regressions
Least square estimation of model parameters
Variance covariance of least squares estimators
Estimation of error variance
Tests of hypotheses of regression parameters
Significance of regression (ANOVA, R2and adjusted R2),
Dummy variable regression- general concepts and uses
Unit 3 General linear Models (GLM)
Introduction - Gauss Markov Setup
Assumptions - Homoscedasticity & Hetroscedasticity
Multicollinearity and it’s solutions
Autocorrelation - Durbin – Watson test
Variance stabilizing transformations to linearize the model
Analytical methods for selecting a transform
Unit 4 Variable Selection
Selection of Variables – forward selection, backward elimination and
stepwise regression (algorithms only)
Weighted least squares
Information Criteria
Akaike Information Criteria
Unit 5 Introduction to Non-linear Regression
Nonlinear regression – transformation to a linear model,
Usefulness of the nonlinear regression method
24
Limitations of the nonlinear regression method
Use of re-sampling procedures in regression
BOOKS RECOMMENDED
1. Montgomery, D. C., Peck, E. A. and Vining, G. G. (2003): Introduction to Linear
regression analysis, John Wiley and Sons, Inc. 3rd edition Chapters 2, 3, 4, 5, 6, 8
(8.1,8.2), 9, 10, 12 (12.1,12.3,12.4), 14 (14.1.2).
2. Zar, J.H. (2006): Biostatistical Analysis, Pearson education, 4th edition Chapter 18
(18.1, 18.2,18.4,18.5).
25
M_BS C09 4 hours/week 4 credits
Categorical Data Analysis
Unit 1 Contingency table analysis
Introduction - Nature of Categorical data - Statistical inference for a
proportion
Contingency Tables and their distribution: Binomial and Multinomial
sampling
Table structure comparing proportions - Comparing proportions in two-by-
two tables: Difference of proportions
Relative risk - Odds Ratio - Properties of Odds Ratio - relationship between
Odds Ratio and Relative Risk
Unit 2 Measures of Association
Nominal and Ordinal Measures of Association - Inference for Contingency
tables: Interval estimation for difference of proportions, odds ratio, log odds
ratio and relative risk
Testing Independence in Two-Way tables: Pearson and Likelihood-ratio chi-
square tests - Yate’s correction for continuity-Residuals for cells in a
contingency table-Partitioning chi-squared
Trend tests for 2 x J tables - Testing Independence for Ordinal Data-Fisher
Exact Test for 2 x 2 tables - Exact Inference for small samples - Association in
Three-Way Tables: Partial Tables - Marginal and conditional and Odds Ratios
- Homogeneous Association - Cochran-Mantel-Haenszel methods
Unit 3 Logistic regression
Logit models for Binary data-Binomial GLM for 2 x 2 contingency tables
Logistic regression: Interpreting logistic regression - Inference for logistic
regression
Maximum likelihood estimate - test of overall regression and goodness of fit
Deviance statistic, Wald test, LR test, Score test-Logistic regression
diagnostics
Multiple Logistic Regression
Unit 4 Logit models for multinomial responses
26
Nominal Responses: Baseline-Category Logit Model
Ordinal Responses: Cumulative Logit Models
Ordinal Responses: Cumulative Link Models
Alternative Models for Ordinal Responses
Unit 5 Loglinear models for contingency tables
Loglinear Models for Two-Way Tables
Loglinear Models for Independence and Interaction in
Three-Way Tables
Inference for Loglinear Models
Loglinear Models for Higher Dimensions
BOOKS RECOMMENDED
1. Agresti, A. (2002): Categorical data analysis, John Wiley & Sons, 3rd edition.
2. McCullagh, P. and Nelder, J.A. (1991): Generalized Linear Models, Chapman and hall,
London, 2nd edition.
3. Draper NR and Smith H (1981): Applied Regression Analysis, John Wiley & Sons, 3rd
edition.
4. Hosmer D., Lemeshow S., Sturdivant RX. Applied Logistic Regression, ISBN-13: 978-
0470582473ISBN-10: 0470582472, 3rd edition.
BOOKS FOR REFERENCE
1. Agresti, A. (1991): An Introduction to Categorical data analysis, John Wiley & Sons,
2nd edition.
2. Armitage, P. and Berry, G. (1987): Statistical methods in Medical Research, Blackwell
Scientific Publications, USA, 3rd edition.
3. Deshpande, J.V., Gore, A.P. and Shanubhogue, A. (1995): Statistical Analysis of Non
Normal Data, New Age International Publishers Ltd., New Delhi, 1st edition.
4. Hardin, J.W., and Hilbe, J.M. (1994): Generalized Estimating Equation, Chapman and
Hall, London, 2nd edition.
5. Hosmer, D.W. and Lemeshow, S.(1989): Applied Logistic Regression, John Wiley &
Sons Inc, 2nd edition.
27
M_BS C10 4 hours/week 4 credits
Time to event data analysis
Unit 1 Introduction and definition of time series analysis
Components of time series, Trend, seasonal variations, cyclic variations,
irregular component
Method of curve fitting by principle of least squares
moving average method
Analysis of seasonal fluctuations
Construction of seasonal indices using method of simple averages
ratio to trend method
ratio to moving average method.
Unit 2 Introduction and terminology used in Survival analysis
Survival functions- Concept of Time and event
Censoring mechanism and truncations
Order and Random Censoring
Survival, hazard and density functions
Mean and median residual life and their elementary properties
Unit 3 The shapes of hazard and survival functions
Exponential
Gamma
Weibull
Lognormal
Preparing survival time data for analysis and estimation
Unit 4 Kaplan Meier methods
Point estimation, Confidence Intervals, Scores, tests based on maximum
likelihood estimation
Likelihood ratio, Partial likelihood estimation-log logistic distribution
Kaplan Meier methods-Estimation of the hazard and survivor functions
Kaplan-Meier life table and product-limit methods
28
Unit 5 Nonparametric methods
Log rank test
Gehan Test
Mantel - Haentzel Test
Tarone - Ware tests
Efron Tests
BOOKS RECOMMENDED
1. Klein, J.P. and Moeschberger, M.L. (2003): Survival Analysis- Techniques for
Censored and Truncated data. Springer Inc, 1st edition.
2. Miller, R.G. (1981): Survival Analysis, John Wiley and Sons, 1st edition.
3. Deshpande, J.V., Gore, A.P. and Shanubhogue, A. (1995): Statistical Analysis of Non
Normal Data, New Age International Publishers Ltd., New Delhi, 1st edition.
BOOKS FOR REFERENCE
1. Barlow, R. E. and Proschan, F. (1975): Statistical Theory of Reliability and Life testing,
Holt, Rinehart and Winston, New York, 2nd edition.
2. Johnson, E.R.E. and Johnson, N.L. (1980): Survival models and Data Analysis, John
Wiley and Sons, 3rd edition.
3. Lee, C.T. (1997): Applied survival analysis, John Wiley, 2nd edition.
4. Croxton F.E., Cowden D.J. &Kelin S (1973): Applied General Statistics, Prentice Hall,
1st edition.
5. Johnson RA and Wichern DW (1984): Applied Multivariate Statistical Analysis, John
Wiley & sons, 2nd edition.
29
M_BS C11 4 hours/week 4 credits
Applied Multivariate Analysis
Unit 1 Multivariate Normal Distribution
Definition, mean vector, variance-covariance matrix, properties
Maximum likelihood estimators for mean vector, variance- covariance matrix
Tests of hypotheses concerning mean vector, variance- covariance matrix
(one sample and two sample problems)
30
Single linkage
average linkage
complete linkage methods
Hierarchical clustering methods
Introduction to Hierarchical clustering methods
Non-hierarchical clustering methods
Advantage and disadvantage of Hierarchical clustering methods
K means method.
BOOKS RECOMMENDED
1. Johnson, R.A. and Wichern, D.W. (2007): Applied Multivariate Statistical Analysis,
Pearson Education, Asia, 6th edition.
2. Morrison (1990): Multivariate Statistical Methods, McGraw-Hill,.
3. Allen Agresti (1990) Categorical data analysis, 2nd edition.
31
M_BS C12 5 hours/week 5 credits
Clinical Trials
Unit 1 Introduction to Clinical Trials
Historical background – The need and ethics of clinical trials
Organization and Planning ,Main features of the study protocol
Selection of patients ,Treatment schedule ,Evaluation of patient response
Follow-up studies
GCP/ICH guidelines
Unit 2 Different Phases of clinical trials
Phase I, II, III and IV trials
Basic study designs: Randomized control study, Nonrandomized concurrent
control study
Historical controls, cross-over design, withdrawal studies
Group allocation design, hybrid designs
Studies of equivalency
Unit 3 Methods of Randomization
Fixed allocation randomization ,Stratified randomization,Adaptive
randomization ,Unequal Randomization
Blinding and Placebos: Unblinded, Single blind and Double-blind
trials,conduct of double blind trials
Crossover trials- Design, Analysis and interpretation
Unit 4 Statistical methods for determining Trial size
Method for dichotomous response variable
Continuous response variables
Repeated measures
Cluster randomization and equivalency of intervention
Multicenter trials
Unit 5 Data management
Interim analysis
Case report form design
32
Database design
Data collection system for good clinical practice
Terminologies used in Clinical research
BOOKS RECOMMENDED
1. Fundamentals of clinical trials (2010): Lawrence M. Friedman, Curt D.
Furberg, David L. DeMets. Springer; 4th edition.
2. Clinical Trials (2006): A practical guide to design, analysis and reporting.
Wang D, Bakhai A. Remedica; 1st edition.
3. SPIRIT 2013: New guidance for content of clinical trial protocols. Chan AW,
TetzlaffJM, Altman DG, Dickersin K, Moher D. Lancet. 2013 Jan 12;381(9861)
:91-2.
4. Pocock, S.J. (1991): Clinical Trials – A Practical Approach, John Wiley and
Sons.
http://onlinelibrary.wiley.com/doi/10.1002/0470842563.fmatter_indsub/pdf
BOOKS FOR REFERENCE
1. Fleiss, J.L. (1986): The design and analysis of clinical experiments John Wiley
& Sons.
2. Meinert, C.L. (1986): Clinical trials: Design, Conduct and Analysis, Oxford
university press.
http://samples.sainsburysebooks.co.uk/9781118031179_sample_388791.pdf
3. Piantadosi, S. (2005): Clinical Trials - A Methodological Perspective Wiley
series in probability and Statistics, 2nd edition.
33
M_BS C13 (Compulsory subject) 3 hours/week 3 credits
Human rights
Unit 1 Background
Introduction
Meaning
Nature and Scope
Development of Human Rights
Theories of Rights
Types of Rights.
34
Human Rights Violations against Minorities, SC/ST and Transgenders
Preventive Measures.
BOOKS RECOMMENDED
1. Jagannath Mohanty, Teaching of Human sRights New Trends and Innovations, Deep
& Deep Publications, Pvt. Ltd., New Delhi,2009
2. Ram Ahuja: Violence Against Women, Rawat Publications Jewahar Nager,
Jaipur.1998.
3. Sivagami Parmasivam, Human Rights, Salem, 2008
4. Hingorani R.C.: Human Rights in India: Oxford and IBA, New Delhi.
35
M_BS Elective Course 4 hours/week 4 credits
Data Management
Unit 1 Basics of computers
Introduction,
CPU
I/O devices
memory, storage
working with files & folders
system software
application software
virus/worms threat management.
BOOKS RECOMMENDED
37
M_BS Elective Course 4 hours/week 4 credits
Applied Spatial Statistics
Unit 1 Introduction to Spatial Statistics
Components of spatial data
Geographical coordinates
Map Projections
Coordinate Systems
Types of spatial data: Vector data and raster data
Remotely sensed data
Digitizing
Unit 5 Models
38
Introduction to spatial models
Spatially correlated data
Linear regression models for Spatially Autocorrelated data
Interpretation and use with spatial data
GeoDa software over view
BOOKS RECOMMENDED
1. Lance A. Waller and Carol A. Gotway (2004): Applied Spatial Statistics for Public
Health Data, John Wiley & Sons, 1st edition.
http://samples.sainsburysebooks.co.uk/9780471662679_sample_381451.pdf
2. Bailey, T.C. and A.C. Gatrell (1995): Interactive Spatial Data Analysis. Essex, England,
Prentice Hall 1st edition.
3. A. E. Gelfand, P. J. Diggle, M. Fuentes and P. Guttorp (2011) “Handbook of Spatial
Statistics edited by Gelfand, A. E., Diggle, P. J., Fuentes, M. and Guttorp, P.
4. N. Cressie (2015): Statistics for spatial data Wiley-Interscience; 2nd edition.
5. S. Banerjee, B. P. Carlin and A. E. Gelfand (2014): “Hierarchical modeling and analysis
for spatial data”, Chapman & Hall/CRC 6th edition.
BOOKS FOR READING
1. Wiley. Cressie, N. and Wikle, C. (2011): Statistics for Spatio-Temporal Data. Wiley 1st
edition.
2. Diggle, P. J. (2003) Statistical Analysis of Spatial Point Patterns 2nd edition.
3. Hodder Arnold. Diggle, P. J. and Ribeiro, R. J. (2007) Model-based Geostatistics.
Springer 2nd edition.
39
M_BS Elective Course 4 hours/week 4 credits
Health Informatics
Book recommended
Taylor P, From Patient data to Medical knowledge – The principles and Practice of
Health Informatics (2006); Blackwell Publishing – BMJ Books.
40
Books for Reading
1. Enrico Coiera Hodder Arnold , Guide to health informatics (2003) Second Edition.
2. Frank Sullivan, Jeremy C Wyatt, ABC of Health Informatics,(2006) Blackwell Publishing –
BMJ Books.
41
M_BS Elective Course 4 hours/week 4 credits
Bayesian Statistics
Unit 1 Bayes law
Background and introduction
The differences between Bayesian verses non Bayesian approaches;
Baye’s law for multiple events
Unit 2 Markov Chain Monte Carlo techniques
Introduction
Informative priors
Non informative priors
Simple Gibbs sampling
Simple Metropolis Sampling
Unit 3 Specifying Bayesian Models
Purpose
Likelihood theory and estimation
The Basic Bayesian Framework.
Summarizing Posterior Distributions with intervals.
Unit 4 The Bayesian Prior
The importance of priors
Posterior distribution
A Plethora of priors
Conjugate priors
Choice of priors
Different posterior beliefs
Unit 5 Bayesian models
Bayesian Hierarchical models
Basic structure of the Bayesian Hierarchical Model
A poison Gamma Hierarchical Model
WinBUGS software
OpenBUGS module
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BOOKS RECOMMENDED
1. Jeff Gill, Bayesian methods: A Social and Behavioural Approach Chapman & Hall
(CRC)
2. P M Lee, Bayesian Statistics: An Introduction, Arnold
3. Andrew Gelman, John B. Carlin, H.S. Stern, and D.B. Rubin, Bayesian Data Analysis,
2nd Edition. Chapman & Hall (SFGEL)
4. G R Iverson, Bayesian Statistical Inference, Beverley Hills, CA: Sage (SF4 IVE)
5. J Albert, Bayesian Computation with R, Springer 2007
6. D V Lindley, An Introduction to Probability and Statistics from a Bayesian
Viewpoint (2 vols - Part I: Probability and Part II: Inference), Cambridge University
Press (S 9 LIN).
BOOKS FOR READING
1. Sivia, D. and skilling J (2006). Data analysis: A Bayesian tutorial. Oxford: Oxford
University Press, 2nd edition.
2. Bernardo, J. M., & Smith, M. F. A. (1994). Bayesian theory. New York: Wiley, 1st
edition.
3. Box, G. E. P., and Tiao, G. C. (1992). Bayesian inference in statistical analysis. New
York: Wiley, 1st edition.
43
M_BS Supportive Course 4 hours/week 4 credits
Scientific communication
Unit 1 Science Communication overview
44
Preparing message for print media, writing press release
Preparing message and handling TV/radio media
BOOKS RECOMMENDED
1. Laura Bowater, Kay Yeoman, (2012): Science Communication: A Practical Guide for
Scientists. ©2013, Wiley-Blackwell.
2. Bucchi, M. & Trench, B. (Eds.) (2008). Handbook of Public Communication on Science
and Technology. London: Routledge.
3. Cheng, D., Claessens, M., Gascoigne, T., Metcalfe, J., Schiele, B., & Shi, S. (eds.)
(2008). Communicating Science in Social Contexts: New models, New Practices. New
York: Springer.
4. Joseph E. Harmon and Alan G. Gross, The Craft of Scientific Communication ©
2010 (Chicago Guides to Writing, Editing, and Publishing).
5. Schimel, Joshua (2011). Writing Science: How to Write Papers That Get Cited and
Proposals That Get Funded. Oxford University Press
45
M_BS Supportive Course 4 hours/week 4 credits
Health Economics
Unit 1 Tools for Health Economics
Opportunity cost
Demand and supply of health care, price elasticity of demand
Utility functions
Market structures, gross domestic product and inflation
Equity and Efficiency
Unit 2 Economic evaluation in health care
Concept and need of health care evaluation
Concept of efficiency and its types
Influence of economic evaluation in policy making
Frameworks used to prioritise different programs
Types of economic evaluation in health care -
Perspective of Economic Evaluation
Interpreting CER and ICER results of economic evaluation
Methods of economic evaluation – RCT and Decision modeling
Unit 3 Costing and cost analysis
Type of costs
Perspectives of costing – Economic and financial
Costing methods
Designing a costing study
Analysing cost data
Unit 4 Economic evaluation in health care
Valuation of benefits – DALY, QALY, WTP
Uncertainty analysis - Types of uncertainties, analysing uncertainties
Decision rules and thresholds - Interpreting CER and ICER results,
Unit 5 League tables and threshold
Introduction to league tables and thresholds
46
The problem of threshold in evaluating the cost
The limits of cost effective analysis
Using the Drummond checklist for critical appraisal of economic evaluation
BOOKS RECOMMENDED
1. Charles E. Phelp (2009), Health Economics, Prentice Hall , 4th edition.
2. Yasodha Shanmugasundaram (1994) Theory and Practice of Health Economics in
India Allied Publishers Ltd, 1st edition.
3. Government of India (1983) National Health Policy, New Delhi.
4. ICSSR AND ICMR (1981) Health for ALL 2000 A,D, ICSSR ,Delhi.
5. Naik J.P (1977) An alternative System of Health Care Services in India – Some
Prospects ICSSR Delhi.
6. Panchamukhi, P.R (1980), Economics of Health: A Trend Report, Volume – VII
Infrastructure, ICSSR Delhi.
BOOKS/WEB PAGES FOR READING
1. Health Economics Core Library Recommendations, 2011.
https://www.nlm.nih.gov/nichsr/corelib/hecon-2011.html
2. Introduction to Health economics
http://www.cartercenter.org/resources/pdfs/health/ephti/library/lecture_notes/health_sci
ence_students/LN_Intro_to_Health_Economics_final.pdf
47
M_BS Supportive Course 4 hours/week 4 credits
Field Epidemiology
Unit 1 Public health situation analysis
Framework of situation analysis
Data sources
Prioritization of public health problems
SWOT analysis
Unit 2 Disease surveillance
To manage and operationalise the disease surveillance system
Conduct basic time, place and person analysis of surveillance data
Use surveillance information for action
Describe and evaluate a surveillance system
Unit 3 Outbreak investigations
Conceptualize and undertake epidemiologic and laboratory investigations of
outbreaks
Understand and undertake appropriate measures for preparation and
response to outbreaks
Unit 4 Public health programme evaluation
Concept and purpose of evaluation
Six steps of framework for public health programme evaluation
Logic model
Elements of description of health programme
Evaluation design and tools
Interpreting results of evaluation
Unit 5 Epidemiological Data
Data Interpretation
Validity
Reliability
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RECOMMENDED BOOKS
1. Michael Gregg (2008): Field Epidemiology, Oxford University Press, USA, 2nd edition.
2. ebook selected Chapters www.ciphi.ca/hamilton/Content/documents/fieldepi.pdf
3. Mark S. Dworkin (2011) Cases in Field Epidemiology: A Global Perspective. Publisher
Jones & Bartlett Learning.
4. Jones & Bartlett (2012): Learning, Methods of field Epidemiology. Publisher Michael
brown.
5. Anderson RM & May RM (1992) Infectious Diseases of Humans. Dynamics and
Control. Oxford Science Pubs., ISBN 0-19-854040-X.
RECOMMENDED FOR READING
1. Beaglehole R, Bonita R. (1997): Public Health at the Crossroads. Cambridge
University Press.
2. Breslow NE, Day NE, Davis W. Statistical methods in cancer research (1980) Vol 1.
Case-control studies. IARC Scientific Publications No 32. ISBN 9283211324
3. Clayton D, Hills M (1993). Statistical Models in Epidemiology. Oxford University
Press. ISBN 019852221-5.
4. Giesecke, J (2001); Modern Infectious Disease Epidemiology. Edward Arnold ISBN
034076423-6, 2nd edition.
5. Hennekens CH, Buring JE (1987): Epidemiology in Medicine. Little, Brown & Co., ISBN
0316356360
49
M_BS Supportive Course 4 hours/week 4 credits
Health Systems
Unit 1 Organization and Structure of Health System in India
Concept of six pillars of Health Systems - covering HS concepts, details of
each of the system blocks with reference to India's health care system
Universal Health Coverage - what it is, what is happening in the country and
the issues related to it.
Public health legislation - conceptual aspect of legislations, the various health
legislations in India
Unit 2 Health Policy
Recognizing Policy – What is it? Who makes it? How is it made? What are its
impacts? How is it evaluated? – Introducing the policy triangle framework.
Theories of policy making – introducing the main frameworks and theories of
the policy process.
Unit 3 Policy implementation
Policy implementation and analysis – introducing various frameworks for the
analysis of policy
Trends in the development of the health system in India. Over view of Indian
Health Policy - Introducing a critical analysis of health system development
Unit 3 Health service delivery in India
National Health Mission
National health programmes
Quality systems - NABH, NABL, six sigma, ISO, Accreditation, Indian public
health standards
Unit 4 Health information systems
HMIS and HMS
ICD classification of diseases - Medical certification of deaths, ICD coding for
hospitalizations
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Data sources for health in India
BOOKS RECOMMENDED
1. Mark Britnell, In Search of the Perfect Health System, ISBN 9781137496614
Publication Date September 2015, Publisher Palgrave Macmillan.
2. LeighAnne Olsen, Dara Aisner, and J Michael McGinnis. The Learning Healthcare
System, Institute of Medicine (US) Roundtable on Evidence-Based Medicine;
Washington (DC): National Academies Press (US); 2007. ISBN-13: 978-0-309-10300-
8ISBN-10: 0-309-10300-2
3. OECD iLibrary, Health Care Systems Efficiency and Policy Settings ISBN
9789264094901 (PDF) ;
DOI :10.1787/9789264094901-en http://www.oecd-ilibrary.org/social-issues-
migration-health/health-care-systems_9789264094901-en
4. Corlien M. Varkevisser, Indra Pathmanathan, and Ann Brownlee Designing and
conducting Health Systems Research Projects. KIT, IDRC / 2003-01-01, SBN: Out of
print / 380 pg., e-ISBN: 1-55250-069-1
51
M_BS P01 6 hours/week 3 credits
52