SBTA7010

SBT7010/ Marine Biotech/UNIT1 M.
Tech/2019-2021/SEM-III
SCHOOL OF BIO AND CHEMICAL ENGINEERING

DEPARTMENT OF BIOTECHNOLGY
UNIT: 1
MARINE BIOTECHNOLOGY: SBTA 7010
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SBT7010/ Marine Biotech/UNIT1 M.Tech/2019-2021/SEM-III
UNIT : I
PHYSICAL AND CHEMICAL PROPERTIES OF SEAWATER
The physical and chemical properties of seawater vary according to latitude, depth, nearness to
land, and input of fresh water. Approximately 3.5 percent of seawater is composed of dissolved
compounds, while the other 96.5 percent is pure water. The chemical composition of seawater
reflects such processes as erosion of rock and sediments, volcanic activity, gas exchange with the
atmosphere, the metabolic and breakdown products of organisms, and rain. (For a list of the
principal constituents of seawater, SEE seawater: Dissolved inorganic substances.) In addition to
carbon, the nutrients essential for living organisms include nitrogen and phosphorus, which are
minor constituents of seawater and thus are often limiting factors in organic cycles of the ocean.
Concentrations of phosphorus and nitrogen are generally low in the photic zone because they are
rapidly taken up by marine organisms. The highest concentrations of these nutrients generally are
found below 500 metres, a result of the decay of organisms. Other important elements include
silicon (used in the skeletons of radiolarians and diatoms; SEE Figure 2) and calcium (essential
in the skeletons of many organisms such as fish and corals).
The chemical composition of the atmosphere also affects that of the ocean. For example, carbon
dioxide is absorbed by the ocean and oxygen is released to the atmosphere through the activities
of marine plants. The dumping of pollutants into the sea also can affect the chemical makeup of
the ocean, contrary to earlier assumptions that, for example, toxins could be safely disposed of
there.
The physical and chemical properties of seawater have a great effect on organisms, varying
especially with the size of the creature. As an example, seawater is viscous to very small animals
(less than 1 millimetre [0.039 inch] long) such as ciliates but not to large marine creatures such
as tuna.
PHYSICAL AND CHEMICAL PROPERTIES OF THE OCEAN
Terrestrial habitats exhibit extreme ranges in temperature and receive varying amounts of
sunlight, precipitation, and wind. Additionally, they have other unique chemical and physical
properties that make them suitable places for one species to live, but completely uninhabitable
for another. So, too, oceanic habitats exhibit chemical and physical properties that make certain
ocean zones suitable or unsuitable places for different species to live. In fact, chemical and
physical properties of the ocean are crucial to the survival of marine organisms. This chapter
addresses the chemical (salinity and dissolved gases) and physical (temperature, density,
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buoyancy, waves, tides, and currents) properties of ocean water that are delicately intermingled
to produce one of the most self-sustaining life support systems on earth.
A. Salinity
The ocean is salty. But what makes it salty when the water flowing into it is from freshwater
rivers, streams, and precipitation? Freshwater rivers and streams weather, or slowly wear away,
the rocks and soils they flow over as they make their descent from mountainous and other
inland regions toward the ocean. Rocks and soils release inorganic salts and other chemical
compounds as they are weathered by this continuous flow of water. These inorganic salts and
other chemical compounds are finally deposited in the oceans at the end of their journey from
far away inland places. Additionally, precipitation causes fresh water and chemical compounds
to be released from the atmosphere into the oceans.
Some of the inorganic salts and other chemical compounds become dissolved in the ocean
water once they reach the ocean. Sodium(Na+), chlorine (Cl-), magnesium (Mg2+), and
calcium (Ca2+) are inorganic salts that make up most of the solid material that has become
dissolved in the oceans (Table 2-1). Ocean water is approximately 96.5% pure water and 3.5%
naturally-occurring dissolved substances.
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Table: 1.1.Constituents of seawater.
Constituent Symbol % by
Weight
Chloride Cl- 55.1

Sodium Na+ 30.6
Sulphate SO42- 7.7
Magnesium Mg2+ 3.7
Calcium Ca2+ 1.2

Potassium K+ 1.1
Total 99.4
Salinity is the term used to define the total amount of dissolved inorganic salts in the ocean.
Salinity is measured, in most cases, in parts per thousand (ppt or ‰). For example, a salinity of
1‰, or 1 ppt, is equivalent to 1 gram of salt in 1,000 grams of pure water; a salinity of 30‰, or
30 ppt, is equivalent to 30 grams of salt in 1,000 grams of pure water. There are a variety of
different factors influencing the relative amounts of dissolved inorganic salts in the ocean.
Sunlight, for example, causes only the fresh water part of the ocean to be evaporated, or
absorbed by, the atmosphere, leaving only the inorganic salts behind. Frequent precipitation, on
the other hand, adds fresh water back into the ocean system, thereby diluting the relative
concentrations of inorganic salts in ocean water. Salinity can be varied by (1) changing
The concentration of salts in the ocean, and/or (2) changing the concentration of water in the
ocean. Rates of evaporation and precipitation can thus be related to salinity, with areas of
generally high evaporation having high salinities and areas of high precipitation generally having
lower salinities. Although the amount of dissolved inorganic salts varies among different areas of
the world’s ocean, the relative proportions of the inorganic salts themselves remain very similar
throughout.
Salinities in the ocean range from less than 5‰ where rivers begin to reach coastal areas to as
much as 45‰ in the saltiest oceans. The Black Sea has a relatively low salinity of 18‰, while
salinities in the Red Sea, one of the saltiest seas in the world, range from 40 to 42‰. The
salinity of open waters of the Atlantic Ocean averages 35‰, but may be as low as 15 to 25‰ in
harbors, sounds, and bays, to about 30‰ along the coast. Salinity increases as the distance from
shore , with salinities in continental shelf waters off the Southeastern U.S. ranging from 30 to
36‰, from 36 to 36.2‰ in the Gulf Stream, and from 36.2 to 37‰ in waters transported by
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currents from the Sargasso Sea. The global distribution of sea surface salinities varies
substantially (Fig. 2-1). This variability is mostly due to the relative amounts of precipitation
and evaporation or the addition or removal of atmospheric fresh water. In tropical equatorial
regions, evaporation is approximately equal to precipitation, and we observe a salinity of
34.5‰. Between latitudes 20 and 40° in both hemispheres, evaporation exceeds precipitation,
resulting in high surface water salinities, reaching 35.7‰ (and higher). Near the polar regions
(latitudes higher than 60° N and S), precipita tion is significant and dilutes the seawater,
resulting in much lower salinities (<33‰). The salinity of different ocean areas is a major factor
in determining the types of organisms capable of living there. As you will see in the following
sections, interactions between salinity and temperature affect other physical properties of ocean
water. Salinity also serves as one of the driving forces of major oceanic current systems
B. Temperature
Temperature is one of the most important physical factors affecting the distribution of life in the
oceans. Additionally, temperature controls the rate at which organisms metabolize, or break
down, food items into nutrients that they can use. Exchange of gases, such as oxygen (O2) and
carbon dioxide (CO2), in the marine environment is greatly affected by temperature. Ocean
temperatures also affect the survival of organisms as they develop through various life cycle
stages, such as egg, larval, and juvenile stages. Sea surface temperature in the ocean ranges from
very warm in the tropics to below freezing in the polar regions. Oceanic waters become warmer
as one moves toward the equator and conversely, cooler as one moves toward the poles. Ocean
surface temperatures generally range from 0 to 30°C (32 to 86°F). Because salt lowers the
freezing point of pure water, which is 0°C (32°F), ocean water freezes at about -1.1°C (30°F).
Just as inorganic salts are left behind in the ocean water when freshwater is evaporated into the
atmosphere, only the freshwater portion of the ocean surface freezes, thereby leaving the ocean
water beneath the frozen surface layer saltier. The temperature of the Atlantic Ocean ranges from
-2°C to greater than 30°C (28.4 to 86°F) (Fig. 2-2).Surface temperatures in the ocean also vary
seasonally, with the greatest differences in seasonal temperatures occurring near the poles.
Temperatures remain relatively unchanged near the equator. Off the Southeastern U.S., ocean
temperatures over the continental shelf can range from 9 to 25°C (48 to 77°F) at the surface and
from 9 to 23°C (48 to 73.4°F) at the bottom during winter months to 27 to 30°C (80 to 86°F) at
the surface and 20 to 28°C (68 to 82°F) at the bottom during summer months. Generally, the
deep ocean is very cold, and fewer organisms are capable of surviving these cold temperature
extremes. But the recent discovery of hydrothermal vents along the ocean floor has revealed that
heat is released from the earth’s interior through fissures located on the ocean floor. These
fissures and hydrothermal vents are most often located at the edges of divergent lithospheric
plates (described in Chapter 1) and provide an oasis of warm water in the cold, deep ocean.
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Most ocean waters have a subsurface temperature feature known as a thermocline. A thermocline
is an area in the water column of the ocean where temperature changes very rapidly (Fig. 2-3).
Thermoclines sepa separate warmer surface waters from the cooler waters below. Because
thermoclines are physical features that separate warmer waters from colder waters, they can be
very effective barriers across which gases, nutrients, and in some cases, organisms, move. The
vertical location of the thermocline can change seasonally.
Variations in density, or the ratio of mass to volume, of the ocean are a function of salinity and
temperature. Oceanic waters with higher salinities are more dense than oceanic waters with
lower salinities. In other words, a liter of water with a salinity of 36‰ weighs more than a liter
of water with a salinity of 32‰. Additionally, waters that have cooler temperatures have higher
densities than waters with warmer temperatures. Ocean waters with higher salinities and cooler
temperatures have the greatest densities. Dense water masses actually “sink” toward the ocean
floor, while less dense ocean water masses “float” at or near the ocean’s surface.
Figure: 1.1 Worldwide surface temperature distribution in (℃)

Density
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Figure: 1.2. Fresh water entering an estuary from a river is less dense than the salt water.
In some estuaries a wedge of denser salt water is created as the fresh water overrides dense
water
In coastal areas, fresh water in a river tends to flow toward the ocean along the river’s surface,
while the more dense salt water flows upstream along the bottom of the river (Fig. 2-4). The
degree of mixing between the two water masses varies, depending on river flow, tides, wind, and
the width and depth of the river as it approaches the ocean.
At the beginning of this chapter, we discussed that unique chemical and physical properties, like
salinity and temperature, vary somewhat among the different ocean basins. Water masses from
each ocean basin must ultimately meet since all of the major ocean basins are interconnected and
form one global ocean.
The ocean is, therefore, made up of “layers” of different water masses that are continually
sinking toward the ocean floor or rising toward the ocean surface, depending on their indi vidual
densities. It is the interactions among factors occurring at the ocean’s surface, such as freezing,
evaporation, precipitation, heating, and cooling, that determine the density of a certain water
layer and thus, its vertical position in the “layered” global ocean.
C.Buoyancy
Just as water masses with different densities either sink below or float on top of one another,
objects that are denser than water sink while objects that are less dense than water float.
Buoyancy is defined as the ability to remain afloat in a liquid. Because salt water is more dense
than fresh water, salt water provides greater buoyancy to an object floating on the surface than
does fresh water. A person or a boat is more buoyant in salt water than in fresh water (Fig. 2-5).
Denser liquids have a greater buoyancy force, or the force that makes an object float. In order for
an object to float in a liquid, it must be less dense than that liquid. Some organisms living in the
ocean float on top of the ocean’s surface. These organisms are very buoyant, or less dense, than
the sea water in which they live, and most of their body mass is, in fact, made up of water. Some
of these organisms have specialized structures that make them more buoyant, such as the
balloon-like floats of the Portuguese man-o- war or the air sacs of SARGASSUM, a brown alga
common in the Sargasso Sea of the Atlantic Ocean (Fig. 2-6). SARGASSUM occasionally can be
found washed ashore along the Southeastern U.S. coast. It can also frequently be found floating
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offshore in the Gulf Stream and makes up the “weed line” to which offshore fishermen often
refer.
Oil floats on the surface of the water and many marine organisms produce an oil that makes them
more buoyant. Even fish eggs may contain oil droplets, which enable them to remain at the
surface or suspended in the water column. Increased body surface area and other unique
adaptations, such as elongate spines and antennae, also retard the rate of sinking.
D.Nutrient Uptake and Gas Exchange
The ocean provides a medium for uptake of nutrients and gases and elimination of wastes for all
of the organisms living in it. Plants living in the ocean need “fertilizers,” such as nitrate (NO3 –)
and phosphate (PO4 2–), for continued growth and survival just as terrestrial plants do. Marine
plants get nitrate and phosphate from the ocean water that surrounds them. Marine plants also
need carbon dioxide (CO2) to make their own food through the process of photosynthesis Still
other marine organisms need magnesium (Mg2+), calcium (Ca2+), silica [Si(OH)4], and
bicarbonate HCO3 -) for production of their protective shells. Other marine animals need oxygen
(O2) to breathe, and they give off carbon dioxide (CO2) just as we do here on land.
E. Waves and Tides
Tides are the rise and fall of sea level that is caused by the gravitational pull of the moon
and the sun on the Earth.
Waves are actually energy that moves across the surface of the water. In the scientific
community, this is more commonly known as wind waves as these waves are generated
by wind.
Waves
Wind is a form of energy.
Wind energy blowing along the surface of the ocean is transferred to the ocean as waves
and currents. Waves originate in the open ocean and, in many cases,the waves we see
along the coast were generated far away at sea Waves can be so small that they are hardly
noticeable.
One of the largest waves ever recorded was 34 meters high (112 feet)!
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Earthquakes, submarine landslides, and volcanic eruptions also produce waves by

displacing the water, thereby setting it in motion in the form of a wave.
The wave height increases as the water depth decreases.
An estimated 8,000 waves a day hit an average coastal beach.When ocean waves reach
coastal shorelines, large amounts of energy are transferred from the wave to the beach and
erosion of the land often takes place.
Tides
Tides, or the periodic rise and fall of the ocean’s surface, are caused by the gravitational
pull of the moon and the sun on the earth.
Because the moon is much closer to the earth than the sun, its gravitational pull on the
earth is much greater than that of the sun.
The moon’s gravitational attraction “pulls” the ocean covering the earth’s surface toward the
moon, creating a bulge of water at the point on the earth directly facing the moon (Tidal
bulge). There is a second tidal bulge on the side of the earth that faces away from the moon.
This bulge is the result of the moon’s revolution around the earth.
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Tidal ranges have been classified into three groups: microtidal, mesotidal, and macrotidal. These
groupings were originally defined using the measurement unit of feet rather than meters.Tidal
ranges between 0 and 6 feet as microtidal; between 6 and 12 feet as mesotidal; and greater than
12 feet as macrotidal.
Organisms living in intertidal areas, or areas that are exposed to air during low tides, have
developed special adaptations that enable them to live underwater during high tide, and
completely exposed during low tide.
OCEAN CURRENTS;
Movement of water along the surface of the open ocean, known as surface current
circulation, is primarily caused by wind. Surface currents are slow, broad currents, the effects
of which can extend to depths of 200 m (656 feet).
Ocean currents also have major effects on weather patterns throughout the world. Surface
Currents: Each surface current has its own unique temperature, salinity, density, directional flow,
speed, and well-defined boundaries between adjacent currents.
Thermohaline Circulation: Thermohaline circulation is caused by the vertical movement of water

as a result of temperature and salinity differences. Thermohaline circulation is the major factor
driving deep ocean current patterns.
Cold dense water masses will sink below layers of ocean water.
This phenomenon of “sinking” water layers, or Downwelling, drives thermohaline circulation

in the deep ocean. It is the combination of salinity and temperature of a particular water
mass that determines its vertical position, or the depth to which it “sinks,” in the water
column
Upwelling is the mechanism by which deep ocean waters rise toward the surface.
Upwelling in the open ocean is in part driven by thermohaline circulation which displaces
and “pushes” bottom waters upward as the denser water masses sink to the bottom.
The upwelled bottom waters are rich with nutrients that have accumulated from the constant
rain of recycled material to the sea floor.
These nutrients enter the photic zone and microscopic plant life flourishes, providing food for
a vast number of animals living in surface waters.
An ocean current is any more or less permanent or continuous, directed
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movement of ocean water that flows in one of the Earth's oceans.The currents are generated from
the forces acting upon the water like the earth's rotation, the wind, the temperature and salinity
differences and the gravitation of the moon.
The depth contours, the shoreline and other currents influence the current's direction and
strength. Ocean currents can flow for thousands of kilometers. They are very important in
determining the climates of the continents, especially those regions bordering on the ocean.
Perhaps the most striking example is the Gulf Stream, which makes northwest Europe much
more temperate than any other region at the same latitude. Deep ocean currents are driven by
density and temperature gradients. Thermohaline circulation, also known as the ocean's
conveyor belt, refers to the deep ocean density-driven ocean basin currents. These currents,
which flow under the surface of the ocean and are thus hidden from immediate detection, are
called submarine rivers.
THE WORLD OCEAN: CLASSIFICATION OF MARINE ENVIRONMENTS
Because of the variations in the three dimensional ocean and the changes in light, there are two
primary ways of classifying marine environments. One way is by space and the other way is by
light.
Spatial classification of the marine environment.
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Being pelagic means to be in the water, surrounded by water at any depth. The pelagic division
above the continental shelf is distinguished as the neritic province from the pelagic area above
the open ocean (abyssal plain, oceanic ridges/rises, and trenches) which is call the oceanic
province. Pelagic organisms that can swim relatively well are called nektonic pelagic (or just
nektonic) whereas those that cannot swim, or are feeble swimmers, are called planktonic pelagic
(or just planktonic).
Being benthic means to be on the bottom or on a solid surface. Most benthic habitats are
associated with the bottom of the ocean and are distinguished by depth as follows: inner shelf
(closest to the continent), outer shelf (along the outer edge of the continental shelf next to the
continental slope), bathyal zone (on the continental slope Spatial classification of the marine
environment.
averaging between 200 to 3-6,000 meters), abyssal zone (on the abyssal plain, the relatively
flat deep-sea area that may be 3-6,000 meters deep), and hadal zone (on the bottom of the
trenches - below 6,000 m to 11,000+ meters). Benthic is also used to describe organisms that
live on other organisms, like the barnacles that live on some species of whales. The whales are
pelagic but their barnacles are benthic.
Some species of marine life can be both pelagic and benthic at the same time. An example of
this is the many flatfish (like halibut, sole, and flounder). They tend to rest on the bottom (and
are thus benthic at that time) but can swim through the water in search of food (and are pelagic
while swimming).
Some species of marine life can be both pelagic and benthic at different times of their life. This
is common for most of the benthic invertebrate animals. They begin life as pelagic (water
dwelling) babies but settle after a period (often weeks or months) and become benthic adults.
Most seastars, sea urchins, snails, clams, crabs, lobsters, corals and sea anemones have this life
style.
Using light the marine environment is divided into the photic zone and aphotic zone. The
photic zone is the area where there is enough light for photosynthesis to occur. It changes with
the seasons, latitude, time of day, clarity of the water, as well as with the weather. In general
the photic zone would not be found below 200 meters and would normally be well above this.
The aphotic zone is below the photic zone and is the place where there is no photosynthesis.
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With all of these classifications there are many ways to describe the marine environment. The
oceans are one of the most diverse environments on Earth with incredibly interesting life forms.
Many people say we know more about the surface of the moon than we do about the ocean floor
and this is proved by the constant new discoveries made by marine scientists
MARINE ENVIRONMENT AND PRIMARY PRODUCTIVITY
Classification of the Marine environment
Marine scientists divide the ocean environment into zones. Marine Zones are areas
with uniform physical conditions. Common classifications are based on physical
factors such as depth, light, temperature, salinity, etc. The most basic zonation is
based on substrate: exclusively water environment (pelagic) and bottom interface
(benthic).
The pelagic zone is divided by depth into: nerithic zone, which includes the nearshore areas over
the continental shelves; and the oceanic zone, the areas seaward of the continental shelves. The
oceanic zone is further divided into epipelagic zone (same as photic zone), mesopelagic,
bathypelagic, and abyssopelagic zones. Abyssopelagic zone is water in the deep ocean trenches.
The last three zones are all at aphotic depths.
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The shallowest benthic environments (below the neritic zone) are:
* Supralittoral - bottom substrate above high tides (not part of ocean).
* Littoral - bottom substrate within the intertidal zone.
* Sublittoral - bottom substrate below the lowest

tides. Beyond the continental shelf break are:
* the Bathyal zone (ocean bottom down to the abyssal plain or the average depth of
the ocean floor),
* the Abyssal zone (from 4,000 - 6,000 m depths), and
* the Hadal zone representing the deepest ocean bottom in the deepest trenches.
Physical factors affecting Marine Life Any factor of the physical environment that affects
the survival of marine organisms are physical factors. These physical factors form
barriers between various communities of marine organisms. The most important of these
are:
Light - the primary importance of light is photosynthesis, which will be discussed below.
The depth of penetration of light will determine the birth of a food chain sequence. This
also depends on the light wavelength, and turbidity. Hence most marine organisms live in
the well-lighted neritic zone and in the epipelagic zone where food is abundant. Some
deep water fish use light for body orientation (even dim light), feeding, and predator
avoidance. Some marine organisms produce their own light by biochemical reaction,
known as bioluminescence. Organisms typically living at depths within the aphotic zone,
(or those that are active at night) such as squids, some fish and shrimps, are
bioluminescent. They use light to see, to communicate, and to facilitate predation.
Temperature - the metabolic rate of organisms increases with the temperature of their
bodies. A 10 C increase doubles the metabolic rate. This is directly associated with the
rate of energy production. Endothermic organismscontrol their own temperature from
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within, and ectothermic organisms depend on the temperature of the environment.

Endotherms are mammals and birds. They can survive in a variety of environments
because they can fine-tune their temperature to remain within a narrow range where
metabolic rate is optimum. Ectotherms living in warm conditions are more active, have a
higher reproduction rate, grow faster, but live shorter lives. Temperature range in the
oceans is -50 to 40 C, except around hydrothermal vents where temperatures can be as
high as 110 C. So in general, marine organisms live within a much narrower temperature
range than land organisms. Temperature range on land is -40 to 50 C.
Dissolved Nutrients - Nutrients are chemical substances that play vital role in the growth
and general functioning of an organisms. In the oceans, nutrients in short supply are
nitrogen (N) and
phosphorus (P), and to a lesser extent Calcium and Silicon (limiting nutrients). Marine
plants typically recycle these elements including Fe (iron), Cu (copper), Mg
(magnesium), and Zn (zinc).
Salinity - marine salinity varies from 6 - 40 ppt. This large range is controlled by
evaporation rates, sea ice formation, and freshwater supply rates. The greatest impact of
salinity variation is at the ocean surface, whereas deeper ocean salinity (below the
halocline), is far less variable. Salinity affects the tissues of organisms thoroughosmosis.
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marine organisms are isotonic and no special salinity problems are imposed on them. But
marine fish (bony fish) is hypotonic, that is, their body fluids are less salty than seawater.
Hence, they are constantly losing water and are threatened by dehydration They
overcome this by continuously drinking seawater and expelling the salts through their
gills. They also produce highly concentrated urine in very small amounts in order to
conserve water. Since salinity affects seawater density, it has an important effect on
buoyancy of marine organisms. The average marine fish is denser (1.07) than seawater
(1.025) but it can maintain its buoyancy with gas-filled swim bladders. They are
constantly adjusting gas volumes as they change depth. Very fast swimmers (and benthic
fish) lack swim bladders because they swim so fast that they cannot sink and the benthic
ones do not change depths. Planktons store food as oil and have elaborate ornamentations
to help them float. Whales and other large marine organisms store low-density fat to
increase their buoyancy.
Dissolved gases - gases dissolve more in cold water than in warm water. The two most
important gases to marine organisms are: O2, and CO2. O2 is essential for respiration and
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CO2 for photosynthesis. O2 is less soluble is seawater and tends to be in abundance only
in surface waters. Why? CO2 is more soluble in seawater and its concentration increases
with depth. Why?
P H - average seawater p H is ~ 8.0, and it is maintained within a narrow range by

dissolved CO2.
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The calcium carbonate compensation depth (CCD) is the dividing line between more
alkaline seawater (8.3), and less alkaline seawater (7.6). The CCD is located between
3,500 m - 6,000 m and averages around 4,500 m depth. Below the CCD, calcium
carbonate dissolves, so no CaCO3 shells are formed or survives. Limestone can only be
preserved above the CCD. However, terrestrial CO2 pollution is increasing dissolved
CO2 concentration in the oceans and the CCD is getting shallower.
Planktons
In the biosphere, nearly all living organisms use converted solar energy as the primary
fuel to facilitate their daily activities.
In the oceans, the organisms that capture solar energy and bind it into usable energy for
their own use as well for the use of other organisms are known as phytoplanktons and
seaweed.
Planktons represent a community of organisms associated solely on their mode of

locomotion. All planktons drift or swim very weakly, moving around with the currents or
waves. Many can move vertically through the water column. In general, planktons live in
the euphotic zone, in the upper layers of the open ocean down to the compensation depth.
This is the depth to which 1% of surface light penetrates and photosynthetic organisms
produce just enough carbohydrate to serve all the organisms' needs (zero net
productivity). Although the compensation depth is variable, it averages about 150 m from
the ocean surface.
Planktons are generally diverse, ranging from those with soft, gelatinous bodies with little
or no hard parts, to those encrusted in hard parts. The common planktons are drifting
jellyfish, arrowworms, single-celled organisms, some crustaceans, a few marine
mollusks, some algae, etc. Hence both animals (zooplanktons) and plants are part of the
plankton community.
There are, at least, eight major types of phytoplanktons (the plant variety) responsible for
the nearly all the oceans primary productivity. These phytoplanktons are mostly single-
celled, microscopic organisms that includediatoms, dinoflagellates, cocclithophores,
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silicoflagellates, and extremely very minute varieties callednannoplanktons and

picoplanktons.
Primary Productivity In oceans, phytoplanktons and seaweed together are known as

autotrophs. That is, organisms that make their own food. Such organisms are also known
as primary producers. Organisms that do not make their own food but depend on other
organisms to provide nutrients are heterotrophs. Heterotrophs obtain a share of the
captured solar energy by consuming autotrophs as well as heterotrophs to support their
daily activities. Heterotrophs include primary, secondary, and tertiary consumers.
Primary consumers are herbivores (plant feeders) like manatees and zooplanktons, that
feed directly on autotrophs. Secondary consumers then feed on primary consumers, etc.
The natural chain of nutrient and energy interdependency obtained through food
consumption or feeding is known as the food web or food chain.
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In general, the neritic zone is more productive than the pelagic zone
because of constant supply of nutrients and the low-density surface water
helps planktons to remain afloat on the water surface longer. This
productivity is even higher in areas of coastal upwelling (4 x higher than
non-upwelling coastal areas). The open tropical oceans are less productive
because of stable thermoclines, but in temperate oceans (40 - 60 degree
latitudes), productivity is higher from the seasonal overturn of water masses
bringing up nutrient-rich waters. Polar waters are limited by light
availability.
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MARINE ECOSYSTEM AND BIODIVERSITY
Categories of marine ecosystems

1. Coastal ecosystems includes: estuaries, salt marshes, mangrove swamps,
rocky and sandy shores
2. Coral reefs
3. Oceans
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ESTUARIES
Is an area in which fresh water from a river mixes with salt water from the ocean. A
transition area from the land to the ocean. Other names bay, sound, lagoon, harbour,
bayou.
Characteristics of Estuaries
Water is brackish: a mixture of freshwater and saltwater
 There is a gradient (gradual change) in the salinity
 Near the input from the river 0-5ppt
 In the middle of the estuary 5-25 ppt
 At the ocean > 25 ppt
(ppt= parts per thousand, a unit for salinity)
Important functions of estuaries: for living tnings

1. Habitat
2. Nursery
3. Fisheries
4. Recreation
Plants adapted to salty habitat includes cord grass, eelgrass, glasswort (succulent) and
narrow leaved cattail, variety of macro algae etc., the common sea grass general
includes Manatee grass, turtle grass, and paddle grass.
24
High variety of estuary animals are found in the estuaries, like horseshoe crabs,
mosquitos, oysters, lobsters, Fishes like flounder, sriped bass and many, many birds
like Great white Egret, common tern. Manatee, sea lions like estuary animal also
found in estuaries.
Salt Marshes:
It is a low area that is subject to regular but gentle tides, dominated by grasses. Salt
marshes do not contain trees or shrubs. Salt marsh plants includes Salicornia
(Pickleweed), Spartina (cordgrass).
Mangrove swamps:
Coastal wetlands located in tropical and subtropical zones, characterized by salt-tolerant
trees and shrubs mangrove trees. Different species include red mangrove, with tangled
roots that reach above the water line, form an important habitat for many animals.
The mangrove environment contain

Bacteria: there are different groups of bacteria get nourished by detritus and in turn help
the mangrove ecosystem in different ways. These bacteria perform various activities in
the mangrove ecosystem like
 Photosynthesis
 Nitrogen fixation
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 Methanogenesis
 Production of antibiotics and enzyme (arylsulphatase, L-glutaminase, chitinase,
L-asparaginase, cellulose, protease, phosphatase) etc., which result in the high
productivity.
Actinomycetes: the mangrove environment is a potent source for the isolation of

antibiotic producing actinomycetes.
Fungi: with respect to marine fungal diversity, the mangrove has been devoted to
the wood inhabiting fungi which constitute over 50% of 450 species of obligate
marine fungi.
The mangrove inhabiting fungi are categorized as manglicolous fungi, which
have a recent report of fossil record from the west coast of India.
ROCKY SHORES
Also called rocky intertidal zone many places to live in this habitat, means high
biodiversity. Organisms must be adapted to wave action, changing ride levels. At
low tide, there are often tide pools left behind where you can see starfish,
anemones, crabs, octopus.
SANDY SHORES
Not as much biodiversity as rocky shores because
1. Not much habitat diversity
2. Sand dries out at low tide
Some small things can live in the sand, food for shore birds.
BARRIER ISLANDS
Narrow islands made of sand that provide a buffer for the mainland from the sea
constantly shifting, especially with storms, eg. Dauphin island, Alabama. Barrier
islands are constantly changing.
Coral Reefs
Coral reefs are the structures in the shallow oceans that are built by animals that
belongs to the phylum Cnidaris, the stinging celled animals such as jellyfish and
hydra. Coral polyps resemble small sea anemones with tentacles that can sting
and paralyze prey. called corals, severe a habitat for many diverse organisms,
require two things: warm temperature and sunlight found between 30 N and 30 S
of the equtor.
26
Coral Reefs: they build limestones houses around themselves and stay in one spot
(sessile). Over many generations, the limestone builds up to form a large reef
(takes a long time).
Corals live in a symbiotic relationship with algae called zooxanthellae, the algae
photosynthetic and give the coral food and oxygen, the algae get carbon dioxide
and nutrients from the nitrogenous wastes of the coral.
There are two types of coral reefs

Soft corals
Hard corals
Growing on the surface of other animals, such as sponges, worms, shrimps, crabs,
mollusks. Living in and around the reef are fish,sea turtles, sea snakes, marine
animals.
Coral reef get destructed by

1. Coral bleaching: when temperatures go above normal, the zooxanthellae
(algae) in the coral can be rejected, the coral turns a whitish color and dies
2. Manmade causes: Global warming
3. Physical damage: ships, anchors, tourist drivers, dynamic fishing- reefs are
damaged by physical destruction that may occur when people collect fish
4. Land development and pollution-loss of mangrove forests means more
nutrients and sediments flow out to the sea, coral may die from sediment or
algal blooms.
5. Fish and coral trade
6. Increased exposure to UV due to ozone depletion
MARINE MICROBIAL DIVERSITY

Marine microbes are uniquely important to life as we know it. Since life
most likely began in the oceans, marine microor-ganisms are the closest
living descendants of the original forms of life. They are also major pillars
of the biosphere. Their unique metabolisms allow marine microbes to carry
out many steps of the biogeochemical cycles that other organisms are
unable to complete. The smooth functioning of these cycles is necessary for
life to continue on earth.
27
Early marine microorganisms also helped create the conditions under which
subsequent life developed. More than two billion years ago, the generation
of oxygen by photosynthetic marine microorganisms helped shape the
chemical environment in which plants, animals, and all other life forms
have evolved.
A great deal of research on the biogeography of marine microorganisms has

been carried out, but many unknowns per-sist, and more work is needed to
elucidate and understand their complexity. It is now known that
microorganisms live in every corner of the oceans. Their habitats are
diverse and include open water, sediment, bodies of marine macro- and
microorganisms, estuaries, and hydrothermal vents. By studying these
habitats, scientists have developed a limited ability to predict the
composition of marine microbial communities.
It has also been found that some marine microbes have more cosmopolitan
distributions than others. Recent work has found that most of the ecological
principles that apply to larger organ-isms can also be applied to
microorganisms, including marine microbes, but there are exceptions.
Almost every ecophysiologi-cal parameter in the oceans is thought to have
an impact on the diversity of microbial communities. Most of the direct
interactions marine microorganisms have with larger organisms fall into
one of two broad categories: symbiosis or pathogenesis. Beneficial
microbial symbioses have enabled many invertebrate species to take
advantage of habi-tats that would otherwise be unavailable to them.
Invertebrates in these relationships may also enjoy the benefits of bioactive
compounds microbes may produce to prevent bio-fouling or to ward off
predators. Marine viruses are found in surprisingly high numbers in
seawater, but it is likely that these populations are in equilibrium with their
host populations.
The exact nature of these impacts cannot yet be predicted. Human health
relies on a number of critical equilibria that marine microorganisms broker,
including the balance between viruses and their hosts in the oceans, the
balances that keep harmful algal blooms in check, the processes that control
nutrient concentrations in marine waters, and others.
28
The metabolic capabilities of marine microbes can be put to work in any

number of biotechnology applications, including the manufacture of
industrial products and energy production. Marine microbes are sources of
novel bioactive compounds that may have application as pharmaceuticals
Potential appli-cations for marine microorganisms in ameliorating environ-
mental degradation also exist.
Innovative approaches in research, education, and training are critical for

moving the field of marine microbiology for-ward. Modern research in this
field should embrace the new tools of genomics and metagenomics, but not
to the exclu-sion of other methods of discovery. Education and training in
marine microbiology needs to be multidisciplinary. Arrangements that
expose graduate students and postdoc-toral scientists to laboratories that do
work outside the stu-dents’ immediate fields of focus should be
encouraged.
INTRODUCTION: MARINE MICROBES

AND EARTH’S HABITABILITY
For millions of years after emergence of the first life forms, microbial life
in the oceans influenced the planet’s chemistry, altering the chemical
balance of the oceans and atmosphere and introducing gradients of
oxidizing agents (electron-scav-enging) and reducing agents (electron
sources).
Early microbes introduced molecular oxygen to the atmosphere, an

accomplishment that set the For millions of years after emergence of the
first life forms, microbial life in the oceans influenced the planet’s
chemistry, altering the chemical balance of the oceans and atmosphere and
introducing gradients of oxidizing agents (electron-scav-enging) and
reducing agents (electron sources).
29
Early microbes introduced molecular oxygen to the atmosphere, an

accomplishment that set the stage for the evolution of plants,animals, and
humans.
These microbe-induced changes introduced a new era of chem-istry on the
earth—one based primarily on redox chemistry, the shuttling of electrons
from one molecule to another. Redox chemistry is now the basis of the
balanced biogeochemi-cal and climatological cycles that sustain life on this
planet.
Marine microbes also carry out many of the steps in these bio-geochemical
cycles, making them the workhorses of the biosphere. The owners of a
diverse portfolio of possible activ-ities, marine microbes provide most of
the planet’s metabolic capabilities that keep elemental cycles in motion.
The metabolic rates of marine microbial commu-nities are also high.
Although terrestrial organisms comprise the vast majority of the biomass on
the planet (3,200 gigatons or more; that is, 1015 grams), marine plankton
(which weigh in at about 0.4 gigatons) carry out 45% of the total oxygen
respiration on earth.
The ocean is filled with microorganisms that dwell there per-manently and
other microbes that have been carried there from terrestrial environments.
In research on marine microbes, it is often necessary to arrive at a definition
of what, exactly, a marine microorganism is. Any of a number of
definitions can be used. A simple definition says marine microbes are just
that—any microorganisms found in marine systems. However, this
description does not exclude organ-isms that wash into the oceans from
land and are not suited for growth in the marine environment.
An operational definition of marine microbes describes them as species that

can grow and reproduce in the marine habi-tat. The possibility for growth
can be determined using iso-tope feeding experiments, in which the
organisms in question are monitored for growth on a diet of nutrients like
those found in the marine habitat. The problem with this definition is that
the reverse may not be true; a lack of growth does not necessarily indicate
that a microorganism is not a contributor to the ecosystem. A dormant
30
microbe found in seawater may be biding its time until conditions are right
for its growth. A physiological definition identifies marine microbes as pos-
sessing adaptations specific to the marine environment. Under this
description, marine microorganisms have precise physiological adaptations
or even requirements for sodium.
In some cases, the distinction between true residents of the oceans and
organisms that wash in from land is unimportant. Sometimes, exotic
organisms (or even organisms that die once exposed to the marine
environment) can play a role in the ecology of the oceans.
Regardless of the preferred definition, marine microbes hold a position of
unique importance in the biosphere. They were the original form of life on
earth and today marine microor-ganisms are a primary support for the
biogeochemical cycles that continue to make life possible. A great deal of
research has been carried out to elucidate the biogeography and metabolism
of these organisms, but many unknowns persist. Uppermost on this list of
questions is what effects human-induced changes will have on the services
marine microbes perform for the planet. Research on marine microbiology
must continue or accelerate in order to solve these problems.
MARINE MICROBIAL HABITATS
Marine microbes continue to have a profound influence over the biosphere,

but where, precisely, are marine microbes found? What are their various
habitats like? How do you aseptically sample the habitats? These questions
can be answered in a number of ways, based on the level of resolu-tion that
is of interest (see Table 1). The marine environment occurs on many scales,
and there are many niche levels from which to approach a description of
habitats. For example, a microbe floating in the middle of the Pacific Ocean
31
could be described as free-living,” but this is no more or less accurate than

the descriptors “pelagic” (meaning “open water,” not sediment) or “within
the Central Pacific gyre.”
Perhaps the most important factor in defining marine micro-bial habitats is

the distance over which these organisms inter-act with their environments.
The habitat attributes that are apparent to the naked eye are usually less
important to a marine microbe than the microscopic and submicroscopic
facts, including concentrations of nutrients, the presence of gels and
particulate matter, metal concentrations, light levels, pH, ultraviolet
exposure and solar flux, temperature, oxygen saturation, and redox. Hence,
the scale at which marine micro-bial habitats are most relevant is very
small, but defining the boundaries of these habitats is difficult to
accomplish in a con-trolled laboratory experiment and is even more
difficult to define for a microbial cell embedded in the environment.
Microbial habitats in the oceans are influenced by an almost innumerable

array of forces and factors, including salinity, currents, terrestrial inputs,
and climate. Salinity is relatively constant in the open ocean, but is less
stable in coastal areas. Ocean and seafloor currents have been shown to
behave in ways other than previously thought, greatly affecting our
understanding of transport processes in the deep sea. Terrestrial inputs
create gradients of nutrients, pollutants, and other matter that affect
habitats. Climate effects represent the largest scale of influence on
microbial habitats. Temperature, precipitation, and wind (including
windborne particulate matter) can each impact marine communities in a
number of ways.
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HOW THE MARIEN ENVIRONMENT MAY BE DIVIDED INTO

DIFFERENT MICROBIAL HABITATS
Criterion
Presence Habitats
f other Symbiotic
organisms Free-living
Biofilm
Proximity to the Euphotic (0-150 m)
ocean surface or Mesopelagic (150-1000 m)
sediments Bathopelagic (>1000 m)
Benthos (sediments)
Concentration
of Oligotrophic
nutrients and
required Mesotrophic
growth
substrates Eutrophic
Importantly, marine microbes themselves exert influence on their habitats

by consuming, producing, and sequestering a variety of compounds. Hence,
in the oceans, gradients of materials important to micro- and
macroorganisms alike are often controlled by processes carried out by
microbes.
In the marine environment and elsewhere, interfaces tend to be hotspots of

diversity and biological activity. Marine micro-bial habitats at interfaces
include the air-water, water-sedi-ment, water-ice, and host macroorganism-
water interfaces. The sub-millimeter scale of physical and chemical
variability in these habitats poses a serious challenge to studying inter-face
habitats in detail.
33
CHANGE OVER TIME
Microbial habitats change over many time scales—diel (daily), seasonal,

decadal, and longer. Many of the changes induced by human activities can
impact marine microbial communities and, in turn, can impact the ways by
which those communities modulate the environment and climate. Temporal
changes in marine microbial habitats can be illus-trated by describing three
disparate habitats: the central Pacific gyre, the Chesapeake Bay, and
hydrothermal vents. The central Pacific gyre is an open ocean habitat that
changes on a diel basis, but it has also exhibited changes over decades as
shifts occur between community domination by diatoms and by
picoplankton. The Chesapeake Bay exhibits diel changes, marked seasonal
changes, and profound decadal changes over the past couple of centuries as
human activities have taken their toll. Hydrothermal vents exhibit both
short and long periods of fluctuation, changing over the course of min-utes,
hours, and decades. This variability creates an ephemer-al and
unpredictable habitat for microorganisms.
In the coming years, if observed trends in greenhouse gas emissions

continue, increasing concentrations of atmospheric carbon dioxide are
expected to result in a pH decline of 0.3 in the oceans—a small number that
signifies big changes. This would be an utterly radical transformation of the
ocean habitat for microorganisms and macroorganisms alike. To illustrate, a
similar pH shift in the acidity of human blood would result in acidosis and a
painful death.
INTERACTIONS BETWEEN SEDIMENT-DWELLING AND

PLANKTONIC MARINE MICROBIAL COMMUNITIES
In general, marine microbes in and near sediments interact with and

intercept reductants diffusing from the sediments below and oxidants
diffusing from the water column above. Conversely, planktonic microbes
intercept carbon compounds from photosynthetic activities near the surface
of the ocean and control the downward flux of nutrients to the sediments.
The connections between subsurface and planktonic environ-ments are
34
probably greatest in zones where the sea floor is spreading. However,

details of the interactions between the microbial communities of marine
sediments and communities in the water column are not known—a clear
gap in the cur-rent knowledge.
MARINE SEDIMENTS, BIOFILMS, AND EARLY LIFE
In some ways, the physical and chemical circumstances of marine

sediments are thought to reflect those that nurtured the beginnings of life on
this planet. Studying marine sedi-ment and the life that exists there today
could provide insight into early life:
Redox coupling may have been important to fostering formation of

the organic molecules that propagated early life. Marine sediments
harbor marked layering of redox potentials that enable extensive
redox coupling.
Methane may have been one of the building blocks of

early life, and there are numerous areas of the ocean floor
where methane percolates up from the deep subsurface.
Heat and pressure could have facilitated formation of
early biological molecules, including amino acids. These
conditions exist in
parts of the sea floor that combine high depth with
communication with the earth’s hot core.
Given the pivotal role of iron in the functioning of many enzymes,

iron is thought to have been abundant where enzyme systems first
evolved. Marine sediments are usu-ally iron-rich environments.
Before the dawn of oxygenic photosynthesis, the earth’s atmosphere

was anaerobic, a condition mirrored by sub-surface marine
sediments.
35
It can be argued that shallow microbial mats and biofilms are the most
appropriate systems for modeling early life, as the high metabolic diversity
and spatial separation of metabo-lisms of these arrangements closely reflect
fossilized exam-ples of early microbial communities. Microbial
communities that dwell in marine sediments can be construed as biofilm or
mat communities, given that these communities dwell on the surfaces of
sediment particles (like biofilms) and can form thick accumulations of
interacting cells (like microbial mats).
COMMUNITY COMPOSITION
Although intuitively apparent, it can be difficult to reach agreement on the

precise technical definition of a microbial community. It is largely agreed
that microbial communities are groups of microorganisms that interact and,
together, accomplish more than those same organisms would sepa-rately.
Communities are also influenced by common factors and/or by each other.
However, the question of whether chemical interdependence, a form of
interaction, is required among members of a community is more
controversial. A continuum of interactions, ranging from obligate to
minimal, is thought to exist among members of microbial communi-ties;
strict interdependence is not necessarily a requirement for the designation
“community.” Microbial communities, in which members interact, are
distinct from microbial assem-blages, in which members merely coexist.
PREDICTING THE COMPOSITION OF MARINE MICROBIAL

COMMUNITIES
The particular physical and chemical conditions of a given marine habitat,

including resource availability, select for dis-tinct groups of
microorganisms, and there is a certain amount of predictability in the
character of the resulting community Mapping the microbial species onto
the physical and chemi-cal variability of marine habitats is becoming
increasingly fea-sible in certain habitats and with certain well-described
species. For example, the general distributions of two plank-tonic genera,
Synechococcus and Prochlorococcus, are well-understood information that
can be extrapolated to unknown planktonic communities. The presence of
36
certain broadly-defined functional groups, such as nitrogen fixers or

calcium carbonate producing microbes, can also be predicted.
Most marine microbial communities are not yet fully described, however,
so it is difficult, if not impossible, to pre-dict the species-level composition
of a marine microbial com-munity. Hence, it is often possible to predict the
functions in place in a given marine microbial community, but it is seldom

possible to predict the genera or species present.
The scale and level of resolution of the inquiry into a marine microbial
community are important factors in predictability. Communities can be
unpredictable on a small scale (1 meter) but predictable over larger scales
(kilometers). The level of resolution often determines the results of a study
on commu-nity diversity. Deep, exhaustive sampling can reveal much
greater diversity and complexity than shallow sampling. Predictability in
marine microbial communities that is based on 16S rRNA genes may not be
corroborated by further work at the genome sequence level. Genome
sequences usually reveal much greater and, currently, unpredictable
diversity.
The biome concept may be useful in predicting the composi-tion of

microbial communities. By this reasoning, the energy inputs into an
ecosystem are evaluated, and the role this energy plays in defining the
attributes of the microbial com-munity is examined.
Alternatively, a microbial community may be structured by an evolutionary

history that prevents the spread of that and establishment of new species
into that com-munity. If a community’s history dictates its composition, it
would be very difficult to predict the struc-ture of the community from
transitory features like nutrient status and temperature.
Certain tight associations, like the one between the bacteri-um Vibrio
angulara and the alga Ulva, can allow researchers to use the presence of
one species to predict the presence of a partner species. Recent studies have
shown Ulva propag-ules will not establish themselves on a surface in the
37
absence of chemical signals from their biofilm partner, V. angulara. Hence,

if Ulva is detected in a biofilm, it can be assumed that V. angulara, too, is
present.
In seeking to better predict the structure of marine microbial com-munities,

there is a need to know more about possible keystone species—organisms
that may be present at low or high numbers but perform indispensable
functions for the community.
MICROBIAL DISTRIBUTION IN THE OCEANS
The issue of whether marine microbial species are either cos-mopolitan, or

are more provincial and limited to certain geo-graphical areas, was raised
decades ago. The question endures today because of the bearing it has on
the conservation of bio-diversity. If marine microbes are not cosmopolitan,
then does the international scientific community need to act to preserve the
microbial diversity harbored in endangered habitats?
Current evidence indicates that most marine microbes are not cosmopolitan,
but, instead, are restricted to specific habitat types or geographic locations.
However, there are a few exam-ples of truly cosmopolitan organisms,
including the deep-sea marine group I archaea. As new, higher resolution
technologies become available, further research may show other microor-
ganisms to be more widespread than previously thought.
Free-living marine microbes may be more cosmopolitan than symbionts,

biofilm-associated microbes, and others. Extinction is a real possibility for
symbiotic microbes since they are dependent on the survival of their host
and many, many species of marine macroorganisms are currently
endangered.
It is essential to note that the number of representatives of a given group is

not necessarily linked to the importance of that group in the functioning of
the community. Common organ-isms may not play a critical role in the
dynamics of a given community despite their numbers, and organisms that
38
only muster 0.1% prevalence, like nitrogen fixers, can be of pivotal

importance. Consequently, it is not known whether cosmo-politan
microorganisms like Synechococcus are common because they are essential
to their communities or because they are weedy individualists that can
survive in a wide spec-trum of environments.
39
One observation that appears to support the idea that marine microbes are
largely cosmopolitan is the establish-ment of novel microbial communities
in the wake of a dis-turbance. Often, the new communities are dominated
by microbial types that were previously present in low or unde-tectable
numbers.
The long-standing question of how to taxonomically divide microbes

creates some confusion in discussions about cos-mopolitan distributions. A
working definition of an appropri-ate taxonomic unit is needed to address
research in microbial distribution in the oceans and elsewhere.
Millimeter-scale analyses of marine habitats may help to reveal the
distribution variability of marine microbes over very small spatial scales.
OUTSTANDING QUESTIONS ABOUT MARINE MICROBIAL

DISTRIBUTION
A number of outstanding questions about marine microbial distributions

remain to be addressed. These include:
What is the ecological relevance of the functional gene diversity

observed in marine microbial communities? Does the diversity have
an impact on ecosystem function or long-term stability?
Are changes in microbial communities predictive of changes in

environmental function?
The long-term variability of marine microbial communi-ties is

poorly understood. Can intermittent sampling, like taking
community snapshots, address this question or is continuous
sampling necessary to evaluate community composition shifts?
Are there keystone species in marine microbial commu-nities that
are critical to a given function? How can sci-entists identify those
organisms?
40
FORCES AT WORK IN MAINTAINING STEADY STATE IN

MARINE MICROBIAL COMMUNITIES
Many marine surface waters maintain steady populations of approximately

106 bacteria and 107 viruses per milliliter, a con-dition that may be
determined by nutrient limitations and pre-dation controls enforced by
protists and viruses. It is thought that, in some cases, microbial population
numbers are kept at about an order of magnitude below the carrying
capacity of the habitat—presumably by predation. It is thought that viruses
may coexist with their hosts, helping to structure communities and
diversity, but some studies have shown that the removal of viruses from a
system has no effect on bacterial abundance and community structure.
Protists, on the other hand, are thought to play a more antagonistic, less
discriminating role in steady state maintenance of bacterial cell abundances
by consuming many different types of bacterial prey.
MACROECOLOGICAL THEORY AND OCEAN MICROBES
It only became feasible to test ecological theory as it applies to marine

microbial communities within the last 10 years, after basic questions about
the abundance and species distri-bution of marine microorganisms had been
answered. In gen-eral, ecological concepts like predation, competition, and
diversity appear to be applicable to marine microbial com-munities, but
particular problems related to scale, food webs, the species concept, and the
traditional focus on biochemical and geochemical sciences within marine
science preclude broad application of ecological theory to these
communities.
The small scales relevant to microbes are often not addressed adequately by
traditional macroecology. Also, the structure of food webs in microbial
systems is likely to take on a very dif-ferent form than those described by
traditional macroecology.
The species concept poses a big stumbling block for apply-ing ecological
theory in marine microbial systems. The group-ing of organisms into
clusters of species is the basis of most ecological theory, but most
41
microorganisms do not fall neat-ly into species categories because of their

ability to repro-duce asexually. It may be that genes or genomes are more
appropriate taxonomic units than species for modeling in microbial
systems.
To a certain extent, the biogeochemical and geoscience focus of marine

science has prevented robust integration of eco-logical and evolutionary
theory into marine microbiology. Rigorous inclusion of ecological science
within classical oceanographic science is needed to satisfactorily address
contemporary challenges in marine microbiology. This will require
extensive dialogue between theoretical ecologists, evolutionary scientists,
physical and chemical oceanogra-phers, and marine microbiologists.
With man-made pressures on the world’s natural systems grow-ing

annually, a thorough grasp of the ecology of all environments, the oceans
included, will be necessary to mitigate damages and manage our natural
resources for the benefit of future genera-tions. Because of their short
generation times and relatively sim-ple physiology, microorganisms have
been and will continue to be powerful model systems for testing ecological
theories.
FACTORS THAT IMPACT MARINE MICROBIAL DIVERSITY
The list of factors that impact marine microbial diversity is not a short one.
Nearly every measurable physical chemical, and biotic variable in the
marine environment has been found to increase, decrease, or otherwise alter
microbial diversity. See Table 2 for a list of several of the more important
factors.
For the most part, the extent to which each of these influ-ences actually
operates in the environment and the contexts in which they are important
remain to be determined.
Climate change, which will be felt by marine microbial com-munities as
changes in ocean temperatures, will undoubtedly alter the diversity of
42
communities in unforeseen ways. Climate change should be considered a

major top-down con-troller of microbial communities.
Pollution, including nitrogen inputs due to anthropogenic nitrogen fixation,

also impact marine microbial diversity section on Humans and Marine
Microbes). Anthropogenic nitrogen inputs to the oceans now comprise
about half the total nitrogen inputs to the oceans, a circumstance that has
resulted in vast dead zones in coastal areas and an increased incidence of
harmful algal blooms.
INTERACTIONS BETWEEN MARINE MICROBES AND MARINE

MACROORGANISMS
Most marine ecosystems are fueled by the regeneration of nutrients—

processes mediated by marine microorganisms. This is the most
fundamental service provided by marine microbes; they are responsible for
the cycles that sustain all living things in the oceans.
Microbes also play more direct roles in the health of corals and other
marine organisms. For example, corals die when the bacteria that live on
their surfaces are removed, although the mechanism behind this observation
is not known. Also, bacteria associated with squid eggs have been shown to
pro-tect the eggs from fungal infection. Biofilm bacteria are known to
broadcast attraction cues that affect the settlement of invertebrate larvae in
those biofilms.
SYMBIOSIS AND PATHOGENESIS INTHE OCEANS SYMBIOSES

WITH INVERTEBRATES
A number of marine invertebrates, including species of corals, sponges,
squids, shipworms, and others, are associated with unique species of
bacterial and/or archaeal symbionts. Symbiosis between a microbe and a
marine invertebrate affords the microbe shelter, nutrients, and possibly a
route for reproduction and dispersal, and offers the host a variety of
benefits. In some cases, one invertebrate species may be host to many,
possibly hundreds, of unique microbial species, a detail that has important
43
implications for marine microbial diversity considering the fact that about
1,000 coral species and more than 5,000 sponge species populate the
oceans. The diversity of marine symbionts is an understudied field.
Vertical transmission, passing symbionts from generation to generation to

generation through the gemetes, more easily allows the transmission of
identical clonal organisms between members of an invertebrate species. The
full genome sequences of both vertically and horizontally-transmitted
marine symbionts are currently being studied and will probably shed more
light on the diversity of these organisms.
Vertical transmission is likely to lead to a close symbiosis between the
microbe and its host, since inheriting a symbiont from one;s forbearers
affords few opportunities for host and symbiont-switching. In horizontal
transmission, for host and symbiont-switching. In horizontal transmission,
the host-and symbiont-switching. In horizontal transmission, the host is
more likely to acquire symbionts appropriate for the particular location
where the host settles down.
The diversity of marine microbial symbionts and the closeness of symbiotic

relationships may be determined by the mode of transmission employed by
the invertebrate hosts. Transmission is accomplished either by “horizontal”
or “ver-tical” means. Studies have found that horizontally-transmit-ted
symbionts, which are dispersed in the environment and picked up by
invertebrates, are more taxonomical-ly diverse than vertically-transmitted
symbionts with respect to the internally transcribed spacer (ITS) regions of
their ribosomal DNA. (The ITS region is variable in length and sequence
and can be used to identify and establish relatedness between
microorganisms.) The reason for this differ-ence may be the fact that It is
possible that in the early stages of a new symbiotic rela-tionship, horizontal
transmission of a symbiont can be used effectively, but as the relationship
becomes tighter and more necessary to the survival to the microbe and its
host, trans-mission must shift to the vertical mode, via the gametes.
Symbionts have been known to dispose of those parts of their genomes that
are redundant within the protective confines of the host. Giving up part of
44
its genome can render a microbe less fit for survival outside the host,
making vertical transmis-sion necessary for the survival of the symbiont.
In studying marine symbionts in situ, it can be difficult to sep-arate the

symbionts from the pathogens and transient popu-lations of microbes that
may also be found in and around an invertebrate. Phylotype-specific probes
that preferentially detect microbes with high concentrations of RNA
compared to those with lesser concentrations can be used for this purpose.
Symbiosis and the Invasion of New Environments
Symbioses with bacteria and/or archaea have enabled some marine
invertebrates to exploit habitats that would otherwise be unavailable to
them. Hydrothermal vents, for example, repre-sent an extremely
inhospitable environment to the unprepared tube worm, but the tube worms
that thrive in these sulfur-rich, oligotrophic zones (low in organic carbon)
harbor chemoau-totrophic bacteria that synthesize organic carbon using the
energy from respiring reduced inorganic sulfur compounds. The bacteria
provide the organic compounds to their hosts, allowing the worms to live
on carbon from inorganic sources and open-ing up a new world of habitats
for the worms.
Other examples of symbionts that have enabled invertebrates to take

advantage of a new environment include nitrogen-fix-ing, cellulose
degrading bacterial symbionts, which have allowed their shipworm hosts to
live on a diet of wood, and luminescent bacterial symbionts that enable
squid to hunt in moonlit waters without casting a shadow that could be
detected by predators.
In some cases, obligatory symbioses with microbes can limit the
ability of an inverte-brate to invade a new habitat. The temperature
limits of the bacterial symbiont Symbiodinium, for example, appear to
curb the number of loca-tions where the host coral species can
survive.
Studies show Symbiodinium may also be more sensitive to stress from

anthropogenic (human-made) sources than its host, another factor that could
limit the habitats where the coral could establish itself.
45
Symbionts and the Production of Bioactive Compounds
Many highly bioactive compounds have been isolated from marine

invertebrates, including a number of materials with biomedical or industrial
significance. It is now known that, in many cases, these substances are
produced by symbiotic microbes rather than by the invertebrate
themselves. Microbial symbionts synthesize many secondary metabolites,

e.g., bryozoan and sponge species.
The exact biological function of the bioactive compounds pro-duced by

microbial symbionts is not known, but in the case of cytotoxic compounds
found in sponges and tunicates (a type of marine worm), they may be used
to prevent fouling of the host. Other materials may be used to deter reef fish
from feeding on the invertebrates.
Bioactive compounds produced by microbial symbionts may be useful to

humans in any of a variety of ways. If the microbes that produce them can
be isolated successfully, it may be possible to achieve large-scale
production of these materials by industrial fermentation processes similar to
those commonly employed by pharmaceutical companies for the large scale
production of antibiotics.
MICROBIAL EFFECTS ON THE ECOLOGY AND LIFE HISTORY

OF MARINE INVERTEBRATES
Microbial symbionts can have profound effects on their hosts—effects that

have consequences for the ecology and life history of these invertebrates.
For example, local microbial diversity has been shown to impact the suite
of symbionts harbored by a widespread species of mussel. Studies of the
ITS region of the ribosomal DNA of mussel symbionts and their
environments have shown that one species of mussel has different
populations of bacteria in diff-erent geographic areas, a reflection of the
bacterial populations avail-able for colonization.
In more rigid, obligatory symbioses, like that between the hydrothermal
vent tube worm Riftia and its symbionts, the presence of free-living
46
symbionts is necessary for an invertebrate to colonize a given area, pos-ing

a limitation on the habitats available to that organism. In another example
of a tight relationship (as described previ-ously), the bacterium Vibrio
angulara is required for the algae Ulva to establish itself on a surface.
There is some evidence that the algae to blame for harmful algal blooms
(which have caused as much as $1 billion dam-age over the past decade)
require not only the appropriate nutrients in order to proliferate into a
bloom, but they are also reliant on certain bacterial associates. In other
words, if the bacterium is present, an algae bloom is possible and if the
bacterium is missing then a bloom may not happen. The mechanism behind
this phenomenon is not yet known.
SCALE OF MICROBIAL PROCESSES IN THE SEA

Microbial interactions and processes have implications over a very wide
range of scales in the oceans, from the nanometer scale (0.0000000001
meter) to the kilometer scale (1,000 meters) and greater. The global
outcome of microbial meta-bolic processes is the integration of interactions
on very small scales. In designing studies of marine microbial communities,
it is important to remember the importance of microscales. They should not
be overlooked.
GLOBAL CYCLES OF BIOELEMENTS
The cycles of nitrogen, oxygen, carbon, sulfur, phosphorous, iron, and other
bioelements that sustain life on this planet are driven, in part, by the
microorganisms in the oceans. Microbes are capable of using every natural
compound on the planet and most of the human-made compounds as well.
It is this metabolic flexibility that secures microbes’ importance in the
cycling of the bioelements. Microorganisms control the rate-limiting steps
of the cycles that no other organisms can exe-cute. Microbes also
strengthen the feedback systems that increase the stability of the cycles of
the bioelements. The details of many key processes in the bioelemental
cycles remain unknown, and it is largely unknown which microbes are the
47
largest contributors to these cycles, or if it is even pos-sible for one species

to be dominant.
Although the exact contributions of marine microbes to the biogeochemical

cycles is uncertain, because of their metabol-ic capabilities and their sheer
numbers, marine microorgan-isms are thought to be major players in every
cycle relevant to life. It is estimated that if the oceans were emptied of
microbes, the carbon dioxide in earth’s atmosphere would increase
sevenfold. Moreover, half of the microbially-mediat-ed nitrogen fixation
occurs in the oceans, and nitrification and denitrification, two key processes
that set the pace of the nitrogen cycle, are carried out by microbes. Marine
microbes may also play a role in cloud formation by cycling compounds
such as dimethylsulfide into the atmosphere. A constant efflux of methane
from the surface of the oceans has been detected, and although the process
is not entirely under-stood, it is undoubtedly microbially-mediated.
As more and more of the key players in the cycles of bioele-ments are
cultivated and studied in the laboratory, and as metagenomic studies
continue to contribute to the map-ping of metabolic processes onto ocean
depths and provinces, scientists are coming to a better, more sophisti-cated
understanding of how elemental cycling is carried out in the oceans.
UNIQUE METABOLIC CAPABILITIES OF MARINE MICROBES
Marine microorganisms possess a number of metabolic capa-bilities that

cannot be found in terrestrial microorganisms. As in other ecosystems, the
geochemical habitat drives the evolution of different metabolic capabilities
in the marine environ-ment. For example, cold environments near the arctic
drive different adaptations than high temperature, high pres-sure habitats
near hydrothermal vents. Methane seeps are another example of a uniquely
marine environment that has motivated novel metabolic capabilities. In
methane seeps, high sulfate concentrations combine with high methane
concentrations to favor the anaerobic oxidation of methane, a metabolism
found only in the oceans.
48
The light-driven proton pump proteorhodopsin, which is found only in

marine bacteria, is thought to play an important role in the energy balance
of the biosphere because of its ability to efficiently generate energy from
light. The use of sodium-dependent transporters is also limited to marine
microorganisms.
Marine symbioses, including the symbioses between macroorganisms and
bioluminescent bacteria and between shipworms and nitro-gen-fixing
cellulolytic bacteria, have given rise to many unique metabolic activities.
ADAPTING TO EXTREME ENVIRONMENTS
The oceans are host to many different kinds of extreme environments, and
marine microbes have found numerous ways to thrive in those places by
either changing their biochemistry to cope with the conditions or by
creating barriers to keep the harsh conditions out of their cells.
MARINE VIRUSES
At first glance, the numbers of viruses found in marine waters appears to be
exceedingly high. Locations studied to date have revealed viral counts on
the order of 10,000,000 virus-es per milliliter of water. However, these
numbers are less sur-prising when one considers the number of prospective
micro-bial hosts available to those viruses. Approximately 1,000,000
microbes are found in a milliliter of seawater, making the ratio of viruses to
hosts roughly 10:1, a reason-able proportion for ensuring that a virus meets
up with prospective hosts often enough to propagate itself before is
disintegrates. The half life of viruses averages between two to four days, so
a virus population must be sufficiently large to ensure that at least some of
its members meet up with an appropriate host during that window of time.
Viruses that infect rare hosts may need to live for longer periods of time to
survive the interval between infection events.
Marine viruses likely play a number of important roles in the ecology of

marine microbes. Obviously, viruses act as preda-tors, causing the mortality
of marine microbes. Viruses also help to maintain the high levels of
49
microbial genetic diversity observed in marine ecosystems because hosts

are known to manipulate their genomes to evade diseases. By moving DNA
between the host cells, viruses act as agents of sex, shuffling genetic
information around the community and providing new and surprising
combinations of genes in their hosts.
Viruses can also play a role in the ecology of host cells by lysogenic
conversion, a phenomenon in which a phage changes the phenotype of a
host cell by either introducing genetic material into the host’s genome or by
other means. It has been found, for example, that marine viruses can carry
the genes necessary for photosynthesis, and that these genes are regularly
transferred between host cells of Prochlorococcus. This temporary storage
in viruses and the efficient shuffling of the genes among Prochlorococcus
species probably has had a profound impact on the evolution of these
photosynthesis genes and on the ecology of Prochlorococcus.
The diversity of marine viruses is not limited to bacterio-phages (viruses

that infect and lyse bacteria). Many other forms of viruses, including DNA
and RNA viruses with a wide variety of different sizes, host ranges, and
biological proper-ties, remain almost entirely uncharacterized. Marine
viruses represent a new, unexplored world of diversity.
THE ABUNDANCE AND DISTRIBUTION OF BACTERIAL AND

VIRAL PATHOGENS
In the marine environment, as elsewhere, the distribution of a bacterial or

viral pathogen is directly determined by the viru-lence of the pathogen and
the number of susceptible hosts available. This balance between hosts and
pathogens generates and maintains the diversity of both groups. However,
this deli-cate relationship breaks down in some instances. For example:
Lateral gene transfer between bacteria (carried out by viruses) and

lysogenic conversion may be important
mediators of change from non-pathogenic to pathogen-ic states in
some bacteria.
50
Opportunistic pathogens like Vibrio cholerae do not comply with

the rules of host availability since they can exist outside the host.
Climate-related factors, including temperature, have been shown to

trigger a pathogenic state in certain opportunistic pathogens like
Vibrio shiloi and coral sym-biotic algae called zoozanthellae.
Human activities and chemical pollution can also influ-ence the

abundance of pathogens by stressing and destabilizing microbial
communities.
51
SBTA7010/Marine Biotechnology/UNIT:II M.TECH/2019-2021/SEM-III

UNIT: II

UNIT : II
AQUACULTURE
CRITERIA OF SELECTION OF CANDIDATE SPECIES FOR

AQUACULTURE.
The choice of culture species is, in more ways than one, closely linked with the
objectives of the development and therefore the strategy/approach to be used to
achieve set goals. Not all fish species are suitable for aquaculture. By the same token,
some cultivable species are more appropriate for large-scale, commercial aquaculture
rather than for small-scale operations, as exemplified by the high-value shrimps, the
production of which can hardly be undertaken profitably on a small scale. Also, some
species are best cultured using specific types of enclosures; for example, penaeid
shrimps are best cultured in fish ponds rather than in fish pens, and certain species are
more acceptable in certain countries than in others.
The choice of species for culture depends on a number of factors including the
availability of suitable sites for culture, the biological characteristics of the indigenous
or introduced/exotic species, their suitability for culture, and their acceptability in the
local or international markets, and the availability of technology and other
requirements for their culture.
Principal aquaculture species in Asia
Common Scientific Name Culture Environment

Name System* **
FINFISHES
Milkfish Chanos chanos E, S, I F, B, S
Freshwater eel Anguilla japonica EX, E, I F
Anguilla spp.
Grey mullet Mugil cephalus EX, E, I F, B, S
Cockup Lates calcarifer EX F
Grouper Epinephelus spp. EX S
Porgy Mylio macrocephalus EX S

Mylio spp.
Red porgy Chrysophry major S, I S
Black porgy Acanthopagrus schlegeli S B, S
Tilapia Oreochromis SI F. S
mossambicus
O. nilotica E, SI F, S
Tilapia zillii S F
O. aureus S F
O. mossambicus x O. S F
niloticus
O. niloticus x O. aureus S F
Red tilapia Oreochromis spp. S, I F, B, S
Sweet fish, ayu Plecoglossus altivelis I F
Common carp Cyprinus carpio E, S F
Goldfish (wild) Carassius auratus E, S F
Crucian carp Carassius carassius E, S F
Puntius carp Puntius gonionotus E, S F
Puntius spp.
Rohu Labeo rohita EX, S F
Mrigal Cirrhina mrigala EX, S F
Bottom carp Cirrhina molitorella E, S F
Catla Catla catla EX, S F
Grass carp Ctenopharyngodon idellus E, S F
Black or snail Mylopharyngodon piceus E, S F
carp
Silver carp Hypophthalmichthys EX, E, S F
molitrix
Bighead carp Aristichthys nobilis EX, E, S F
Nilem Osteochilus hasselti EX, E F
Walking catfish Clarias batrachus E, S F
Clarias spp.
MOLLUSCS
Japanese oyster Crassostrea gigas E, I S
Hard clam Metrix lusoria I S
Small abalone Haliotis diversicolor I S
Corbiculas Corbicula fluminea E F
C. formosa E F
Purple clam Soletellina diphos E S
Apple snail Ampullarius insularum S, I F

Blood clam Tegillarca granosa S S
Crassostrea malabonensis E S
C. iredalei EX, E S
C. palmipes S S
C. cuculata EX, S S
C. lugubris E S
C. belcheri E S
C. commercialis S S
Metrix metrix EX, S S
Cockle Andara granos E, S S
Green sea Mytilus smaragdinus EX, E, S S
mussel
REPTILES
Soft-shell turtle Trionyx sinensis I F
Crocodile Crocodilus siamensis I F
C. porocus I F
AMPHIBIANS
Bull frog Rana catasbiana S F
Tiger frog Rana tigrina I F
SEAWEEDS
Gracilaria Gracilaria spp. E B, S
Nori Porphyra spp. E S
Wakame Undaria pinnatifida E S
Green laver Monostroma nitidum E S
*EX = experimental, E = extensive, S = semi-intensive, I = intensive
**F = freshwater, B = brackish water, S = saltwater
Source: Liao, 1988
Huet and Timmermans (1972) list the following criteria for evaluating the suitability of a
species
for culture:
(i) It must withstand the climate of the region in which it will be raised. Thus, the
rearing of coldwater fish like salmonids and trout is limited to temperate regions or
mountain areas of tropical countries because they can not tolerate warm water with its
low oxygen content.
(ii) Its rate of growth must be sufficiently high. Small species, even if they reproduce
well in ponds and accept formulated diets, are not the most suitable for rearing. Also,
the best culture \ecies are those which are low in the food chain, e.g., plankton
feeders, herbivores, and detritivores. Their culture is also least expensive, even on an
intensive scale, because they do not need to be given diets which have a high content
of animal protein.
(iii) It must be able to reproduce successfully under culture conditions. Species for
culture should be able to reproduce in captivity/confinement without needing special
conditions that have to be fulfilled, and which give high returns on eggs and fry.
Although it is possible to rear species whose reproduction in confinement is not
possible at all (e.g., some carps) or whose reproduction under hatchery conditions has
not yet been possible on a commercial scale (e.g., milkfish in the Philippines), the
sustainability of the grow-out operations is hampered by the seasonal unavailability of
wild fry for stocking in fish pens and/or fish ponds.
(iv) It must accept and thrive on abundant and cheap artificial food. Culture species
which feed on cheap artificial feeds and give low feed conversion ratios (FCRs), also
tend to give very good production rates, thus bringing in better financial returns.
(v) It must be acceptable to the consumer. Even if all the foregoing criteria are met by
a candidate species, it is not worth culturing if there is no market for it. It is possible,
though, to promote acceptability of or encourage consumption of a particular species
to ensure that it will eventually sell in the market. (This was the situation with tilapia
in the Philippines prior to the introduction of the bigger-sized, lighter coloured S.
niloticus in the early 1970s.)
(vi) It should support a high population density in ponds. Social and gregarious species
which can grow well to marketable size even under high density conditions in ponds
or tanks (e.g., tilapia) are preferable to those which can be grown together in dense
numbers only up to a certain age beyond which they eat each other (e.g., pike).
(vii) It must be disease-resistant. Reared fish must be resistant to disease and accept
handling and transport without much difficulty. Tilapia is an ideal species for culture
because of its high resistance to disease even in highly intensive culture systems.
A wide variety of fish and aquatic resources is cultured in freshwater, brackishwater,

and marine environments world-wide using different methods (Table 4). Rabanal
(1988a) estimates that there are close to 50 species of freshwater, brackishwater, and
marine finfish species; about 13 crustacean species, 13 molluscan species, 5 seaweed
species, and 5 economic aquatic vertebrates (frogs and other amphibians and turtles
and other reptiles) cultivated in Southeast Asia.
Liao (1988) lists some 25 major finfish species, 18 molluscan species, 2 reptile
species, 2 amphibian species, and 4 seaweed species as the principal species cultured
in Asia. To the list could be added the crustaceans consisting of the
brackishwater/marine penaeid shrimps (mainly Penaeus monodon, P. semisulcatus, P.
japonicus, P. orientalis, P. merguiensis, and Metapenaeus ensis) and the freshwater
prawn of the genus Macrobrachium; the seaweeds Eucheuma, Laminaria, and
Porphyra; and marine finfishes like sea bass and groupers (Baluyut, 1989a).
Examples of aquaculture practices employed in different countries for different species

Country Species Raised Mode of Culture Reference
NEPAL Common carp, Chinese Integrated fish farming Pullin, 1989
carp, Indian carp
THAILAND Penaeid shrimps, Pond and cage culture Sirikul, et
freshwater prawn in freshwater and al., 1988
(Macrobrachium) brackishwater
Cockles and mussels Mariculture along the
coast
Finfishes Cages suspended in
rivers and standing
waters
Clarias batrachus
C. macrocephalus
Tricnogaster pectoralis
Pangasius sp.
Lates calcalifer (sea
bass)
Epinephelus spp.
(grouper)
INDIA Indian carps Integrated rice-fish Mukhopadhyay

culture , 1989
YUGOSLAVI Primary species: Pond culture Wurtz, I960
A Table carp
Aischgrund sp.
Croatian sp.
Secondary species:
European catfish
Tench
Pike
POLAND Carp, tench, pike Pond culture Ackefors, 1989

EAST Carp, tench Pond culture Ackefors, 1989
GERMANY
ECUADOR Penaeid shrimps Pond culture ADCP, 1989b
EL T. aurea Pen culture; floating FAO, 1986
SALVADOR cage culture
T. mossambica
GUATEMAL Tilapia and carp Cage and pond culture FAO, 1986
A
COSTA RICA Tilapia Pond and cage culture FAO, 1986
Trout Semi-intensive
pond culture
Freshwater shrimp
Crayfish
Giant clam
(Anodontis luteola)
ECUADOR Trout Intensive pond and cage FAO, 1986
culture
Trout, marine shrimp Extensive culture
AUSTRALIA Salmonids, marine Intensive/semi- Nelson, 1988
shrimps, molluscs intensive pond culture
FRENCH
POLYNESIA
GUAM Giant clam, seaweeds, Open water culture
and pearl oysters
NEW
CALEDONIA
NEW Tilapia, milkfish, catfish, Less intensive
ZEALAND freshwater prawns, and onshore pond farming
crayfish
Chinese carp
In Africa, the predominant species are the tilapias, carps, mullets, sea bass, and
catfishes; in addition, some salmonids, miscellaneous freshwater fish, molluscs, and
crustaceans are also cultured. Latin America grows miscellaneous exotic fish and
marine shrimps, molluscs, and salmonids. Successful experiments on the artificial
reproduction and pond culture of indigenous finfishes of the genus Colossoma and
Piaractus (locally known as "tambaqui" and "pirapitinga" in Brazil, "cachama" and
"morocoto" in Venezuela, "gamitama" and "parco" in Peru, and "cachama negra" and
"cachama blanco" in Colombia) also give promise of increased yields (Saint-Paul,
1989). The Caribbean rears tilapia, carp, marine and freshwater crustaceans, oysters,
and seaweeds; in the Mediterranean region, salmonids are the prime fish and carps are
secondary fish. In the Pacific, tilapia, milkfish, catfish, salmonids, marine and
freshwater crustaceans, molluscs (including giant clams and pearl oysters), and
seaweeds are cultured but mostly on a pilot/experimental scale (ADCP, 1989a).
Farming methods
 Pond culture Cages

 Pens enclosure Raceway
 Rope Raft
 Monoculture
 Polyculture
 Sewage fed culture
 Organic aquaculture
Cage culture
 Rearing of fish from juvenile stage to commercial size in a volume of water enclosed on
all sides.
 Cage culture is suitable to water areas which can not be
drained.
 Cages of metal, bamboo, mesh or nylon mesh are left in flowing water
 Used for salmon, Trouts, Yellow tail, Sea bass,Murrels
 Cage culture originated in Kampuchia 200 years ago
Types and layouts of cage farms

1. Floating type of cages
2. Submersible type of cages
1. Floating type cage
Consist of:
i. Floating unit in the form of a framework and
• Floating unit contains empty barrels, polythene pipes or pontoons of
plastic.
• Floating units are built into framework impregnated with wood, bamboo spars, Al bars.
ii. Flexible mesh net cage bag suspended under it.

Net is commonly made up of Nylon.
Cages of under water net volume of 200 and 500 m3 are preferred.
It is common practice to have double netting: outer for predators and inner for fish
stock
• When timber is used as framework, 6 or 8 sided structures are made.
• Such cages are linked together by flexible joints.
• Six sided floating cage (six inflatable rubber buoys are used and kept in place by six
fiberglass poles radiating from a steel plate above the cage, looking like inverted
umbrella
• A nylon net is stretched between the laths to prevent leaping fish from escaping.
Arrangements of floating cages Six sided floating cage (six inflatable rubber buoys are
used and kept in place by six fiberglass poles radiating from a steel plate above the cage,
looking like inverted umbrella
A nylon net is stretched between the laths to prevent leaping fish from escaping.
Arrangements of floating cages
2. Submersible type of cage

• Generally used in areas subjected to typhoons and cyclons.
• Used in Japan for yellow tail rearing.
• Can withstand the wind and waves.
• The shape of cage is maintained by attaching weights of upto 10 kgs at each corner of
cage bottom.
• Cage can be lowered or raised in water using ropes.
• Spindle shaped submersible cage
• In hurricane affected areas, Spindle-shaped’ collapsible net cages are used. These cages
are held in position by circular PVC rings of different diameters.
• Under normal conditions, the cages floats on the surface but when cyclones or tycoons
occur, they can be sunk to the bottom by increasing the weights or removing floats
Suitable sites/ conditions for cage farms

• Areas with sufficient movement of water for adequate mixing and aeration.
• Polluted sites are avoided.
• Cages should be installed in the sides of central walkway to facilitate day to day work in
the farm.
Precautions in using and designing cage farms

Designing should be based on conditions prevailing at selected sites.
• Cages should be easy to handle.
• Mooring blocks should be heavy.
• Provision should be made for regular, manual and mechanical removal of the wastes.
• Nets should be changed regularly due to fouling of nets.
Advantages of cage farming
1. Fishes can be stocked at high density rate.

2. Enclosed fishes are protected from predators
3. Water flowing through the cage brings food supply and carries away water.
4. Management and capital investment is less.
5. Effective use of existing water bodies
6. Technically simple
7. Easier stock management and monitoring
Disadvantages
• Cages occupy a space (can disrupt access to navigation), reduce land value.
• Increase sedimentation rate.
• Can introduce diseases
• Uneaten food affect water quality
II) Culture in Pens

• Pens (enclosure): a small enclosure used for confinement or safekeeping of animals.
Ø
Pen culture is defined as raising of fish in a volume of water enclosed on all
sides except bottom
• Transitional structure between ponds and cages.
• Formed by damming a bay, fjord (an arm of sea), estuary, river, lake or reservoir.
• Site: Pens are those where barriers can be constructed, in order to reduce the costs and
in the ease of operation.
• Sites must be sheltered against high winds.
• Depth> 1 m.
Area: enclosure area = 2-7 ha.
Barriers: for blind end- one or one series of enclosure.
For continuous flow- two or two series, one upstream and other downstream
Types of barriers
• Site material dependent barrier
Barrier (Dam) made up of stones, sand, soil or concrete.
such barriers are provided with Screens, which are made of vertical galvanized metal bars
with 1 cm spacing. These prevent the escape of fish.
Nylon net barrier

• Some enclosures are used to partition off areas of open water body, intertidal area of
sea.
• Enclosure is formed on one side by shore and other 3 sides by a wall of nylon netting .
Wire-mesh barrier
• Galvanized wire mesh or chain links are used.
• The net is embedded in the sand or silt at bottom, sealing it properly, to prevent entry of
predators.
Types of enclosures
• Bamboo scaffolding enclosure
• Floating net enclosure
• Single layered pens of nylon webbing
• Double layered pens
Bamboo scaffolding
• In shallow eutrophic bays and in lakes of China, Bamboo scaffolding of various sizes
(2.5 m high, 5-10 m wide) are built.
• Inter space of 1 cm between 2 bamboo splits is essential for exchange of water.
Floating net enclosure

• the enclosure is held in place by concrete block sinkers of 500 kg wt.
• The net if kept floating by floats attached to headrope.
• Horizontal net is stretched at the top of enclosure to prevent fish from jumping
Single layered pens of nylon netting

• Such enclosures are supported by Palm poles (3 m length, 15 cm wide and 5 cm thick)
which are pointed at one end.
• These poles are driven into mud at 50 cm and are 1.5 m apart.
• A 20 mm rope serves as head rope and foot rope.
• Mesh size of nylon net is about 10-20 mm
Double Layered pens

• Suitably used for nurseries for fish or prawn seeds.
• These pens have inner- nylon enclosure
Outer- bamboo mats.
Advantages
1. Pen culture s a continuous process due to continuous supply of
water.
2. Greater production is assured in a limited space with rich food
and oxygen supply.
3. Greater growth is possible as energy is saved towards locomotion and feeding etc.
4. Ease of harvest
5. Availability of natural food and exchange of materials with the
bottom.
Disadvantages
Unfavorable weather- damage the pen-culture sites.
During summer or southwest monsoon, pen culture site may be polluted with dinoflagellates.
Organisms like Balanus and algae adhere to bamboo poles and cause biofouling.
Certain sps of crabs may cut and damage nylon webbing enclosure.
Predator fishes may damage the seed and growing fishes.
the abundance of sea weeds disturb by lowering
oxygen levelthrough release of hydrogen sulphide on death and decay.
Raft culture and its Importance in Aquaculture productivity
• Raft are the rectangular wooden frames floating on the water. They are made of bamboo
and made to flows by empty drums.
• Raft culture is one of the commercially important method of intensive aquaculture.
Connecting ropes are, used to connect culture ropes to a floating raft rope. Also, in
horizontal kelp rope raft culture, they are used to tie together pairs of kelp culture ropes
hanging from parallel floating raft ropes.
• it is made for the culture sessile invertebrates such as oyster, musscles etc.
• Raft culture is a Japanese method originally and this method utilities the techniques of 3D
culture of aquatic organism.
• The bivalves are allowed free and easy acess to diatoms and phytoplanktons which are
the natural food so that they can grow fast.
• Raft is the most dashing rectangular design and it is in a flat structure for support or
transportation over the water.
• Raft are usually kept a float by using any combination of floatable material such as wood
and barrels etc.
• Raft are the rectangular wooden frames floating on the water. They are made of bamboo
and made to flows by empty drums.
• Raft culture is commonly used method through out the world.
Line of rope, mesh shocks are seeded with young spat(seed) which are suspended
vertically from the raft.
length of the rope depends upon the depth of the water and the food availability.
• The method consist of surrounding rope or wire from raft on the surface and the rope
hanged down to the bottom.
• Generally the raft are made up of bamboo measuring 16X25m in size and drag or barrels
are used as floaters.
• The rope or wire are 10m long is ideal and each numbering 500-600 are suspended from
one raft.
•
•
•
FACTORS CONSIDERED FOR RAFT CULTURE.
• Naturally clam water centered from strong winds and waves.
• Water temperatures ranges with 15-30 degree C.
• Water of the area must be completely changed by water current and regular types.
• Water stains ranges from 25-28ppm.
• Water should be rich in Phytoplanktons.
•
CompositeFishCultureorpolyculture
Rearing of different species in a water body is called polyculture. It is also called composite
culture or Polyculture. E.g. culturing of catla , Rohu, Mrigal in a water body.
• 1.1. Fish species involved in composite fish culture
• Depending on the compatibility and type of feeding habits of the fishes, the following
types of fishes of Indian as well as Exotic varieties have been identified and
recommended for culture in the composite fish culture technology :
Species
Feeding habit Feeding zone
Technical parameters that needs to be considered for Composite Fish Culture project are
as follows
1. Selection of Pond:
• The main criteria to be kept in mind while selecting the pond is that the soil should be
water retentive, adequate supply of water is assured and that the pond is not in a flood
prone area. Derelict, semiderelict or swampy ponds can be renovated for fish culture by
dewatering, desilting, repair of the embankments and provision of inlet and outlet. The
pond may be owned by the individual or taken on lease in which case the lease period
should be more or coterminous with the repayment period.The eligible items of pond
development are as follows:
Pond Management
• Pond Management plays a very important role in fish farming before and after the
stocking of fish seed. Various measures that are required to be undertaken in pre and post
stocking practices are tabulated below :
• A) Prestocking:
• In case of new ponds, prestocking operations starts with liming and filling of the pond
with water. However, the first step for existing pond requiring development deals with
clearing the pond of unwanted weeds and fisheseither by manual, mechanical or chemical
means. Different methods are employed for this.
• i)Removal of weeds by Manual/Mechanical or through Chemical means.
• ii)Removal of unwanted and predatory fishes and other animals by repeated netting or
using mahua oil cake @ 2500 kg/ha metre or by sun drying the pond bed.
• iii) Liming - The tanks which are acidic in nature are less productive than alkaline ponds.
Lime is used to bring the pH to the desired level. In addition lime also has the following
effects -
• a) Increases the pH.
• b) Acts as buffer and avoids fluctuations of pH.
• c) It increases the resistance of soil to parasites.
• d) Its toxic effect kills the parasites; and
• e) It hastens organic decomposition.
• The normal doses of the lime desired ranges from 200 to 250 Kg/ha.
The pond is required to be filled with rain water or water from other sources after liming
in case it is a new pond.
Fertilization
• Fertilization of the pond is an important means of intensifying fish culture by increasing
the natural productivity of the pond. The fertilization schedule has to be prepared after
studying the quality of the pond soil. A combination of both Organic and Inorganic
fertilisers may be used for best results. The fertiliser programme has to be suitably
modified depending on the growth of the fish, available food reserve in the pond, physico
chemical conditions of the pond and climatic conditions.
• a) Organic
• b) Inorganic
• B) STOCKING:
• The pond will be ready for stocking after 15 days of application of fertilisers. Fish
fingerlings of 10 cm size (approx) should be used for stocking @ 5000 nos. per hectare.
However if fingerlings of smaller size are used, suitable allowance may be made
accounting for mortality.Depending on availability of seed and market condition,
stocking can be of 3, 4 or 6 species combination in the following ratio.
Post stocking
a) Supplementary feeding:
• Fishes need much more food than what is available naturally in the pond. Fishes can be
fed with a mixture of bran and oilcake in equal quantities daily. The feed should be
placed on a bamboo tray and lowered to the pond bottom or it can be sprayed at the
corners. After some time the fishes will get used to this type of feeding and aggregate at
the same place at particular time.The recommended feeding rate is as under:
• b) Manuring:
• i) Organic manuring may be done in monthly instalments @ 1000 kg/ha.
• ii) Inorganic fertilisation may be done at monthly intervals alternating with organic
manuring. However, the monthly rate of fertilisation will depend on pond productivity
and the growth of the fishes. It should be ensured that excess fertilisation does not take
place which may result in eutrophication.
• D) Harvesting:
• Harvesting is generally done at the end of 1 st year, when the fishes attain average weight
of 750 gms to 1.25 kg. A production of 4 to 5 tons/ha can be obtained in a year. However,
for the purpose of working out economics' a production level of 3 tons/ha/year may be
considered. Harvesting is done by partial dewatering and repeated netting. In some cases
complete dewatering of ponds is resorted to.
FISH CULTURE (SEABASS CULTURE)
Introduction
Lates calcarifer (Bloch), commonly called the giant sea perch or seabass, is an
economically important food fish in the tropical and subtropical regions of Asia and
the Pacific. It is commercially cultivated in Thailand, Malaysia, Singapore, Indonesia,
Hong Kong and Taiwan, in both brackishwater and freshwater ponds, as well as in
cages in coastal waters. Because of its
relatively high market value, it has become an attractive commodity of both large to
small-scale aquaculture enterprises. However, the major constraint to rapid expansion
of seabass culture has been the inconsistent supply of fry collected from the wild. It
fluctuates widely from year to year, making forward planning for production difficult.
In the early 1970's, Thai scientists have achieved success in the breeding of seabass
under captive conditions. Completion of its life cycle has also been accomplished.
Growth performance of the hatchery-bred fry has been shown to be comparable with
that of fry collected from the wild. Thailand is presently producing more than 100
million fry annually (Anon. 1985), with the Satul Fisheries Station producing more
than 30 million (Kungvankij 1984). Thus, the seabass culture industry in Thailand is
now assured of sufficient and consistent supply of fry.
In order to extend the technology of seabass culture, this manual is prepared to serve
as a practical guide for extension workers and farmers. Its contents are based on
research findings in addition to many years of accumulated practical experience and
field observations.
1. T axonomy
The above is an accepted taxonomic classification of seabass or giant perch. Seabass

has been placed under several families by various authors in the past (e.g. the grouper
family, Serranidae and family Latidae, etc.) However, Centropomidae is the
commonly accepted familya name of this species, and the recognized generic
name is Lates. Other names such as Perca, Pseudolates, Holocantrus, Coins,
Plectropoma,Latris, and Pleotopomus were also given by various authors who
collected the fish specimens from different areas. Bloch (Schneider 1801) stated that
Lates calcarifer occured in Japan Sea but named it as Holocentrus calcarifer.
The common local names of this species are listed below:
Common Giant perch, white seabass, silver seaperch, giant

:
English name perch, palmer, cock-up seabass
SBT 1304 – MARINE UNIT II B.TECH
BIOTECHNOLOGY BIOTECHNOLOGY
India : Begti, bekti, dangara, voliji, fitadar,
todah East Bengal : Kora, baor
Sri Lanka : Modha koliya, keduwa
Thailand : Pla kapong kao, pla
kapong Malaysia : Saikap, kakap
North Borneo : Ikan, salung-sung
Vietnam : Ca-chem, cavuot
Kampuchea : Tvey spong
Philippines : Kakap, apahap, bulgan, salongsong, katuyot, matang
pusa Indonesia : Kakap, pelak, petcham, telap
Australia and
Papua New
Guinea : Barramundi
2. Morphology and distinctive characters (after FAO 1974)
Body elongated, compressed, with deep caudal peduncle. Head pointed, with concave
dorsal profile becoming convex in front of dorsal fin. Mouth large, slightly oblique,
upper jaw reaching to behind eye; teeth villiform, no canine teeth present. Lower edge
of preoperculum with strong spine; operculum with a small spine and with a serrated
flap above original of lateral line. Dorsal fin with 7 to 9 spines and 10 to 11 soft rays; a
very deep notch almost dividing spiny from soft part of fin; pectoral fin short and
rounded; several short, strong serrations above its base; dorsal and anal fins both have
scaly sheath. Anal fin round, with three spines and 7–8 soft rays; caudal fin rounded.
Scale large ctenoid (rough to touch).
Page | 10
SBT two
Colour: – MARINEeither olive brown above
1304 phases, UNIT II silver sides
with B.TECH
and belly in marine
environment and golden brown in freshwater environment (usually juveniles). Blue-
green or greyish above and silver below (adult).
3. Distribution
3.1 Geographic distribution
Seabass is widely distributed in tropical and sub-tropical areas of the Western Pacific
and Indian Ocean, between longitude 50°E - 160°W latitude 24°N – 25°S (Fig. 1). It
occurs throughout the northern part of Asia, southward to Queensland (Australia),
westward to East Africa (FAO 1974).
3.2 Ecological distribution
Seabass is a euryhaline and catadromous species. Sexually mature fish are found in the
river mouths, lakes (e.g. Songkhla lake) or lagoons where the salinity and depth range
between 30–32 ppt and 10–15m, respectively. The newly-hatched larvae (15–20 days
old or 0.4–0.7cm) are distributed along the coastline of brackishwater estuaries while
the 1-cm size larvae can be found in freshwater bodies e.g. rice fields, lakes, etc.
(Bhatia and Kungvankij 1971). Under natural condition, seabass grows in freshwate
and migrates to more saline water for spawning.
4. L ife history
Seabass spends most of its growing period (2–3 years) in freshwater bodies such as
rivers and lakes which are connected to the sea. It has a rapid growth rate, often
attaining a size of 3–5 kg within 2–3 years. Adult fish (3–4 years) migrate towards the
mouth of the river from inland waters into the sea where the salinity ranges between
30–32 ppt for gonadal maturation and subsequent spawning. The fish spawns
according to the lunar cycle (usually at the onset of the new moon or the full moon)
during late evening (1800–2000 hours) usually in synchrony with the incoming tide.
This allows the eggs and the hatchlings to drift into estuaries. Here, larval
development takes place after which they migrate further upstream to grow. At
present, it is not known whether the spent fish migrates upstream or spends the rest of
its life in the marine environment (Fig. 2).
Smith (1965) noted that some fish spend their whole life in freshwater environment
where they grow to a length of 65 cm and 19.8 kg body weight. The gonads of such
fish are usually undeveloped. In the marine environment, seabass attaining a length of
1.7 m have been recorded in the Indo-Australian region (Weber and Beaufort 1936).
Page | 10
Fig. 1. Geographic distribution of Lates calcarifer. (After FAO 1974)
Fig. 2 Migration pattern of Lates calcarifer Bloch
5. F eeding habits
Page | 10
Although the adult seabass is regarded as a voracious carnivore, juveniles are
omnivores. Analysis of stomach content of wild specimens (1–10 cm) show that about
20% consists plankton, primarily diatom and algae and the rest are made up to small
shrimp, fish, etc. (Kungvankij 1971). Fish of more than 20 cm, the stomach content
consists of 100% animal prey: 70% crustaceans (such as shrimp and small crab) and
30% small fishes. The fish species found in the guts at this stage are mainly
slipmouths or or pony fish (Leiognatus sp.) and mullets (Mugil sp).
6. S ex determination
Identification of the sexes is difficult except during the spawning season. There are
some dimorphic characters that are indicative of sex (Fig. 3).
 Snout of the make fish can be slightly curved while that of the female is atraight.
 The male has a more slender body than the female.
 Weight of the female is heavier than males of the same size.
 The scales near the cloaca of the males are thickers than the female during the
spawning season.
 During the spawning season, abdomen of the female is relatively more bulging
than the males.
7. S exual maturity
In the early life stages (1.5–2.5 kg body weight) majority of the seabass appear to be
male but when they attain a body weight of 4–6 kg majority become female. After
culture period of 3–4 years, however, in the same age group of seabass both sexes can
be found and identified as mentioned above. In a fully mature female, the diameter of
the oocysts usually range from 0.4 ro
0.5 mm.
8. F ecundity and spawning
The fecundity of seabass is related to the size and weight of the fish. Gonad samples
obtained from 18 females of body weight ranging from 5.5 to 11 kg gave a range of
2.1 to 7.1 million eggs (Wongsomnuk and Maneewongsa 1976) as illustrated in Table
1. Observations by the Australian Department of Agriculture (Anon. 1975) showed
that a 12 kg fish had 7.5 million eggs; a 19 kg fish 8.5 million and a 22 kg. fish, 17
million.
Figure 3 Photograph of adult m le and female seabass
Table 1. Relationship between size of fish and number of eggs from the gonads of
seabass (Lates calcarifer Bloch). (After Wongsomnuk and Maneewongsa 1976)
Total length Weight Fecundity (million eggs)

(cm)
Average
70 – 75 5.5 3.1
76 – 80 8.1 3.2
81 – 85 9.1 7.2
86 – 90 10.5 8.1
91 – 95 11.0 5.9
Seabass spawn all year round (Kungvankij 1984) with the peak season occuring during
April- August and large number of fry (1 cm in size) can be collected during May to
August (Bhatia and Kungvankij 1971).
Based on studies of spawning activity under tank conditions, mature male and female
fish separate from the school and cease feeding about a week prior to spawning. As the
female attains full maturity, there ia an increase in play activity with the male. The
ripe male and female then swim together more frequently near the water surface as
spawning time approaches. The fish spawns repeatedly in batches for 7 days.
Spawning occurs during late evening (1800–2200 hours).
Culture of Seabass
Seabass has been commercially cultivated in brackishwater and freshwater ponds and
marine cages in many Southeast Asian countries. While the cagae culture technology
is now established, grow-out techniques in pond are still are still in the developmental
stages. Although considerable progress has been made over the past ten years, many
problems remained unsolved.
The major problems that are always encountered during culture period are: (a)
cannibalism during young stage (1–20 g), (b) dependence on trash fish as a main diet
which has a very limited supply in many countries.
Despite some imperfections, the basic techniques of seabass culture are now
developed and have been considered economically viable.
1. C ulture techniques
As mentioned above, cannibalism is one of the most serious problems in seabass

culture. High mortality is often encountered when uneven sizes of the fish are stocked.
This has been noted to occur mostly where the fish are very young (1–20 cm in length,
the first two months of culture). To minimize this problem, culture of seabass should
be approached in two phases i.e. the nursery phase and the grow-out phase.
1.1 Nursery
The main purpose of the nursery is to culture the fry from hatchery (1–2.5 cm in size)
to juvenile size (8–10 cm). This can solve the problem of space competition in the
nursery tanks. Beyond the nursing period, the juveniles can be graded into different
size groups and stocked in separate grow-out ponds. It has been observed that the
juveniles from the nurseries perform better in terms of growth and survival than those
stocked directly into the grow-out ponds.
Nursing the fry in concrete tanks is not recommended as accumulation of excess feed
on the bottom of the tank cannot be avoided. Such accumulation can cause bacterial
disease. In addition, constant contact with the tank wall results in wounded fish and
subsequent bacterial infection
1.1.1 Nursery pond design
Nursery pond size ranges from 500 to 2000 m2 with water depth of 50–80 cm. The
pond has separate inlet and outlet gates to facilitate water exchange. Pond bottom
should be flat and sloping towards the harvesting or drainage gate. Inlet and outlet
gates are provided with a fine screen (1 mm mesh size) to prevent predators and
competitors from entering and fry from escaping the pond.
Fry ranging from 1–2.5 cm are suitable for stocking in the nursery ponds. Stocking
density is between 20–50 individuals per square meter.
1.1.2 Pond preparation
A wellprepared pond is important as predators and competitors can endanger the stocked fry.
Some farmers still practice very crude farming techniques of drying the pond bottom
and immediately filling with water and stocking fry directly for nursing. Feeding is
entirely dependent on supplementary feed such as chopped or grounded trash fish and
is done twice daily in the morning (1800 hours) and afternoon (1700 hours). In this
method, the survival rate and growth rate are low.
To enhance production, the following improved pond preparation techniques are done:
The nursery pond must be drained and dried until the bottom soil cracks to release
toxic gases, oxidize mineralized nutrients, eradicate some pests and predators. In cases
where the pond cannot be completely drained, derris root (rotinone) may be applied at
the rate of 20 kg/ha toeradicate unwanted species. Derris root is prepared by cutting
them into small pieces, crushing and soaking in water overnight. Only the solution is
applied to the pond. If derris root is not available, a mixture of 50 kg/ha of ammonium
sulfate (21-0-0) with lime at a ratio of 1:50 will be sufficient to weed out unwanted
species. The mixture is applied to the portions of pond with water. The use of any
chemicals or inorganic pesticides is not recommended because the residual effect
remains for many years and can reduce the pond production. If pond soil is acidic, the
pond bottom should be neutralized with lime before letting the water in.
Production techniques of juvenile in nursery ponds have been improved recently at

Satul Fishery Station, Thailand. The improved technique is based on the live food
production in the pond supplemented with chopped or grounded trash fish. After
neutralizing pond bottom by liming, organic fertilizer (chicken manure) is applied at
the rate of 500 kg/ha. Then water depth is gradually increased for the propagation of
natural food. Two to three weeks prior to stocking,
newly-hatched Artemia nauplii are inoculated into the pond (1 kg of dry cyst/ha).
Artemia will utilize the natural food as feed for growth and will reach adult stage
within 10–14 days. The fry are immediately stocked at the rate of 20–50 individual per
square meter.
Another approach to the improved technique is to stock Artemia nauplii in the separate
pond and grow them into adult. Adults could be harvested daily to feed the fry.
1.1.3 Nursery pond management
Although seabass can be cultured in either freshwater or saltwater, fry must be

acclimatized to the salinity and temperature prevailing in the pond on stocking to
prevent loss.
Acclimatization is done in the following manner: transfer the fry to a tank, then
gradually add nursery pond water. This can be completed within one day or more
depending on the salinity difference. If the temperature and salinity in transport bag
does not differ by more than 5°C and 5 ppt with the pond water, acclimation can be
done by floating the bag in the pond for sometime to even out temperature difference.
Pond water is then added gradually until both salinity become equal and the fry can be
released.
Seabass fry are stocked in the nursery pond at a density of 20–50 fry/m2. Stocking is
usually done in the erly morning (0600–0900 hours) or early evening (2000–2200
hours) when the temperature is cooler.
Water replenishment is needed to prevent deterioration of pond water quality due to

the decomposition of uneaten feed or excess growth of natural food. Normally, 30% of
pond water is changed daily.
Supplementary feed is given daily. The feed used for nursing seabass is chopped and
grounded (4–6 mm3) trash fish, normally at the rate of 100% of biomass given twice
daily in the first week (at 0900–1700 hours), gradually reduced to 60% for the second
week and 40% in the third week. This has been found to be most effective feeding
strategy for ponds without artemia inoculation.
The application of supplementary feed is a vital operational activity that should be

done properly, if not, contamination of culture water and wastage of feeds result.
Although the seabass in nature prefer live food, the fish can be trained to feed on dead
animal. Prior to feeding, the fish should be attracted by sound (such as tapping a
bamboo pole in the water) to induce them to form a school. Feeding time and place
should be fixed. After the fish have formed a school, small amounts of feed are
introduced by spreading into the water within the school of fish fry. It must be
remembered that seabass never eat the feed when it sinks to the pond bottom.
Therefore, feeding should be slow. When the fish are filled to satiation, they disappear
thus feeding should be stopped. The same procedure should be followed at every
feeding time. The first few days after stocking, feeding should be 5 to 6 times a day to
teach them to accept dead feed. Once the fish is accustomed to it which takes about 5–
7 days, feeding frequency is reduced to twice daily. In nurseries where Artemia is the
main diet, once the Artemia population has thinned down, chopped or grounded trash
fish can be supplemented using above described practice.
The nursing period lasts about 30–45 days until fingerling stage (size 5–10 cm). At
this stage, they are ready for transfer to grow-out ponds.
1.1.4 Nursing in net cages
Nursing of seabass fry (1–2.5 cm to 8–10 cm) in cages is an approach to the nursery
phase. The method has been successful since conducive environmental conditions
such as flow through water, necessary for good health and growth of fish are used. It is
likewise easy to maintain and require very little capital investment.
1.1.5 Nursing cage design and investment
The most convenient cage design is a rectangular cage made of synthetic netting
attached to wooden frames. It is either (a) kept afloat by styrofoam, plastic or metal
drum, or (b) stationary by fastening to a bamboo or wooden pole at each corner. The
size of cages vary from 3 cubic meter (3 × 1 × 1m) to 10 cubic meters (5 × 2 × 1m).
The mesh size of the net used for nursery cages is 1.0 mm. The cages may be installed
in the river, coastal area or in a pond. Suitable sites for net cages should be free from
biofoulers since the mesh size of a nursery cage is very small. Cages are easily
damaged in strong currents and clogging by biofoulers. (Fig. 20)
1.1.6 Nursery cage management
Seabass fry (1–2.5 cm in size) are stocked in the nursery cage at the rate of 80–100 per
square meter.
Stocking and feeding activity are the same as in nursery pond culture practice.
The net cages should be checked daily to ensure that the cages are not damaged by
animals such as crabs or clogged with fouling organisms. Cleaning of the cages should
be done every other day by brushing. This will allow water to pass through the cages
naturally.
Fig. 20 Floating nursery cage for seabass.
After the nursing period of 30–45 days (in pond or cages) or when the fry have
reached 5–10 gm, these are ready for transfer to grow-out ponds. Prior to stocking in
grow-out ponds, grading procedure should be applied. Fish are graded into several
sizes. It will give maximum advantage if the various sizes are stocked in separate
ponds to prevent cannibalism.
1.2 Grow-out
The grow-out phase involves the rearing of the seabass from juvenile to marketable
size. Marketable size requirement of seabass vary country to country e.g. Malaysia,
Thailand, Hong Kong and Singapore. The normally accepted marketable size of
seabass among these countries and region is between 700–1200 g while in the
Philippines, marketable size is between 300–400
g. The culture period in grow-out phase also vary from 3–4 months (to produce 300–
400) to 8– 12 months.
2. C age culture
Cage culture of seabass is quite well developed in Thailand, Malaysia, Indonesia,

Hong Kong and Singapore. The success of marine cage culture of seabass and its
economical viability have contributed significantly to large scale development of this
aquaculture system
2.1 Suitable site for cage culture
Criteria for selecting a suitable site for cage culture of seabass include:
a. Protection from strong wind and waves. The cage culture site should preferably
be located in protected bays, lagoons, sheltered coves or inland sea.
b. Water circulation. The site should preferably be located in an area where
influenc of tidal fluctuation is not pronounced. Avoid installing cages where the
current velocity is strong.
c. Salinity. Suitable site for seabass culture should have a salinity ranging from 13–30 ppt.
d. Biofouling. The site should be far from the area where biofoulers abound.
e. Water quality. The site should be far from the sources of domestic, industrial
and agricultural pollution and other environmental hazards.
2.2 Design and construction of net cages
In general, square and rectangular cages with size varying from 20 to 100 m3 are
preferable because they are easy to construct, manage and maintain. Seabass cages
usually are made of polyethelene netting with the mesh size ranging from 2 to 8 cm.
The choice of mesh size depends on the size of the fish (Table 8).
There are two types of cages used in seabass culture:
(a) Floating cages
The net cages are attached to wooden, GI pipe or bamboo frames. The cage is kept
afloat by floating material such as metal, plastic, styrofoam drum or bamboo. The
shape of the cage is maintained with the use of concrete weights attached to the
corners of the cage bottom (Fig. 22).The most manageable size for a floating cage is
50 m3 (5 × 5 × 2m). This cage dimension is easy to change when clogged with fouling
organisms.
(b) Stationary cages
The cage is fastened to the bamboo or wooden poles installed at its four
corners (Fig. 21). Stationary cages are popularly used in shallow bays since they are
easy to install.
2.3 Cage culture management and techniques
Prior to stocking seabass juvenile in cages, fish should be acclimatized to the ambient
temperature and salinity prevailing in the cages. The fish should be graded into several
size
groups and stocked in separate cages. The stocking time should be done in the early
mornings (0600–0800 hours) or late in the evening (2000–2200 hours) when the
temperature is cooler.
Stocking density in cages is usually between 40–50 fish per cubic meter. Two to three
months thereafter, when the fish have attained a weight between 150–200 g, the
stocking density should be reduced to 10–20 fish per cubic meter. Table 9 shows the
growth of seabass under varying densities in cages. There should be spare cages as
these are necessary for transfer of stock and to effect immediate change of net in the
previously stocked cage once it has become clogged with fouling organisms. Changing
cages allows for grading and controlling stock density.
2.4 Feeds and feeding
Feed is the major constraint confronting the seabass culture industry. At present, trash
fish is the only known feed stuff used in seabass culture. Chopped trash fish are given
twice daily in the morning at 0800 hours and afternoon at 1700 hours at the overall
rate of 10% of total biomass in the first two months of culture. After two months,
feeding is reduced to once daily and given in the afternoon at the rate of 5% of the
total biomass. Food should be given only when the fish swim near the surface to eat.
Table shows The choice of netting mesh size of fish.
mesh size size of fish
0.5 cm 1–2 cm
1 cm 5–10 cm
2 cm 20–30 cm
4 cm bigger than 25 cm
FIG. 21 STATIONARY CAG S
FLOATING CAGES
[Type text] [Type text] [Type text]
Table shows the Monthly growth of seabass at different stocking
densities in cages.
Culture Stocking density

period
(mont 16/m2 24/m2 32/m2
h)
0 67.80 g 67.80 g 67.80 g
1 132.33 g 137.53 g 139.20 g
2 225.20 g 229.10 g 225.50 g
3 262.88 g 267.50 g 264.11 g
4 326.15 g 331.97 g 311.50 g
5 381.08 g 384.87 g 358.77 g
6 498.55 g 487.06 g 455.40 g
Since the supply of trash fish is insufficient and expensive in some countries, its use is
minimized by mixing rice bran or broken rice to the trash fish (Table 10). However,
even with these cost cutting measures, feed cost remain quite high.
A very recent development on improving the dietary intake of seabass is the

introduction of moist feed. So far, the use is still on experimental stage. The feed
composition recommended is presented at Table 11.
2.5 Fish cage management
Regular observation of cages is required. Since fish cages are immersed under water
all the time, they are vulnerable to destruction by aquatic animals such as crabs, otter,
etc. If damaged, they should be repaired immediately or replaced with a new one.
In addition to biofouling, the net walls of cages are subjected to siltation and clogging.
Biofouling is unavoidable since the net walls usually represent a convenient surface
for attachment by organisms such as amphipod, polycheate, barnacles, molluscan
spats, etc. These could lead to clogging and reduce exchange of water and may result
in unnecessary stress to the cultured fish due to low oxygen and accumulation of
wastes. Feeding and growth would likewise be affected.
To date, mechanical cleaning of fouled nets is still the most efficient and cheap
method. In areas where fouling organisms are abundant, rotational usage of net cage is
highly recommended.
3. P ond culture
Although methods of pond culture of seabass have been practiced for over 20 years in
Southeast Asia and Australia, not much has been done on the commercial scale. At
present, culture of seabass in brackishwater pond has been identified in some countries
as having tremendous market potential and high profitability. These, however, can be
achieved if conditions are met such as adequate fry supply, availability of suitable site
and properly designed fish farm. Supply of fry from the wild is very limited. As with
cage culture, it is one of the constraints in the intensification of seabass culture in
ponds. However, with the success in artificial propagation of seabass, fry supply may
largely come from this source in the future. A comparison of hatchery bred and wild
fry cultured in ponds did not show very significant difference in growth rate(Table
12).
There are two culture systems employed in pond culture of seabass:
(a) Monoculture
Monoculture is that type of culture where a single species of animal is produced, e.g.
seabass. This culture system has a disadvantage. It is entirely dependent on
supplementary feeding. The use of supplementary feed reduces profit to the minimal,
especially where the supply of fresh fish is limited and high priced.
Table shows the Combination of feed stuff.
Ingredient Percentage
Trash fish 70%
Rice bran or broken rice 30%
Table shows the Combination of moist diet
Ingredient Percentage
Fish meal 35%

Rice bran 20%
Soy bean meal 15%

Corn meal 10%
Leaf meal 3%
Squid Oil (or fish oil) 7%
Starch 8%
Vitamin mix 2%
Table shows Comparison of growth rate of seabass (Lates

calcarifer) culture in pond between wild fry and hatchery bred fry at
stocking density of 3/m2.
Wild Hatchery bred
B.L. B.W. B.L. B.W.
Stocking 10.5 cm 40.44 g 5.2 cm 5g
1st month 13.0 88.9 7.6 12.0
2nd month 16.4 204.2 10.6 26.02
3rd month 20.9 276.3 15.2 118.1
4th month 23.4 326.5 19.5 220.9
5th month 24.1 385.2 21.8 280.6
6th month 28.2 453.5 23.2 349.6
(b) Polyculture
This type of culture approach shows great promise in reducing if not totally
eliminating the farmers' dependence on trash fish as food source. The method is
achieved by simply incorporating a species of forage fish with the main species in the
pond. The choince of forage fish will depend on its ability to reproduce continuously
in quantity sufficient to sustain the growth of seabass throughout the culture period.
The forage fish must be such a species that could make use of natural food produced in
the pond and does not compete with the main species in terms of feeding habit such as
Oreochromis mossambicus, Oreochromis niloticus, etc.
4. C riteria in the selection of site for seabass culture
4.1 Water supply
The site should have enough good water quality supply all year round. Water quality
includes all physico-chemical and microbiological characteristics of water being used
for culture of seabass. The following are the parameters normally considered as
suitable water supply:
Parameter Range
pH 7.5–8.5
Dissolved 4–9 ppm

oxygen
Salinity 10–30 ppt
Temperature 26–32°C
NH3 less than 1 ppm
H2S less than 0.3 ppm
Turbidity less than 10 ppm
4.2 Tidal fluctuation
Area best suited for seabass should have moderate tide fluctuation range between 2–3
meters. With this tidal characteristic even for ponds as deep as 1.5 meters, complete
drainage during low tide can be done. In addition, the pond can readily admit water
during spring tide.
4.3 Topography
It is advantageous if the selected site is mapped topographically. This would reduce

development and operational costs such as for water pumping.
4.4 Soil
Ideally, the soil at the proposed site should have enough clay content to ensure that the
pond can hold water. Area with acid sulphate soil should be avoided.
4.5 Accessibility
Accessibility is an important consideration in site selection for logical reasons.

Overhead cost and delay in the transport of material and product may be minimized
with good site accessibility.
Other factors in the selection of site that should be considered include availability of
seed, labour, technical assistance, market demand and suitable social condition.
5. P ond design and construction
Seabass ponds are generally rectangular in shape with size ranging from 2000 m2 to 2
hectares and depth of 1.2 to 1.5 meters. Each pond has separate inlet and outlet gate to
facilitate water exchange. The pond bottom is entirely flat levelling toward the
drainage gate (Fig. 23).
6. P ond preparation
Preparation of grow-out ponds is similar to the procedure followed in pond system. In

monoculture, the fish are stocked immediately after neutralizing the pond soil with
lime. Ponds are filled immediately after pond preparation.
In polyculture, after the pond soil is neutralized, organic fertilizer (chicken manure) is
applied at the rate of 1 ton per hectare. Then water depth is gradually increased for
propagation of natural food. When abundance of natural food are observed, selected
tilapia broodstocks are released to the pond at the rate of 5,000–10,000 per hectare.
Sex ratio of male to female is 1:3. The tilapia are reared in pond for 1 to 2 months or
until tilapia fry appear in sufficient number. Seabass juveniles are then stocked.
Seabass juveniles (8–10 cm in size) from nursery are stocked in the grow-out pond at
the rate of 10,000–20,000 per hectare in monoculture and 3,000–5,000 per hectare in
polyculture system. Prior to stocking, juveniles are acclimatized to pond culture and
salinity conditions. Stocking the fish in uniform sizes will be most ideal and should be
done at cooler times of the day.
Fig. 23 Pond lay-out for seabass culture.
7. P ond management
Due to the need of maintaining atural food in ponds, water lyculture system
replenishment in p
should be minimized. Water change should be done once in three days f r about 50% of
capacity.
However, in monoculture where supplemental feed is given daily, there are chances
that excess feed may pollute the water. Hence, daily water replenishment is necessary.
8. F eeds and feeding
Supplementary feed is not required in the polyculture system, but in monoculture,

daily feeding is a normal practice. The method of supplying feed in ponds follows
often the practice employed in cage culture.
Conclusion
Seabass (Lates calcarifer) culture enterprise is one of the most dynamic and potentially
profitable segments of the brackish and marine water fish farming industry in
Southeast Asia. It is a desirable fish with good flesh texture and taste, high market
value and market value and demand. It can be reared both in freshwater and seawater
conditions. In the past 5 years, over 10,000 farmers engaged in cage culture of seabass
and over 20,000 hectares of land have been established in the Region for intensive
pond production of the species.
PRAWN/SHRIMP CULTURE
INTRODUCTION
Coastal aquaculture has been identified by the Government of India as high

potential area for increasing the fish and shell fish production and also to achieve
economic and social benefits . India with over 8,100 Km of coastline, vast
stretches of estuaries/ backwaters, lagoons provide enormous opportunities for
brackish water shrimp farming.
Commercial shrimp farming is almost three decades old in India. During the
early nineties due to proven technology in post larvae production and farming of two
varieties of shrimps viz white shrimp ( Penaeus indicus ) and tiger shrimp (Penaeus
monodon ).Large scale growth of shrimp farms and hatcheries was witnessed during a
short span of ten years. It is time for Blue Revolution to exploit the huge potential in
fisheries sector.
Shrimps are called the "Pinkish Gold" of the sea because of its universal appeal,
unique taste, high unit value realisation and increasing demand in the world market.
Scope for brackish water shrimp farming. The over exploitation of shrimp from
coastal waters and the ever increasing demand for shrimp and shrimp products in the
world market has resulted in the wide
gap between the demand and supply in the International market. This has necessitated
the need for exploring newer avenues for increasing shrimp production. Water quality
parameters required for maximum feed efficiency and maximum growth of Penaeus
monodon are given below :
Water Parameters Optimum level
Dissolved Oxygen 3.5-4 ppm
Salinity 10-25 ppt
Water Temperature 26-32 degree centigrade
pH 6.8-8.7
Total nitrite nitrogen 1.0 ppm
Total ammonia (less than) 1.0 ppm
Biological Oxygen Demand (BOD) 10 ppm
Chemical Oxygen Demand (COD) 70 ppm
Transparency 35 cm
Carbon dioxide (less than) 10 ppm
Sulphide (less than) 0.003 ppm
Penaeus monodon
S.N Traditional (within Extensive

O CRZ)
(outside CRZ)
i. Farm Size 5 ha 5 ha
ii. Culture period 5 - 6 months 5 - 6 months
iii. Stocking density 60,000/ ha 1,00,000/ ha
(PL-20)
iv Survival 70% 70%
v Expected 1.0-1.5 1.5-2.5
production tonnes/ha/crop tonnes/ha/corp
vii Price of shrimp has been taken as Rs.600/kg
Traditional aqua farming
Technical Parameters for establishing a extensive shrimp

farming Design and Construction of shrimp farm :
An extensive shrimp farm should be of the size 0.4 - 0.5 ha. and preferably drainable
The ponds generally should have concrete dikes, elevated concrete supply canal
with separate drain gates and adequate life supporting devices like generators
and aerators.
The design, elevation and orientation of the water canals must be related to the
elevation of the area with particular reference to the mean range of tidal
fluctuation.
The layout of the canals and dikes may be fitted as closely as technically
possible to existing land slopes and undulation for minimizing the cost of
construction.
SEMI-INTENSIVE FARMING
Page | 30
EARTH WORK
It is normally carried out in the following order
 Site clearing
 Top soil stripping
 Staking of centre lines and templates
 Preparation of dike foundation, excavation of drainage canals
 Construction of dikes (peripheral and secondary)
 Formation and compaction of dikes, Excavation of pits for gatesa
 Levelling of pond bottom
 Construction of gates and refilling of pits,
 Construction of dike protection
The top soil may be set aside and should again be spread later to pond bottom
preserv fertility.
THE ESSENTIAL COMPONENTS OF A SHRIMP FARM

Ponds
Water intake structure
Store room for feed and equipments
An area for cleaning of the harvest
Pump house
Watch and ward room,
Office and A mini laboratory.
POND PREPARATION
Proper pond preparation will ensure higher productivity and production levels.
The main objectives of pond preparation are :
To eradicate weed fishes and other harmful organisms
To remove abnoxious gases
To improve the natural productivity of the pond eco system
To maintain high water quality for proper growth and higher survival percentage.
Eradication of unwanted organisms is usually carried out by draining out the
entire water and drying the pond bottom till it cracks
This also helps in removal of obnoxious gases and oxygenation of the pond bottom.
It also improves the fertility of the soil.
Liming is done for correcting the pH and to kill pathogenic bacteria and virus.
In undrainable ponds mahual oil should be applied @ 200 ppm to eradicate the
weed fishes.
After around two weeks organic and inorganic fertilisers are applied to enrich
the soil and water.
Once the thick lab-lab is formed the water level is raised and the pond is made
ready for stocking.
ACCLIMATION
SELECTIVE STOCKING
The most suitable species for culture in India are the Indian white shrimp
Penaeus indicus and
Tiger shrimp P. monodon. The stocking density varies with the type of system
adopted and the species selected for the culture. Shrimp farming with a production
range of 1.5 to 2.5 tonnes/ha/crop with stocking density upto 1,00,000/ha/crop viz; 10
Nos./m2 may be allowed. In order to have uniform growth it is always advisable to go
in for hatchery reared and PCR tested seeds.
Food and feeding Shrimp diets may be supplementary or complete. In a extensive
system the shrimps need a complete diet. Although natural food items have good
conversion values, it is difficult to procure in large quantities and maintain a
continuous supply. At present most of the aquaculture farms depend on imported feed
with a FCR of 1:1.5 - 1.8. The feeding could be done by using automatic feed
dispensers, or by broadcasting all over the pond. If feeding trays are employed in
selected pockets in the pond wastage of feed can be reduced.
HARVESTING
Complete harvesting can be carried out by draining the pond water through a
bag net and hand picking. The average culture period required is around 120
days during which time the shrimps will grow to 25-35 gm size (depending on
the species). It is possible to get two crops in a year. Harvested shrimps can be
kept between layers of crushed ice before transporting the consignment to
market.
MARKETING
Because of huge gap between supply and demand of shrimps in local as well as
international market, there may not be any problem in marketing. Shrimp can either be
sold directly by the farmers in the market or sold to exporters for processing. Shrimp
can be exported in frozen form with head on, head less, battered and breaded, or IQF
products or any other form with value addition depending on the requirement of the
buyer.
WORLD FISH MARKET AT A GLANCE
FRESHWATER PRAWN FARMING
1. Introduction
Indian aquaculture has been evolving from the level of susbsistence activity to
that of an industry. This transformation has been made possible with the
development and standardization of many new production and associated
techniques of input and output subsystems. In recent years aquaculture has
created great enthusiasm and interest among entrepreneurs especially for shrimp
farming in coastal areas. Shrimp farming is capital intensive activity and
uncontrolled mushrooming growth of it has led to outbreak of diseases and
attributed environmental issues calling for closure of shrimp farms.
Although India has vast freshwater resources they are not fully exploited except
for carp culture in limited scale. Fresh water fish culture employing composite
fish culture technology has become popular for use in large number of tanks and
ponds in the country. To meet the raw material required by the processing units
for export demand there is urgent need to expand our production base. In addition
it is always stressed that there is a need to utilise our natural resources
productively to ensure the much needed food security.
2. Scope for Fresh Water Prawn Culture
Considering the high export potential, the giant fresh water prawn,
Macrobrachium rosenbergii, the scampi, enjoys immense potential for culture in
India. About 4 million ha. of impounded freshwater bodies in the various states
of India, offer great potential for fresh water prawn culture. Scampi can be
cultivated for export through monoculture in existing as well as new ponds or
with compatible freshwater fishes in existing ponds. It is exported to EEC
countries and USA. Since the world market for scampi is expanding with
attractive prices, there is great scope for scampi production and export.
3. Technical Parameters
The giant freshwater prawn is suitable for cultivation in tropical and subtropical
climates. It is a hardy species by virtue of its ability to adapt to various types of
fresh and brackishwater conditions. It accepts pelleted feed and has omnivorous
feeding habit. In the natural enviroment, lower reaches of rivers, tidal inlets,
where water is directly or indirectly connected with sea are their preferred habitat
specially during spawning. The breeding takes place in low saline waters which
is also needed for larval and post larval development after incubation. Breeding
of M.rosenbergii takes place in estuaries.
Though seed may be available in natural sources to a limited extent, for large
scale culture there is a need to ensure regular supply of seed. For ensuring
availability of quality seed in predictable quantity freshwater prawn hatcheries
should be encouraged, technology for which is already developed. Freshwater
prawn hatcheries are coming up in many states.
The techno-economic parameters required for establishment of prawn farm and

its successful operation are briefly described in this booklet. The parameters are
averaged out and the costs are only illustrative.
3.1. Site selection

The site selection plays an important role as the entire management aspect of the
farm ultimately depends on specific conditions of the site. The aspects to be
considered are topography of the area, soil type, availability of quality water etc..
The area should be free from pollution and flooding. Other considerations like
approach roads etc. have also to be taken into account.
3.2 Soil quality
The ideal soil for Macrobrachium culture should be clay silt mixture or sandy
loam comprising of 60% sand and 40% silt with good water retention capacity.
3.3. Water quality
There should be availability of abundant and good quality water.The water

should be free from any kind of pollution. The pH should be maintained at 7 to
8.5. The temperature should range from 18 0 to 340C with an optimum range of
270 C to 310 C. Dissolved oxygen content should be higher than 75% saturation.
3.4 Pond construction
Rectangular ponds are suitable mainly from the harvesting point of view. A
convenient width is 30-50 m, whereas length of the pond depends on site,
topography and farm layout. Normally a size of 0.5 to 1.5 ha is found suitable.
The average depth of the ponds should be 0.9m with a minimum of 0.75m and a
maximum of 1.2m. Dike and pond slope may be kept at 2:1. Bund must have a
freeboard of at least 60 cm above the highest water level in the pond. Designing
and layout of the farms may be done keeping in view the water intake and water
outlet facilities. The drainage system should be designed carefully to prevent
mixing of outlet water with incoming water.
3.5. Water supply and drainage
Appropriate water supply and drainage systems have to be designed keeping in

view the water source and topography of the area. Tubewell and pumping system
may be considered if required for water intake/exchange. Water exchange on
weekly or fortnightly basis as required is desirable and provisions are to be made
accordingly.
4. Farm Management
The type of pond preparation to be adopted before stocking is based on the type
of culture and its intensity and nature of the culture pond. Liming of the pond
assumes great importance here than in the case of freshwater fish culture. The
application of fertilisers is restricted in case pelletised feed is used. However,
occasionally cow dung, single super phosphate, urea etc. can be applied on
assessing the productivity.
The stocking density normally varies from 4000 to 50000 nos. of post larvae per
ha depending on the type and intensity of the management practices. The culture
system may be monoculture or polyculture with carps. In case of polyculture with
carps the more pond depth is preferred at 4-5 feet. In case of polyculture the
stocking density of prawn may vary from 2500-20000 post larvae. The carp
fingerlings may be of the order of 5000 - 2500 Nos. Nursery may be incorporated
where the post larvae obtained from hatcheries could be reared for a period of 4-5
weeks till they attain 40-50 mm or 1-3 gram.
In order to get desired production, feeding, aeration, water exchange, periodic

monitoring should be continued. The quality and type of feed is based on culture
system. Macrobrachium with its omnivorous feeding habits can make use of a
variety of feeds from common wet feed made from rice bran and oil cake to
scientifically formulated pelleted feed. The rate of feeding is determined by the
stage of growth of prawn, water quality, density of stock and other manuring
practices. Generally the feeding rate my be 5% of the body weight.
The duration of culture varies from 6 to 12 months depending on the type of

culture practice. Generally in monoculture the culture period may be 6-8 months
under monoculture and 8-12 months under polyculture. The average growth of
prawn may range from 50 gms to 200 gms depending on the duration, density,
water quality, feeding etc. The survival rate may range 50% to 70% depending on
the type of management practices.
5. Extension services
The borrower should have experience in prawn farming and should be conversant
with production technology, trade etc. Fish Farmers Development Agencies
(FFDA) have been established in almost all districts for providing necessary
training. The offices of Marine

Products Export Development Authority (MPEDA) in most of the coastal states
also provide necessary assistance.
6. Marketing
There is good demand for fresh water prawn in both local and international
markets, as such there may not be any problem in marketing the same. Fresh
water prawns can be sold directly by the farmers either in the market or to
exporters for processing before export.
7. Financial outlay
Details for the financial outlay have been indicated in Annexure I. It can be seen
therefrom that the capital cost for a 1 ha. unit has been estimated as Rs. 2.075
lakh while the operational cost for one crop works out to Rs.1.214 lakh. The
items and cost indicated under the model are indicative and not exhaustive. While
preparing projects for financial assistance the costs have to be assessed taking
into account actual field conditions.
8. Margin money and bank loan
The entrepreneur is expected to bring margin money out of his own resources.
The rates of margin money stipulated are 5% for smaller farmer, 10% for
medium farmer and 15% for other farmers. For corporate borrowers the margin
stipulated is 25%. NABARD could consider providing margin money loan
assistance in deserving cases.
9. Rate of Refinance
NABARD provides refinance assistance for freshwater prawn farming to

commercial banks, cooperative banks and Regional Rural Banks. The rate of
refinance is fixed by NABARD from time to time.
10. Financial viability
The following assumptions have been made for working out the financial
viability of the project.
i) Farm size 1 ha.

ii) Culture period 6-8 months
iii) Stocking density 30,000 /ha
iv) Survival 60%
v) Feed conversion ratio 2.5:1
vi) Expected production 1260 kg/ha/crop
vii Only one crop of 6-8 months culture period has been considered
)
Sale price of prawn has been taken as Rs. 170
per kg. The financial analysis has been shown in
Annexure I.
The results of analysis are:

i) NPW at 15% Discounting = Rs. 2.33 lakhs
ii) BCR at 15% Discounting =
1.37:1
iii) IRR = 77%
11. Rate of interest
Interest rate to be charged would be as indicated by bank/RBI/NABARD from

time to time.
12. Repayment period
The borrower will be able to repay the bank loan in 8 years (Annex -I) with a
grace period of one year on repayment of the principal.
13. Security
Security from the ultimate beneficiaries may be obtained as per the guidelines of
RBI issued from time to time.
Annexure - I
ESTIMATED FINANCIAL OUTLAY FOR GIANT FRESH WATER
PRAWN (MACROBRAHIUM RESENBERGII) CULTURE IN 1 HA

WATER AREA
A. Capital Cost
Units Quantu Rate Total

m (Rs.)
1 Construction of pond including Cum 7500 15 112500
digging, bund construction and
compaction and consolidation
2 Shallow tubewell and pumpset 5 HP Nos L/s 35,000
3 Pump house cum store room-AC roof L/s 20,000
4 Inlet/outlet sluices 10,000
5 Nets and other implements L/s 10,000
6 Aerator Nos 1 15,000 15,000
7 Miscellaneous including laying of pipe L/s 5,000
line etc.
Total A 207,500
B. Operational cost for one crop (6-8 months)
Unit Quantu Rate Tota

s m (Rs.) l

1 Lime Kg 300 5 1,500
2 In organic fertiliser (super phosphate) kg 75 5 375
3 Fertiliser - Organic-Cow Dung tons 2 300 600
4 Seed Nos 30,000 0.6 18,000
5 Feed-pelletted feed Kgs 3,150 20 63,000
6 Pumping and aeration charges L/s 10,000
7 Watch and Ward Manday 240 40 9,600
s
8 Miscellaneous including insurance, L/s 5000
harvesting and medicine etc.
Total B 108,075
Total Cost 315,575
Annexure -I(Contd.)
C. Production
1 Survival(%) 60%
2 Average weight at harvest (gms) 70
3 Total production (Kg) 1,260
4 Farm gate price (Rs.) 170
5 Number of Crops per annum 1
6 Income during 1st year (85% of total 1,82,070
production)
Income from 2nd year onwards 214,200
D. Financial Analysis
1 2 3 4 5 6 7
Capital cost 207,500
Recurring 108,075 108,075 108,075 108,075 108,075 108,075 108,075
cost
Total cost 315,575 108,075 108,075 108,075 108,075 108,075 108,075
Income 182,070 214,200 214,200 214,200 214,200 214,200 214,200
New benefit -133,505 106,125 106,125 106,125 106,125 106,125 106,125
NPW of cost 630,072
NPW of 863,222
benefit
NPW 233,150
BCR 1.37
IRR 77%

MUD CRAB FARMING
Mud crab farming is very popular in some Asian countries like Bangladesh, India,
Thailand, Philippine etc. Mud crab has huge demand and price in international market.
Crab is very tasty and many countries of the world import huge amount of crabs for
consumption every year. As a result, there are huge possibilities of earning foreign
currencies by exporting crabs. The main benefits of crab farming are, labor cost is very
low, production cost is comparatively lower and they grow very fast. Commercial crab
farming business is developing the lifestyle of the people of coastal areas. By proper
care and management we can earn more from crab farming business than shrimp
farming. And small scale crab farming is gaining popularity day by day. Mud crab
farming systems in coastal areas are described below.
Types of Mud Crab

Mud crab can be found on estuaries, backwaters and coastal ares. They are member of
Scylla genus. There are two species of crabs available that are suitable for commercial
production. Two species of crabs are red claw and green mud crab.
Green Mud Crab
Green mud crabs are larger in size.
A green mud crab can grow to a maximum size of 22 centimeter carapace width.
And it can weights about 2 kg.
These are free living and distinguished by the polygonal markings present on all
appendages.
Red Claw
Generally red claws are smaller in size than green mud crab.
A red claw can grow to a maximum size of 12.7 centimeter carapace width. And it
can weights about 1.2 kg.
It has a burrowing habit and there are no polygonal markings on it.
Both species are suitable for commercial crab farming business. And both have good
value and huge demand in the foreign market.

Mud Crab Farming Methods
You can raise mud crabs in two systems. Grow out farming and fattening systems. The
systems of farming in this two methods are shortly described below.
Grow Out System
In grow out farming system, young crabs are raised and grown for a certain period of 5
to 6 months till they reach marketing size and weight. This type of crab farming
system is generally pond based. The pond size depends on the production type.
Generally ponds for crab farming sized between 0.5 to 2 hectors. Proper bunds and
tidal water exchange is a must. Small sized ponds are very suitable for crab farming.
Because they are easily maintained. Make a suitable fence if the size of pond become
small. In larger sized ponds where natural conditions are prevailing, strengthening is
necessary along the outlet area. You can stock wild collected juvenile crabs that
weights around 10 to 100 grams. Depending on the size of crabs and available
facilities the duration of production may varies between 3 to 6 months. In commercial
production with supplementary feeding you can stock 1-3 crabs per square meter. You
can feed your crabs low cost fish, shrimps, small sized crabs etc. You can visit your
nearest local market and collect rotted fish and innards of birds and animals from
slaughter house. Provide the crabs 5% feed daily of their total body weight. For
example, if there are 100 kg crabs in the pond then feed 5 kg food daily. Collect some
crabs and try to determine an average weight. Regular sampling is very necessary for
monitoring the growth and general health, and to adjust the feeding rate. Keep some
pipes in the pond for shelter and the purpose of reducing mutual attacks and
cannibalism. Within 3 to 5 months they will reach marketing weight and become
suitable for selling.
Fattening System
Raising soft shelled crabs for a certain period until their exoskeleton gets hardened is
known as crab fattening system. Hard shelled crabs has four to five times more value
in the market than

soft shelled crabs. Farming crabs in this system take less time and the process is very
profitable. You can do crab fattening business in two systems that are described
below.
Fattening in Pond: Fattening can be done in any types of ponds between 0.025 to
0.2 hector size. Small tidal ponds with a depth of 1 to 1.5 meter is very suitable for
crab farming. Prepare the pond perfectly before stocking crabs in the pond. Pond
preparation can be done by draining the pond water, sun-drying and adding
sufficient quantity of lime. Make a fence around the pond for fattening purpose.
Because the crabs have a tendency to escape by making hole and digging the soil.
Reinforce the inlet areas with bamboo matting inside the bund. For stocking,
collect soft crabs from local fisherman or crab merchants. Collect the crabs in
morning. 1-2 per squire meter stocking density is ideal for crab fattening purpose.
Divide the pond into different compartments according to the size of crabs if it is
big sized. Keeping male and female crabs separated from each other will make
good results and reduce mutual attacks and cannibalism. Depending on your
location and crabs availability 8 to 12 fattening cycles can be done in a year.
Generally, crabs weight between 300 grams to 500 grams have high demand and
value in the market. Collect and sell all the crabs when they reach the marketing
weight. Always try to sell the crabs when they are in hard shelled condition. This
will ensure high profit form crab farming business.
Fattening in Pens or Cages: Crab fattening can also be done in pens, floating net
cages, bamboo cages in shallow estuarine waterways and inside large shrimp
ponds with good tidal water influx and in tanks. You can use bamboo splits,
netlon or HDPE as netting material. 3 m * 2 m *1 m (3 m long, 2 m wide and 1 m
height) is ideal cage size for crab fattening. Arrange the cages in a row so that you
can easily feed and monitor the crabs. Stocking density of 10 crabs per squire
meter in cage and 5 crabs per squire meter in pens is ideal. Maximum stocking
density can result mutual attacks and cannibalism. Fattening in cages or pens in
only used in small sale production. For commercial production fattening in ponds
is perfect and more profitable.
Between these two crab farming methods, fattening system is more profitable than
grow out system and has many advantages. Grow out crab farming system takes more
time than fattening system. But fattening system is very popular to the farmer as it take
less time and highly profitable.

Water Quality
Water quality plays an important role in the production of crabs. Change water
occasionally if possible or apply proper medicines or chemicals. See the following
chart.

Feeding
For commercial purpose, crabs need 5-8% food of their body weight. You can feed
your crabs low cost trash fish, chicken waste, animal innards collected form slaughter
house, brackish water clams etc. Don’t served all the feed at once. Instead give it twice
a day. Give major part of the total feeds during evening hours.
Marketing
After a certain period check the crabs for their hardening. In grow out crab farming
system they become suitable for marketing purpose within their 3 to 6 months of age.
And in fattening system the time depends on crab’s size. However, collect the crabs
when they reach proper weight and when their price remain high. Collect the crabs in
the early morning hours or evening hours. You can collect crabs from pond by using
scoop net or by using alluring bait. Wash the collected crabs with good brackish water
and remove all types of dirt and mud. And then carefully tie the crabs very carefully
without breaking its legs. Then try to keep those crabs in moist conditions. Keep them
away from sunlight. Because direct sunlight has a negative effect on their survival.
After that send them to the market.
Commercial crab farming business is gaining popularity day by day in many coastal
areas around the world. Because it is a very easy, profitable and takes less time. Mud
crabs have huge demand and high value in international market. So, you can earn
some extra money and make an employment opportunity by doing commercial crab
farming business.

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Lobster culture

INTRODUCTION
• Eight species of spiny lobsters, six shallow water and two deep sea
species, and two species of slipper or sand lobsters constitute the lobster fishery
of India.
• Spiny or rock lobsters have a sub-cylindrical body with long cylindrical
antenna with whip like flagellum.
• The carapace is covered with numerous spines and tubercles.
• The slipper or sand lobsters are with a dorsoventrally flattened body and
short scale like antenna without whip like flagellum.

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RESOURCES
• Lobster catch in India is around 2000-3000 tonnes per annum and most of
it is exported frozen, whole cooked or live.
• Export of whole lobsters since late 80's and live lobsters since 1993 and
the ever increasing demand for Indian lobsters have resulted in their regular and
organised exploitation.
• Maharashtra and Gujarat are the main lobster fishing states followed by
Tamil Nadu.
• While lobsters are landed as a bycatch in fish/shrimp trawls in the north-
west coast, they are caught by gillnets, traps and occasionally by trawls in the
south-east and south-west coasts
• Lobsters weighing 200 to 300g are best suited for whole cooked product
while those weighing over 300g (greens) and 500g (tiger) are in demand for live
lobster export.
• High demand for live lobsters, which is Rs.600-1500/kg depending on
size, has recently generated considerable interest in culture/fattening of spiny
lobsters.
Seed
• All commercially important species of shallow water spiny lobsters
in India have been bred in captivity, but their whole larval cycle is yet to
be completed.
• Scientists at the Central Marine Fishers Research Institute
(CMFRI) were successful in rearing lobster larvae to more than half
way stage and efforts are on to complete the larval rearing process.
• In India, at present, has to start with collection of lobster
juveniles from nature and growing them to the required size.
• As there are no size regulation in our country, about a third of our
commercial- catch are undersized juveniles.
• These juveniles can be utilized for lobster culture/fattening.
Nursery
• The nursery phase typically involves stocking the pueruli at 50-
100/m2 into submerged cages, consisting of mesh surrounding a steel
frame.
• Each cage is placed on the sea floor at 2-5 m depth and a feeding tube
from the surface to the cage provides the means to feed the baby lobsters.
• Finely chopped trash fish, crustaceans and molluscs are used as food.
• The nursery phase lasts for 3-6 months, during which the lobsters grow
to 10-30 g.
Grow-out of tropical spiny lobsters is performed in sea cages
• cages are now deployed in deep water from floating frames that are
moored to the bottom.
• Grow-out cages are typically square in cross-section 3 to 4 m along each
side and from 3 to 5 m deep.
• Individual farms vary in size from 10 to over 80 cages housed within
one inter- linked floating framework, with narrow walkways between the
cages for access.
• Each farm includes a small house for the farmer which is manned
continually to ensure security of stock and to perform routine feeding,
cleaning, harvesting and re- stocking.
• Lobsters are typically stocked for on-growing at 10-50 g each.
• These smaller lobsters may be stocked into cages with a smaller
mesh size to ensure they do not escape.
• Stocking density may be up to 30/m².
• As lobsters grow, they are periodically harvested and manually
graded to minimise the size variation within each cage.
• Larger lobsters are stocked at lower densities, typically around 5/m2 at
200 g and 2/m2 at 500 g.
• P. ornatus is usually on-grown to 1 kg which achieves the best price for
export to China.
• This typically takes 18-20 months.
• In Indonesia, where P. homarus is most commonly farmed, the
desired market size is 100-300 g, which takes ~9 months.
Fattening
• The tiger, P. ornatus is the ideal speoies due to its faster growth
rate and maximum value in live export.
• P. ornatus of 100-150g siz can be grown to 500g in about 8 months
in indoor culture systems under ideal rearing conditions.
• Since they attain maturity only at larger-size (700-800g), juveniles of
this species are more suited for farming to the target size of 500g and above.
• Fattening of larger size (300-350g to 500; 750-800g to 1000g) can be

done in shorter period of 3 to 4 months.
Growth enhancement by eyestalk ablation
• Three to seven fold growth enhancement was achieved in four species
of Indian spiny lobsters by bilateral eyestalk ablation (removal of both the
eyes).
• The tiger has been grown from 100g to 1500 gm 8 months by this technique.
• Research is on to find out whether the same result can be achieved by
inactivating the eyestalk hormones by laser or other modern techniques, rather
than by eyestalk ablation.
Factors influencing growth of lobsters

• Salinity, dissolved oxygen (DO), pH, temperature and nitrogenous
metabolic wastes, especially, ammonia, are the major water quality parameters
regulating lobster growth.
• Stocking density, provision of shelter, handling stress and intensity of
light also influence growth in captivity.
• Quality of feed plays a major role in obtaining optimum growth and body
colouration
Feed supply
• In nature, spiny lobsters feed predominantly mussels, barnacles, small
crabs, echinoderms and plychaete worms
• Farmed lobsters are traditionally fed a mixture of fish, crustaceans and
molluscs which come from the fish markets nearby.
• This so-called ‘trash fish’ can be highly nutritious if fresh and handled
appropriately.
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Harvesting techniques
• Lobsters are easily harvested from the sea cages by pulling the net cage to
the surface and retrieving the lobsters by hand.
• Lobsters ready for market are placed in styrofoam boxes and returned to
shore to processing / export facilities.
• The farmer typically sells the lobsters at this point and the wholesaler
takes on the responsibility for further handling and transport to market.
Live export of lobsters

• Live lobster export, started in 1993, touched 24 tonnes in 1994 and is on
the upward trend reaching 99 tonnes in 1996.
• Madras is the main city for live lobster export with a share of more than 90%.
• Bombay and Thiruvananthapuram are the other cities from where lobsters
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are exported live.
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Handling and processing
• Wholesalers and exporters of farmed spiny lobsters employ live holding
systems, consisting of tanks with clean seawater that usually involve
recirculation technology to maintain high water quality.
• Lobsters purchased from the farmers are held only briefly for 1 or 2 days
to maximise their quality and are generally not fed.
• They may be cooled to 10-15 ºC to slow their metabolism and improve
survivability during transport. Individual lobsters are normally wrapped in
newspaper and placed in styrofoam boxes before being air freighted to market.
Production costs
• Tropical spiny lobster farming is currently (2010) a profitable business
with moderate to high establishment and operating costs and high returns.
• In Vietnam the cost-benefit ratio is around 1.4 and average net revenue
around USD 15 000/yr per farm.
• The most significant operating cost is feed, which accounts for more than
60 per cent.
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• The cost of lobster seed is also significant (22 percent).
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• P. ornatus harvested at 1 kg are sold at about USD 45-60/kg in Vietnam.
• In Indonesia, P. homarus harvested at 100-300 g fetch USD 30-40/kg.
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EDIBLE OYSTER CULTURE
Marine animals belonging to the families Ostreidae are called oysters in common
usage. Oyster is one of the best known and most widely cultivated marine
animals.The oysters are highly esteemed sea food and considered a delicacy in
USA, Europe, Japan etc.
In India there is a growing demand for oyster meat in some parts of the country.
Until recently, oyster farming has been considered as a traditional practice
followed only in the temperate countries. The awareness about the vast
potentialities for development of oyster farming in tropics is recent.Serious efforts
are now being directed in its development under tropical conditions.
Scope for oyster farming in India

• In India pioneering attempts were made by James Hornell in 1910 in developing
Oyster culture in erstwhile Madras state. Central Marine Fisheries Research
Institute undertook scientific investigations at Tuticorin from early 70's and as a
result, complete package of the technology is now available in the country. Vast
stretches of backwaters, estuaries and bays present along Indian coast harbour
natural population of the oyster suggesting suitability of the habitat for Page
oyster
| 66
culture. Being filter feeders, the oyster converts primary production in the water
into nutritious sea food.
Candidate species
Six species of oysters namely the
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• Indian backwater oyster Crassostrea madrasensis,
• Chinese oyster, C.rivularis,
• West coast oyster, C.gryphoides,
• Indian rock oyster, Saccostrea cucullata,
• Bombay Oyster, Saxostrea cucullata, and
• Giant oyster Hyostissa hyotis are found in India.
The first four species mentioned above are of commercial value.
Of the six species of oysters. The Indian backwater oyster C. madrasensis is the
dominant species, more widely distributed, is euryhaline and inhabits backwaters,
creeks, bays and lagoons and occurs in the coastal areas of the States of Orissa,
Andhra Pradesh, Tamil Nadu, Kerala, Karnataka and Andamans. C.gryphoides is
also euryhaline and occurs along north Karnataka, Goa and Maharashtra coast.
C.rivularis is found along Gujarat and Maharashtra coast while Saccostrea
cucullatais found all along the main land coast and Andamans and Lakshadweep
islands.
BIOLOGY, TECHNICAL PARAMETERS AND FARMING PRACTICES OF Crassostrea
madrasensis
(I) Biology of C.madrasensis
The edible oyster is a sedentary animal. The soft body of the animal is encased in
two shell valves out of which the upper valve acts as a lid to open and close by
contraction and relaxation of the adductor muscle. Oysters mainly feed on organic
detritus and phytoplanktonic organisms like diatoms and nanoplanktons. They are
also capable of absorbing dissolved organic matter in the water through the surface
of gills, palps and the mantle.
Oysters are generally dioecious but hermaphrodites are not uncommon. Young oysters
of C.madrasensis, primarily function as males (60-75 per cent) and later
become females. In zero age group upto 78 mm. in length, 75 per cent are males
and in one year and above with 80 - 115.5 mm. length, females represent 72 per
cent. The peak spawning period is
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reported to be during March-April and July-September. Oysters, like other bivalve
molluscs, spend the first few weeks of their lives as small, drifting larvae.When
the larva is about one- third millimetre long, it attaches to a substrate (sets)
undergoes a change in its internal
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organs, eventually reaches sexual maturity and spawns, thus completing its life cycle.
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610
Technology of oyster culture
The technology of oyster culture consists of two important phases namely
(A) Oyster seed production/Spat collection and
(B) Grow- out.
(A) Oyster seed production/ spat collection
The seed requirement for culture of oyster is met either from natural spat collection
or through hatchery rearing. For collection of spat from natural grounds, suitable
spat collectors or cultch materials are provided at appropriate time which may be
oyster shells, coconut shells, asbestos sheets, mussel shells or other materials.
These are arranged on Nylon rope as strings and suspended from racks in the water
at suitable spots. The larval period
of C.madrasensis is 15 to 20 days and as such exposure of collectors will be ideal
just after a week or 10 days of spawning activity.
A reliable source offering sufficient quantities of spat of the desired species is
critical to successful oyster culture.Natural collection is the most important
source of spat and will continue to be so until commercial hatcheries are
establishedMass production of oyster seed is also possible in hatchery system
for which technology is available, though no commercial hatcheries are
available yet. For efficient spat collection the farmer should know the
(a) spat setting season and
(b) the sites to collect sufficient spat for stocking in the grow-out ponds.
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611
(B) Grow out Site
Selection
For selecting suitable site for farming, several factors like water depth, bottom
characteristics, protection from wave action, tidal flow and height, turbidity, water
quality including chemical parameters, predation, fouling, pollution and accessibility
are considered. Selected areas should be sheltered from strong wave action, salinity
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612
should be from 22 to 35 ppt and temperature range should be from 21 to 31 degree
Celsius.
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613
Farming methods
• Farming methods are normally grouped as
(a) bottom culture and
(b) off bottom culture.
Raft, rack, long-line and stakes are used in various off-bottom culture
practices. The bottom culture method is yet to be experimented in India.
The off bottom culture methods are advantageous over the bottom culture due to the
following reasons :
(i) The growth and meat yield is relatively

better.
(ii) It facilitates three dimensional utilization of the culture area.
(iii) Biological functions like filtration, feeding etc. become independent of tidal flow.
(iv) Silting and predatory problems are minimum.
Various off bottom culture methods are as follows.
a. Rack and string (ren) method
• It is also called ren method. This is the most common method advocated for
Indian conditions for which the oyster shell ren is used as spat collector This
method is ideal for shallow estuaries, bays and backwaters. The racks are
constructed at 1 to 1.25 m depth. Rack is a fixed structure, comprising several
wooden poles vertically driven into the substratum over which a wooden frame
is made at a height of 0.5 m, above the water level. The shell strings are
suspended from these racks. A rack covering 80 m2. area holds 90 strings and
125 racks in a ha. At the end of 7-10 months, each string may weigh 7 to
7.5 kg. and the production of oyster is estimated at 80 tons / ha. The mortality is
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614
about 45 per cent. The meat yield is about 10%.
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615
b. Rack and tray method
The nursery reared single spat (cultch-free) measuring about 25 mm are

transferred to trays of size 40 x 40 x 10 cm at a density of 150 to 200 spat / tray.
The tray is knitted with 2 mm synthetic twine of appropriate mesh size and is
suspended from the rack. Once the oyster reaches 50 mm length they are
segregated and transferred to rectangular tray of size 90 x 60 x 15 cm and these
trays are placed on the rack which occupies 25 sq.m area and holds 150-200
oysters. The average growth rate of oyster is 7 mm/ month and at the end of 12
months, the oyster attains an average length of 85 mm.
The production estimated is 120 tons/ ha/ year which when compared to string
method is higher, however the production cost is quite high.
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c. Stake culture
In this culture method, stakes with one nail on the top end and two nails on the
sides are driven into the substratum . These nails hold the shells with spat. The
stakes are placed 60 cm. apart. In this method, the nursery rearing of spat is
carried on the same stake.Initially for 2 months, the spat is covered with velon
screen till a size of 25-30 mm. is attained and in another 10 months they reach
marketable size.The production is estimated to be 20tonnes/ ha/ year.
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d. Raft culture
Raft is the most suitable farm structure in sheltered bays where the depth is 5m
and more.Wooden poles placed parallelly and tied across with coir rope to make
a rigid frame.Four empty airtight barrels of about 200 litre capacity are tied to
the underside of the raft at corners. It is moored by two anchors and a chain.
The size of the raft varies however rafts of size 6m x 5 m. are found to be quite
suitable. PVC pipes instead of wooden poles and styrofoam floats in place of
barrels may be used.However, this method has not been tried in India so far.
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e. Long line culture
In this system long ropes or cables are anchored at each end and are supported at
intervals by floats. Long lines of 50-100 m length are easy to manage. Double
long lines comprising of one line on either side of the floats are also used.
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Farm management
Farm management practices involve periodic cleaning of the oyster, oyster rearing
trays, farm structure like racks, thinning, sorting or grading and manual removal
of predators and foulers. ‘Fouling’ includes mud, ascidians, coral, sponges and
other encrusting organisms.
These agents attach themselves to trays and oysters and interfere with the feeding
and respiration of the oysters. If not attended to on time, a thick blanket of fouling
organisms and silt develops and the growth of oysters is hampered. Mortality also
increases due to the restriction of water circulation over the animals.
Harvesting
Oysters are harvested when the condition of the meat reaches high value which in
case of C. madrasensis is found to be good during March-April and August-
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September.Harvesting is done manually and oysters are transported to shore in
dinghies. After landing, the harvested
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oysters should be brushed and any fouling organisms removed.Oysters should be
depurated to ensure they are free of bacterial contamination.
Depuration should be carried out for 36 hours. Un depurated oysters are unsafe for
consumption and may cause gastroenteritis and related diseases. Reservoir water in the
depuration unit should be replaced for each run. Oysters are marketed after depuration.
Some oysters may be sold as shucked meat.A special ‘shucking’ knife should be used
to open the oysters and remove the meat. Care must be taken not to damage the oyster
meat during shucking. The meat should be weighed and then kept on ice until sale.
Training and Extension

The Central Marine Fisheries Research Institute (CMFRI), ICAR provides
technology, training and extension services to the interested farmers to take up
culture.
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CHROMOSOMAL MANIPULATION
Chromosomal set manipulation can be used to produce highly inbred fish in a

relatively short period. Individual fish with F = 100% can be produced in a single
generation, while inbred lines where all fish have F = 100% can be produced in two
generations. Chromosomal set manipulation to produce inbred fish can be done in one
of two basic ways, but regardless of the technique used, the fish that are produced
have only a single parent.
The first technique is to prevent the first mitotic division that occurs when the zygote
nucleus and zygote itself divides to become a two-celled embryo.To create inbred
fish, this technique is done with haploid zygotes. This technique is called either
“mitotic gynogenesis” or “mitotic androgenesis,” depending on the whether the
haploid set of chromosomes of the zygote comes from the mother or from the father.
The second technique is to prevent equational division (second meiotic division) of

the secondary oocyte (egg) after sperm penetration; this prevents the second polar
body from leaving the egg. This technique is called “meiotic gynogenesis”, because
chromosomal set manipulation is accomplished by disrupting a meiotic division; it
produces fish called “meiotic gynogens”, because all chromosomes in the offspring
come from the mother.
This technology requires highly skilled labour, and the methodologies have not been
perfected. At present, these breeding programmes are important for some kinds of
genetic research, but their practical use has not been quantified. Consequently, these
breeding programmes should be done only by scientists who work at agribusinesses
or research institutions that are capable of conducting sophisticated genetics
experiments.
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PEARL OYSTER FARMING
Taxonomy
• Genus: Pinctada
– Includes most of the pearls
found in fashion.
• Pinctada maxima
• Pinctada fucata
– Akoya pearls (classic)
– Pinctada margartifera
– Tahitian peals (black)
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– South Sea pearls
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Economic Importance
• Billion dollar retail industry
– Sold all over the world
• Price depends on rarity and quality
– $50 Pair of freshwater pearl earings to $100,000 strand of South Sea pearls.
Reproduction in Captivity
Thermal stimulation induces spawning.Larvae are allowed to float freely in the

water under controlled conditions until they are a few weeks old.Once the larvae
develop into baby
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UNIT II CHNOLOGY
oysters they are moved to a “nursery” area.Remain in nursery for about 1-2 years,
until they are large enough to be grafted.
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Saltwater Nucleation In Pearl Farming (Grafting)
Two basic methods of nucleation are used. Saltwater oysters are generally
nucleated using a "bead", prepared from mother-of-pearl. First, the bead is
surrounded by a small piece of mantle tissue taken from a donor oyster. The bead
and tissue are then implanted into the oyster's gonad.
The bead serves as a mold, or nucleus, around which the pearl develops. The
resulting pearl will contain the bead at its center and will tend to develop in the
same general shape as the original bead. The bead can be detected in the final pearl
by x-rays.
81
SBT 1304/MARINE UNIT II B.TECH
Growing
• Raft Culturing
– Appropriate for sheltered bays
82
SBTA7010/Marine Biotech/UNIT-II M.TECH/2019-2021/SEM-III
• Long-line culture method
Cages are hung from horizontal ropes or chains connected to floats.Oysters

are threaded at onto a small thread or rope that is hung from a raft.Good for
open ocean environments
• On-bottom culture
Can only be used in areas of granite or coral sand composition of the

sea bottom.
83
84
THE PEARL IS NOW ALLOWED TO GROW
After nucleating, the oysters are given a few weeks to recover from the surgery.
During this time, some of the oysters may reject and expel the implanted nuclei;
others may become sick or even die. Most, however, will fully recover. The oysters
are then placed in cages or nets and moved into the oyster bed, where they will be
tended as the pearls develop.Depending on the type of oyster, this process can
require anywhere from a few additional months to several more years!
85
Harvest
Akoya pearls are harvested after 8 months – 2 years. All other pearls are harvested
after 2 – 6 years. Harvesting is done in the winter months, when the pearl luster is
highest. An x-ray can be used to determine pearl size before harvest.
86
After the pearls are extracted from the oysters, they are washed, dried, and sorted
into general categories. Sometimes, the pearls are polished by tumbling in salt and
water.The pearls are then sold to jewelers, manufacturers, and pearl dealers.
87
MUSSEL CULTURE
INTRODUCTION
Mussels are bivalve molluscs and are found attached to rocks or any other hard
substratum by means of byssus thread secreted by the body. They belong to the
family MytilidaeIn India two species of marine mussels namely Perna v iridis the
Green mussel and Perna i ndica the Brown mussel forms the major part of the
fishery.
Kerala State can be called as the Mussel fishery zone of India since extensive beds
of both the green and brown mussel occur in this state which also account for the
bulk of mussel production in India. Of the two species commercially important the
green mussel P. viridis is widely distributed and found in the beds of Chilka lake,
Visakhapatnam, Kakinada, Madras, Pondichery, Cuddalore and Porto Nova on the
East coast and extensively around Quilon, Alleppey, Cochin, Calicut to Kasargod,
Manglore, Karwar, Goa, Malwan, Ratnagiri and the Gulf of Kutch on the West
coast.
P. viridis occurs from the inter tidal zone to a depth of 15 m. On the other hand , P
indica has restricted distribution and is found along the southwest coast from
Varkala near Quilon to Kanyakumari and from there to Tiruchendur along the
southeast coast. It occurs from the inter tidal zone to 10 m depth.P.viridis is widely
distributed and hence more suitable for farming.
88
Perna virisis Perna indica
89
1. Area suitable for farming
For sea farming, coastal waters beyond surf zone at 10 - 15 mt depth is normally
selected.The area should be sheltered from strong wave action. The site should
be free from any major industrial effluent and should not interfere with transport
or any other fishing activity. Clear water with good phytoplankton production
and moderate current to bring in the food and carry away waste products is
required. A salinity range of 30-35 ppt is preferred.
2. Farming Technology of Green Mussel

1. Biology
The scientific name of the green mussel is Perna v iridis. The mussel has
organ systems similar to those found in oysters with some modifications.It
has a foot as in clams though smaller in size, providing limited mobility. A
mussel can discard the byssal strands and secrete new ones for enabling it to
change position.
Phytoplanktons forms the food of the mussels, and they are filter feeders.
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0
P.viridis in the natural conditions grow to 63 mm in 6 months to 133 mm in
4 years.However , the growth in culture operations have been more than in the
natural conditions. In mussel the sexes are separate and the gonads which are
located in the body
81
1
proliferate into mantle. The male gonad is creamy white in colour while in the
female it is pink or reddish. The mussel attains first maturity at 15.5 to 28 mm size.
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91
Technology of mussel culture
A) Seed collection / Availability
The spawning season of the green mussel is between July and September
and the spats are found carpeting the inter tidal and submerged rocks.At
present they are collected manually and during the peak season an
individual would be able to collect 10-12 kg of seed in one hour. The seeds
can also be collected using spat collectors such as roof tiles, coir ropes and
nylon ropes.
Even though the hatchery technique for commercial mussel spat production
has been perfected by Central Marine Fisheries Research Institute, Cochi,
there is no commercial hatchery at present in India.As such the culture
operations have to depend on the availability of natural seed .
92
B) Farming models
Three types of farming are practiced for culture of the mussels as follows:
i. Sea Farming
ii) Estuarine farming
iii) Rope culture
i. Sea Farming
Longline culture of mussel is practised in shallow waters of 10 - 15 m

depth . This method of culture can withstand the severe monsoon
conditions in the west
93
coast. The
BIOTECHNOLOGY longline unit consist of 60 mt long horizontal HPD rope of 20-
BIOTECHNOLOGY
24 mm thickness anchored at both the ends with 150 Kg concrete blocks

and a series of 100 liters capacity barrels as floats fixed at 3 m intervals.
Vertical lines of 6 m length seeded with mussel spats are hung at a
distance of 75 cm between two floats in the main line. A longline unit of
60x60 mt can accommodate 12 horizontal ropes and 920 - 1000 vertical
ropes. The distance between two horizontal lines is 5 mt . At every 20 mt
the horizontal lines are connected using additional horizontal lines.
ii) Estuarine farming
Pole culture and stake culture are done in estuaries at a depth of 1.5 to 3 m. The spats
of 15 to 25 mm are wrapped around the poles or stakes with cotton mosquito nettings.
The spats gets attached to the poles in three or four days and by this time the cotton
netting will disintegrate.
Periodical thinning is necessary.
94
iii) Rope culture
Rope culture of mussel is widely adopted in Northern Kerala. Ropes are suspended
from rack made of casuarina and bamboo poles. The average area of rack is 400 sq
m and length of the ropes used for seeding ranges from 1-1.25 mt depending on the
depth of the water column.Poly propylene ropes wound with coir ropes are used for
seeding.
These ropes are hung down from the racks at an interval of 1 feet and nearly 500 -
550 ropes could be suspended from one rack. The seeds collected from wild are
being sold in units of one bag and one bag of seed can be used to seed 8-10 ropes.
The normal size of the seed ranges from 35-65 mm.
Seed collected has to be seeded on the same day and it is estimated that one
person can seed around 60-70 ropes in a day. The culture period in Northern
Kerala where the activity is taken up fairly on a large scale starts from November
and ends in the middle of May before the rains. Once in a fortnight the ropes are
lifted for monitoring the growth and removal of fowling organisms.
The mussel grows to 80-100 mm size with in 6 months of culture period and it is
estimated that around 2 lakhs mussels can be harvested from 400 sq mtrs.
95
4. Processing
Before removing the meat from the mussel it is necessary to carry out
depuration which is a process in which the mussels are kept for 18 hours in
clean sea water which will purify the mussels of bacterial pollution. The
mussels can be processed in different forms like frozen, canned, smoked, dried
and marinated. The mussel shell is used as a liming agent in coconut
plantations.
The mussel shell gives good quality lime which finds application in many industries.
96
Financial viability
The following assumptions have been made on the basis of the farming
practiced in Kerala for working out the financial viability of the project.
1 Unit size of rack ( Area ) 400 sq m

2 Culture period 6 months
3 Size of the seed (Spats) at the time of
35-65 mm
seeding
4 Size at harvesting 80-100 mm
5 Number of mussel that could be
harvested 400 sq m 2 lakh
from
6 Production
7 1st year 70%
5. Marketing
There is only limited demand for the mussel meat due to lack of awareness among
the consumers . However, there is scope for its export to Southeast Asian countries.
A marketing tie-up with the processing plants will be useful for marketing of the
product.
97
Marine algal culture (Seaweed culture)

• Seaweeds, which are macroscopic marine algae belong to the primitive non
flowering group - Thallophyta.
• They grow submerged and attached to hard substrata such as stones, rocks and coral
reefs along the shallow coasts, lagoons, estuaries and
• brackish water habitats of the Andaman - Nicobar and Lakshadweep islands and
• coastal areas of Tamil Nadu, Kerala, Karnataka, Maharashtra, Gujarat, Goa, Orissa
and Andhra Pradesh.
• Based on their pigmentation and other morphological characteristics they are

categorised into three major groups –
• Chlorophyceae which is popularly known as green seaweeds,
• Phaeophyceae or brown seaweeds and
• Rhodophyceae or red seaweeds.
Uses of seaweeds
• Seaweeds contain more than 60 trace elements in a concentration much higher than in
land plants.
• They also contain vitamins, proteins, essential amino acids, iodine, bromine and
antibiotics and several bioactive substances.
• They are used as human food, feed for livestock, poultry, fish and prawn and as manure
for many plantation crops.
• Agar is mainly produced from red seaweeds such as
Gracilaria edulis,
Gelidiella acerossa,
Gracilaria verrucosa and

98
• Carrageenan from
Eucheuma and
99
Hypnea.
• Alginic acid and mannitol are manufactured from brown seaweeds such as
Sargassum and
Turbinaria
These Phycocolloids are used in
• food,
• confectionery,
• pharmaceutical,
• biomedical,
• dairy,
• textile,
• paper and
• paint industries as
• gelling,
• stabilizing and
• thickening agents.
• In Japan, Malaysia, China, Philippines and Indonesia,
Green seaweeds such as
• Ulva,
• Enteromorpha,
• Caulerpa,
• Codium and
• Monostroma;
Brown seaweeds such as
91
0
• Sargassum,
• Hydroclathrus,
• Laminaria,
• Undaria and
• Macrocystis and
• Red seaweeds such as
• Porphyra,
• Gracilaria,
• Eucheuma,
• Hypnea,
• Laurencia and
Acanthophora are consumed as vegetables, in soups, salads, porridges and pickles.
• Resource assessment surveys on seaweed conducted by CMFRI, CSMCRI and NIO

indicate that the total standing crop along the Indian coastline consists of more than
1,00,000 tonnes
• wet weight per year belonging to 680 species of which 60 species are
economically important.
• They comprise 8,000 tonnes of agar-yielding seaweeds, 6,000 tonnes of

carrageenan-yielding seaweeds and 16,000 tonnes of algin yielding brown
seaweeds.
• Edible and other green seaweeds constitute a bulk of 70,000 tonnes.
Why cultivate seaweeds?
• In India there are about 50 seaweed industry units located in Ahmedabad, Baroda,
Cochin, Hyderabad, Madurai and Ramanathapuram.
• They depend only on natural seaweed beds for their raw material.
• A rough estimate indicated that 8,100 tonnes dry weight of agar and algin-
yielding seaweeds was utilized by the industry in the year 1995.
100
• As more and more new industries are coming up every year, exploitation rate exceeds
the harvestable biomass.
• The indiscriminate exploitation of these resources from the natural beds leads to
shrinking of stock.
• Hence, mariculture of seaweeds all along the Indian coast, estuaries and certain
backwaters is the only way to increase the production of phycocolloids and thereby to
make the industry commercially attractive.
Advantages of seaweed culture
a) Increases the seaweed production
b) Desirable varieties can be selected and cultivated on a large scale
c) Natural beds can be protected and conserved against over-exploitation
101
d) Exotic or oriental species of commercial seaweeds such as Eucheuma can be

introduced, acclimatised and cultivated in our waters
e) Can support seaweed industry by regular supply of raw materials of same quality and
maturity at low cost
How to culture seaweeds?
• The Central Marine Fisheries Research Institute has developed technologies for
mariculture of seaweeds especially the agar-yielding red seaweed Gracilaria edulis by
constant research since 1972.
• Calm and shallow coasts and bays and lagoons with sandy bottom are ideal sites for G.
edulis culture.
• For optimum growth of this weed a salinity of 28-35 ppt is desirable.
• G. edulis can easily be grown to harvestable size within 60 days from small bits of
vegetative fronds.
102
• This is cultivated in 5 x 2 m size net rafts made of coir ropes.
• G. edulis stock collected from natural bed are cut into small bits of approximately 5 cm
size.
• These bits of about 5 g are inserted between the twists of the rope.
• These floating net rafts are tied to wooden poles that are staked from the sea floor or tied
to floats and anchors in places where wooden stakes cannot be fixed.
• Like this about 900 net rafts can be accommodated in a hectare area.
• These rafts are submerged in 30-40 cm water column to avoid desiccation during the ebb
tide.
Besides net rafts, G. edulis can also be cultivated in long-lines made of thick 10m long coir ropes
from which small seeded ropes be suspended at regular intervals.
Seed stock for mariculture can be obtained from Rameshwaram and Kilakkarai of Tamil
103
Nadu coasts or from the lagoons of Lakshadweep islands.
Once in every fortnight cleaning the rafts is desirable to remove epiphytes and other attached
weeds.
• The harvest is made after 60 days by cutting the loosely grown fronds, leaving the
base attached to the rope.
• This forms the seed material for the second crop.
• Approximately 30 kg of seaweed per net can be harvested from 10 kg seed stock.
• In this way during the fair weather three or four crops can be cultivated in a year.
104
The harvested seaweed must be cleaned and dried well before storing. The
moisture content in G. edulis ranges from 70- 75%.
Hence the dry weed weighs one fourth of the weight of fresh seaweed.
Dried seaweeds are sold to the industry at the rate of Rs.4,000 to 5,000 per tonne. Agar is
extracted from the dry seaweed.
105
106
• Production of oyster, mussels, cuttlefish, fin-fishes, shrimps, lobsters and seaweeds

through aquaculture has increased from just 10.4 million tonnes in 1980 to 22.6
million tonnes in 1990.
• This hike in production is attributed mainly due to 87.2% increase in seaweed.
107
• China achieved a record production of 2,75,000 tonnes dry weight of Laminaria in 1990
from just 62 tonnes in 1952.
• Today Japan stands first in the production of Nori or Porphyra, China for
Laminaria, South Korea for Undaria edulis and the Philippines for Eucheuma.
• India can take up Gracilaria culture and become the largest producer as she is
endowed with 8,041 km long coastline and 51.2 km^ of continental shelf area in the
form of sheltered bays and lagoons.
• Venturing into mariculture of G. edulis along the Kerala coast with the public
participation will be a highly profitable and spare time avocation.
108
109
109

UNIT: III
1
2
LIVE FEED CULTURE
INTRODUCTION
 Fishes, prawns and other cultivated aquatic animals at the time of their first
feeding are quite fragile and delicate creature.
 It is the most critical phase of their life when they
need right type of nourishment for their survival and growth.
 Lack of suitable live feed organisms is a major deterrent in the rearing of
marine prawn larvae.
 Live feed organisms play a vital role-in the artificial propagation of shrimp
larvae.
 Live feed provides: Wide spectrum of composition of food.
 Autodigestion characteristics; Facilitate better nutrient assmilation.
 It is also called living capsules of nutrition.
IMPORTANT LIVE FEED

 Microscopic algae
 Infusoria
 Rotifers
 Artemia
 Cladocerans
 Tubifex
 Chironomid larvae
 Ostracods
 copepoda
LIVE FEED USED INHATCHERY
 microsopic algae: Isochrysis

 Chaetoceros Skeletonema Platymonas
 Artemia
 Rotifers
ALGAE
 Micro algae form the first link in the food chain.
 Algae are chlorophyll bearing unicelluleror multicellular plants.
3
 Besides chlorophyll, they also show various carotenoid pigments which

impart different colour to algae.
 According to nature of photosyntheic pigments, algae are further classified
 into three division: Rhodophyta
 Chlorophyta Phaeophyta
 Use of micro-algae as a possible source of protein food was recognised by
the
 researcher in 20th century.
 In recent years, mass culture of unicellular algae such as diatoms and small
phytoplankton is becoming quite popular for feeding larvae of shrimps and
prawns in aquahatcheries.
IMPORTANCE OF MICRO-ALGAE IN AQUAHATCHERIES:

 Owes to its its nutritional value.
 Small in size ranging from 5 to 25 microns.
 It stimulates enzymatic synthesis and on set of feeding in young once.
 Now a days, micro-algae is used as an essential food source for rearing all
stage of shrimps, bivalves, gastropodes and larvae of fishes.
 It is also consitute an important source of food for live food organisms
(rotifers, brine shrimp etc.) used in aquahatcheries.
ISOCHRYSIS GALBANA
 Isochrysis is a small golden brown flagellates.
 Present of Haptonema, a filliform appendage situated between the flagella.
 Haptonema may be coiled and uncoiled, short and flexible, reduced to a few
crotubules inside the cell, or absent.
 Chloroplast one or two, each with pyrenoid that is immersed or bulging.
CULTURE MEDIA
Soilwater medium: Soilwater medium is made using the basic formula that is
garden soil 1 teaspoon and glass-distilled water 200ml.
4
Procedure for Mass culture
Collection, Identification & Isolation
Test tube culture
250 ml,500 ml,l litre conical flask culture
3 or 4 litre Hafkin culture flask for stock culture
5 litre conical flask for inoculation 10 litre Pearl-pet jars for inoculation
100 litre polythene bags 200 litre cylindrical FRP tanks
1-2 tonne FRP tanks outdoor 5-10 tonnes FRP tanks outdoor
culture
Harvest
5
PROCEDURE OF MICRO ALGAE CULTURE: VARIOUS STAGES
6
ARTEMIA SALINA
 Artemia is the most widely used live food organism in aquahatcheries becase
of its ready availability in the form of dry cysts containing dorment embryo.
 Common names: Brine shrimp, brine worm and sea monkey.
 It is a highly adaptable organism capable of living at high temperatures, high
salinity, and very low dissolve oxygen.
 Artemia cysts measure about 200 micron in diameter and are brown in
colour.
 Adult Artemia measures about 1.0-2.0 cm in length;
 In nature Artemia chiefly feeds on algae.
7
Artemia cysts are hatched into nauplii following the

standard technique involving the following steps:
1. Hydration of cysts:
• A container containing 20ml of water for every 1gm of cysts.
• Provided vigorous aeration.
• After one hour, cysts get hydrated and turn spherical;
• The hydrated cysts are filtered on 100 micron mesh bolting silk cloth.
2.Decapsulation of cysts
 Hydrated cysts are kept in 5% NaOCl solution @ 15ml for every 1gm cyst.
 To prevent from the heat, containers kept in ice,
stirring required continuously.
 Cyste change the colour from dark brown to white due to chlorine.
 Filter decapsulated cysts on 100 micron cloth;
 Decapsulated cysts washed properly and give dip in
0.1% sodium thiosulphate solution to remove residual chlorine, if
any.
3. Hatching and decapsulated cysts
 Artemia cysts are hatched in cylindroconical jar
 Cyst stocking 0.5 g to 1 g for per liter
 Provide vigorous aeration;
 Cysts hatch into nauplii in about 18-24 hours.
8
 Water quality for hatching.



Harvesting of Artemia nauplii
 Harvest freshly hatched nauplii by their photostatic nature.

 Stop the aeration jar and chose with a lid
 Illuminate the transparent portion of jar.
 Collect the concentrated nauplii by opening out let valvu or through sishian
on micron cloth;
 Wash harvested nauplii thoroughly and stock in a container.
ROTIFERS
 Rotifers are commonly called as wheel animalcules.

 Among the rotifers Branchionus spp. Become more popular as live food
because of its high nutritive value, small size, word wide distribution, fast
multiplication and easy adaptability to captive culture.
 It is used as prime live food for the early stage of fish and invertebrates in
aqua hatcheries
 B. Plicatilis is fastidious filter feeder, feed on particle size less than 5
micron in size.
 B. Plicatilis undergo two types of reproduction depending upon the culture
condition.
9
In favorable condition: Parthenogenesis

In unfavorable condition: Sexual reproduction.
Stock culture Preparation
Collection of B. plicatilis from brackish water bodies
Examine the sample on the microscope and pickup B. plicatilis
Inoculate B. plicatilis in 10ml capacity test tube
Feed the B. plicatilis with yeast 200ppm or chlorella.
Gradually increase the volume from 50 to 100ml capacity breakers The above
culture is use as inoculum for mass.
MASS CULTURE TECHNIQUE
Preparation of slurry
Tanks are thoroughly cleaned & filled with 10 - 15ppt saline water Aeration
system is arranged properlly
10
Tank is fertilized with slurry for 3 - 4 days regularly
Chlorella is inoculated on the first day of fertilization
B. plicatilis is inoculated on 6th day of fertilization After inoculation fertilization

will reduce
B. plicatilis feed chlorella, bacteria and decomposed organic matter After 4-5 days
B. plicatilis is harvested with a scoop net.
SCREENING AND NEW METABOLITES FROM MARINE

MICROORGANISMS
MARINE MICRO ORGANISMS For centuries, higher plants are major

sources of drug used in many civilizations since ancient times, although the
nature of the compounds in the drug is not exactly known. After the
discovery of penicillin, attention has been focused on searching from
terrestrial microorganism to look for new sources of drug and many new
families of antibiotics are found from these microorganism. Marine microbes
having immense genetic and biochemical diversity look likely to become a
rich source of novel effective drugs. Marine bacteria constitute
~ 10% of the living biomass carbon of the biosphere32 and they represent
dramatically different environment than their terrestrial counterpart. These
bacteria originate mainly in sediments but also occur in open oceans and
associated with the marine organisms. It was surprising to find that many
bioactive compounds, reported from marine invertebrates are produced by
their microbial symbionts. Competition among microbes for space and
nutrients in the marine environment is a driving force behind the production
11
of such precious antibiotics and other useful pharmaceuticals. Interestingly

microorganisms associated with marine invertebrates are proved valuable
candidates for drug discovery program33-35 Like bacteria, marine fungi are
also reported to be potential source of bioactive substances. Sorbicilactone-
A, novel type alkaloids was reported from sponge (Ircinia fasciculata)
associated fungus, Penicillium chrysogenum. This compound showed
therapeutic human trials. Polyketide synthases (PKSs) are a class of enzymes
that are involved in the biosynthesis of secondary metabolites such as
Erythromycin, Rapamycin, Tetracycline, Lovastatin and Resveratrol.
Polyketide biosynthetic genes from bacteria and fungi have been cloned,
sequenced and expressed in heterologous hosts. Some marine sponge
12
associated bacteria with antimicrobial assets are also detected to have polyketide
synthases gene cluster and investigation is underway to explore them. Deep-sea
hydrothermal vent microorganisms are also reported to produce unusual bioactive
metabolites. Symbionts Sponges are filter feeders, not completely sealed off from
the surrounding medium. This may facilitate the formation of various types of
associations with other organisms; some of these associations with other
organisms; some of these associations may be more permanent than others. They
can be intracellular as well as extracellular although fitness effects and the
permanence of these relationships remain largely unknown.27 The presence of
large amounts of micro-organisms within the mesophyl of many demosponges is
well documented. Bacteria are probably permanently associated with the host
sponge unless they are disturbed by external stress factors. Several recent studies
have sought to address the phylogenetic diversity of microbial communication
associated with marine sponges by using 16 sRNA gene sequence analysis. A
comprehensive analysis showed that sponges from different oceans contain
phylogenetically complex, yet highly specific, microbial signatures. In particular,
representatives of the poorly characterized phyla chloroflexi, Acidobacteria and
Actinobacteria are abundant in gene libraries.36 Micro-organisms associated with
marine invertebrates are reported to be involved in the production of bioactive
molecules. Bioactive compound production in these bacteria could be attributed to
the competition among them for space and nutrition. Though these bioactive
compounds may be important for epibiotic defense of marine invertebrate hosts,
they also have significant medical and industrial applications.35,37 Marine
sponges and the microbes using within them are important from both an ecological
viewpoint sponges are important members of shallow and deep water reef
communication with nutrition supplied by photosynthetic symbionts often allowing
them to compete with other benthic organisms such as corals. In some cases the
13
active metabolites are produced by the microbes, rather than the sponge itself.
Sponges and their associated microorganisms are therefore receiving much
attention from pharmaceutical companies.38 Convincing evidence for the
involvement of micro organisms in natural product synthesis has been complied for
the tropical sponges Dysidea habacea and Theonella swinhoei, in which the
producing microbe is a cynobacterium in the former and a bacterium in the
latter.39 Sponge’s harbor a rich diversity of micro organism in their tissues and in
some case constitute up to 40% of the biomass, e.g. the Mediterranean sponge
Aplysina aerophoba.40,41 Sponge associated bacteria are capable of producing
antibacterial metabolites. Surface associated bacteria with sponge Ircinia ramosa
has shown Antibacterial activity.14 Several bacteria activated from tunicate have
yielded natural products. An example is andrimid and the moramides A-C from a
Pseudomonas flurescens strain, Harman previously known from tunicates and was
shown also to be synthesized by a tunicate – associated Enterococeus faecium. The
antifouling agent six bromoindole – 3 – baldehyole and its debromo derivative
were isolated from the ascidian Stomozoa murrayi and also from an Actinobacter
Sp. associated with this animal .42 The epibiotic bacteria in seaweed play a
protective role by releasing secondary metabolites into the surrounding seawater
that help preventing extensive fouling of the surface. Epibiotic bacteria are
therefore attracting attention as a source of new natural products.43 The proportion
of active bacteria associated with marine invertebrates (20%) and seaweeds (11%)
is higher than that isolated from seawater (7%) and sediment (5%) .
---------------------------------------------------------------------------------------------------------
------------
PRODUCTION OF MARINE MICROALGAE
14
Introduction
The early life stages of seabass and gilthead seabream are zooplankton-feeders, i.e.
they prey on small free living planktonic animals. As no artificial larval diet can at
present totally fulfil their nutritional requirements, their successful rearing still
depends on an adequate supply of high quality live feeds, usually in the form of
rotifers (fed on unicellular algae) and brine shrimp (Artemia spp).
Mass culture of microalgae
Mass production of phytoplankton for rotifers and “green water” in most

Mediterranean hatcheries is limited to a few species such as: Chlorella sp,
Isochrysis galbana, Pavlova lutheri, Nannochloropsis oculata and N. gaditana,
Dunaliella tertiolecta and Tetraselmis suecica. These species have been selected
on the basis of their size, nutritional value, culture easiness and absence of negative
side effects, such as toxicity. Their nutritional value shows a great variability not
only among different species, but also in genetically different populations of the
same species (strains). For hatchery purposes, the species to be cultured should
both fit well the local rearing conditions and have a high nutritional value for
rotifers. The increasing availability of nutritional boosters as enrichment diets for
both rotifers and brine shrimps, has made this choice easier.
15
Fig. 23.01 Mass culture of microalge (photo STM Aquatrade)
Population dynamics
Microalgae population dynamics can be described by different phases:
 the lag-phase, where, just after the inoculum, the cells increase in size, but
not in number, and begin to absorb the nutriens supplied with the culture
medium;
 the log-phase (or esponential phase), where cells reproduce very fast and
population growth is exponential;
 the transitional phase (or declining growth phase), where growth rate slows
down;
 the stationary phase, where cells remains constant in number and
reproduction is balanced by death;
 the decline phase, where cell number decreases since death rate exceeds growth.
It is advisable to harvest phytoplanktonic organisms during their log phase, since

in the new culture they will grow more rapidly and will yield a more viable
population.
Mass production systems
For aquaculture purposes, microalgae are mass produced in three main ways: (i)
batch (or discontinuous or multistep back-up system) culture, (ii) semi-continuous
culture, and (iii) continuous culture.
16
In the batch culture a small axenic stock culture produces a series of cultures of
increasing volume where the algal population of each culture vessel is entirely
harvested at or near its peak density, i.e. while still conserving a good growth
potential, to be used either as inoculum for other culture vessels, or to feed rotifers
or be used in fish larval tanks. It typically makes use of small (few liters) to
medium size (500 liters) containers, and it is kept indoor and under strictly
controlled, if not properly axenic, conditions. It is considered by many authors the
easiest and most reliable method of algal production, provided that the working
protocol is strictly enforced.
17
Algal quality is less erratic than in the semi-continuous method, even if the latter is
more productive for any given volume.
In the semi-continuous system the algal population, when mature, is partially

harvested at intervals. The harvested culture volume is replaced by fresh medium
to keep growth going on. This culture is adopted to produce large amounts of algae
and frequently uses large outdoor tanks. Their main drawbacks are: (i) the
unpredictable duration, (ii) the risk of contamination by other organisms as
competitors (other microalgal species), contaminants (bacteria) and predators
(ciliate protozoa feeding on the algae), as well as (iii) the building up of
metabolites, which can affect quality.
The continuous system is a steady-state continuous flow culture in which the rate
of growth is governed by the rate of supply of the limiting factor. It is a balanced
axenic system where the algal population is harvested and fertilised continuously.
This method, though the most efficient over extended periods, produces limited
amounts of high quality cells and requires complex equipment as well as advanced
management. A relatively recent development of this system is represented by the
photo-bioreactor, a continuous culture device that increases the density of cultured
microalgae to very high levels under predictable environmental and
microbiological conditions.
The microalgae produced can be concentrated to a dense liquid suspension by

centrifugation, and can then be stored for more than one month in the refrigerator,
still giving excellent viability when used. A new industry is now appearing, whose
concentrated algal products can also fulfil the hatchery needs, saving the time-
consuming and expensive production of microalgae in the hatchery.
The system described below is the batch culture, by far the most widely adopted
method by Mediterranean hatcheries. Before its description, additional instructions
are given concerning facilities, the preparation of the culture medium, and the
equipment required.
18
Fig. Old fashioned unit using artificial light for algae mass culture (photo M.
Caggiano)
19
Mass culture facilities for microalgae
Algae are cultured in a dedicated sector of the live feeds production section, which
is made of three working areas inside the hatchery building: a lab for duplicating
small cultures, a conditioned room to maintain small culture vessels and pure
strains and finally a large area for the mass cultures in PE bags or, less frequently,
tanks. In the warmest Mediterranean areas, a light greenhouse can replace the
latter.
Small volume cultures are kept in vessels ranging from 20-ml test tubes up to 18 l
carboys. They can be made of borosilicate glass, polycarbonate, PET or any other
material able to stand a sterilization process. These vessels are placed on glass
shelves lightened by fluorescent tubes and equipped with a CO 2 enriched air
distribution system.
Hot-extruded tubular PE film is utilised for larger volumes bags. The film is
usually 0.25 mm thick and its stretched width ranges from 45 to 95 cm. Two bag
designs are widely adopted in Mediterranean hatcheries: the smaller suspended bag
and the larger one placed within a steel wire cylindrical frame. The first type has a
capacity of 60 I (single) to 150 I (double or U- shaped), whereas the latter, that
stands on a saddle-like GRP base to improve circulation, can contain up to 450l.
Their top is closed by a plastic cover to prevent contamination.
20
Fig 24.00 A typical scheme of a batch type production
All units are equipped with artificial lights, usually fluorescent tubes, an aeration
system, often with an additional source of carbon dioxide, and stands for the
culture vessels, i.e. light shelves for small volumes and metal racks or wired
frames for PE bags.
The unit also stores the special equipment to process pre-treated seawater, such as
fine filters and sterilizers, as well as a laboratory where nutrients and glassware are
prepared and stored, and
21
where the necessary monitoring operations are performed. Standard cleaning

procedures have to be strictly followed to maintain proper hygienic conditions
-----------------------------------------------------------------------------------------------------------
-------
BIOFUEL (Biodiesel) production from marine microalgae Chlorella marina &

Nannochloropsis salina
Mechanical energy cannot be achieved successfully without petroleum, natural gas,

coal, hydro electricity and nuclear energy; and they became the basic natural
sources for the energy. The demand of petroleum and its by-products are
increasing continuously due to the increase in population and industrialization. The
discriminate use of petroleum sourced fuels is now widely recognized as
unsustainable because it is non-renewable resources. In the last 10 years, many
studies have been conducted on biofuels for substituting fossil fuels and reduce the
greenhouse gas (GHG) emission which is responsible for global warming
(Bastianoni et al., 2008). Biodiesel production from microalgae is an emerging
technology considered by many as a very promising source of energy, mainly
because of its reduced competition for land. Among these, especially, microalgae
were found to be an alternative nature source of renewable petroleum resources
that is capable of meeting the global demand for fuels (Chisti, 2007, 2008). The
idea of using algae as a source of fuel is not new (Chisti, 1981; Nagle and Lemke,
1990; Sawayama et al., 1995), but it is now being taken seriously because of the
increasing price of petroleum and more significantly, the emerging concern about
global warm that is associated with burning fossil fuels (Gavrilescu and Chisti,
2005). It is reported that microalgae can provide several different types of
renewable biofuels which include, methane, biodiesel and biohydrogen (Gavrilescu
and Chisti, 2005; Kapdan and Kargi, 2006; Spolaore et al., 2006). Microalgae have
22
short life cycle and use a photosynthetic process similar to higher plants for their
energy. In fact, the biomass doubling time for microalgae during exponential
growth is found as short as 3.5 h. Microalgae are veritable miniature biochemical
factories, and appear photosynthetically more efficient than terrestrial plant, and
are efficient CO2 fixer (Pirt, 1986). The ability of algae to fix CO2 has been
proposed as a method of removing CO2 from fuel gases from power plants, and
thus, can be used to reduce emission of GHG (Chisti, 2007). Many algae are
exceedingly rich in oil, which can be converted to biodiesel. The oil content of
some microalgae exceeds 80% of dry weight (DW) of algae biomass (Banerjee et
al., 2002; Chisti, 2007). Microalgae are faster in growth in the marine
environment and yield of oil from algae is estimated between 5000 to 20000 m 3 /
4046 m 2 /yr which is 7 to 31 times greater than the terrestrial crop, palm oil (635
m 3 ) (Pringsheim, 1950). The high growth rate of microalgae makes it possible to
satisfy the massive demand on biofuels using limited land resources. Microalgae
cultivation consumes less water than land crops. Most microalgae biomass contains
three main components such as 1) lipids, 2) proteins, and 3) carbohydrates and/or
hydrocarbons. Microalgae produce and store lipids in the form of fatty acids,
phospholipids, glycolipids and it can be used as feedstocks for biodiesel production
by transesterification reaction in the presence of acid or base with methanol.
Compared with terrestrial crops which take a season to grow and only
contain a maximum of about 5% DW of oilmicroalgae, grow quickly and contain
high oil content. This is why microalgae are the focus in the algae-tobiofuel arena.
Oil content of microalgae is usually between 20 and 50%, while some strains can
reach as high as 80%. Hence, the present study was made on culture of two
different microalgae, growth, flocculation activities, oil content and identification
by using ASTM standards. The results obtained from this investigation revealed
23
that N. salina and C. marina were easy to cultivate which contains high lipid
content. The faster growth rate as well as higher oil content found with these
microalgae will make these as the potential candidate for alternative biodiesel
production.
MARINE ENZYMES
Marine enzyme biotechnology can offer novel biocatalysts with properties like
high salt tolerance, hyperthermostability, barophilicity, cold adaptivity, and ease in
largescale cultivation. This review deals with the research and development work
done on the occurrence, molecular biology, and bioprocessing of marine enzymes
during the last decade. Exotic locations have been accessed for the search of novel
enzymes. Scientists have isolated proteases and carbohydrases from deep sea
hydrothermal vents. Cold active metabolic enzymes from psychrophilic marine
microorganisms have received considerable research attention. Marine symbiont
microorganisms growing in association with animals and plants were shown to
produce enzymes of commercial interest. Microorganisms isolated from sediment
and seawater have been the most widely studied, proteases, carbohydrases, and
peroxidases being noteworthy. Enzymes from marine
24
SBTA7010/Marine Biotech/UNIT:III M.Tech/2019-2021/SEM:III
animals and plants were primarily studied for their metabolic roles, though
proteases and peroxidases have found industrial applications. Novel techniques in
molecular biology applied to assess the diversity of chitinases, nitrate, nitrite,
ammonia-metabolizing, and pollutant-degrading enzymes are discussed. Genes
encoding chitinases, proteases, and carbohydrases from microbial and animal
sources have been cloned and characterized. Research on the bioprocessing of
marine-derived enzymes, however, has been scanty, fo cusing mainly on the
application of solid- state fermentation to the production of enzymes from
microbial sources.
In the past decade, of the plentiful reports on enzymes from novel and exotic
sources few have reached the stage of commercial production. The problemlies in
providing the enzyme producers with the proper environmental conditions of their
ecological niches. Sustained production of the bioactive molecules by
novelmolecular methods of gene cloning and expression and innovative bioreactor
designs like the so-called “niche-mimic” bioreactors [206] should play apivotal
role.Marine enzymebiotechnologywillbe the focusof the industry in the
future.Withmutual respect for each other’s commercial interests and intellectual
property rights, the biodiverse but resource-poor developing world and the wealthy
but bioresource-scarce developed world should join hands to unravel the secrets of
this unopened research treasure chest—the world’s oceans.
***********************************************************************
*******
MARINE LIPIDS/FATTY ACIDS

Omega-3 fatty acids — also called ω-3 fatty acids or n-3 fatty acids[1] — are
polyunsaturated fatty acids (PUFAs) with a double bond (C=C) at the third carbon
atom from the end of the carbon chain. [2] The fatty acids have two ends, the
25
carboxylic acid (-COOH) end, which is considered the beginning of the chain, thus
"alpha", and the methyl (-CH3) end, which is considered the "tail" of the chain,
thus "omega". The way in which a fatty acid is named is determined by the
location of the first double bond, counted from the methyl end, that is, the omega
(ω-) or the n- end.
The three types of omega-3 fatty acids involved in human physiology are α-
linolenic acid (ALA) (found in plant oils), eicosapentaenoic acid (EPA), and
docosahexaenoic acid (DHA) (both commonly found in marine oils). Marine
algae and phytoplankton are primary sources of omega-3 fatty acids. Common
sources of plant oils containing the omega-3 ALA fatty acid include walnut,
edible seeds, clary sage seed oil, algal oil,flaxseed oil, Sacha Inchi oil,
Echium oil, and hemp oil, while sources of animal omega-3 EPA and DHA fatty
acids include fish oils, egg oil, squid oils, and krill oil. Dietary supplementation
with omega-3 fattyacids does not appear to affect the risk of death, cancer or heart
disease.[3][4]Furthermore, fish oil supplement studies have failed to support claims
of preventing heart attacks or strokes.[5][6][7]
Omega-3 fatty acids are important for normal metabolism. [8] Mammals are unable
to synthesize omega-3 fatty acids, but can obtain the shorter-chain omega-3 fatty
acid ALA (18 carbons and 3 double bonds) through diet and use it to form the
more important long-chain omega-3 fatty acids, EPA (20 carbons and 5 double
bonds) and then from EPA, the most crucial, DHA (22 carbons and 6 double
bonds).[8] The ability to make the longer-chain omega-3 fatty acids from ALA may
be impaired in aging. [9][10] In foods exposed to air, unsaturated fatty acids are
vulnerable tooxidation and rancidity.[11]
Health effects
Supplementation does not appear to be associated with a lower risk of all-cause
mortality.[3]
Cancer
The evidence linking the consumption of fish to the risk of cancer is poor. [12]
Supplementation with omega-3 fatty acids does not appear to affect this either. [4]
A 2006 review concluded that there was no link between omega-3 fatty acids
consumption and cancer.[4] This is similar to the findings of a review of studies up
to February 2002 that failed to find clear effects of long and shorter chain omega-3
26
fats on total risk of death, combined cardiovascular events and cancer. [13][14] In
those with advanced cancer andcachexia, omega-3 fatty acids supplements may be
of benefit, improving appetite, weight, and quality of life. [15] There is tentative
evidence that marine omega-3 polyunsaturated fatty acids reduce the risk of breast
cancer but this is not conclusive.[16][17]
The effect of consumption on prostate cancer is not conclusive. [17] There is a
decreased risk with higher blood levels of DPA, but an increased risk of more
aggressive prostate cancer with higher blood levels of combined EPA and DHA
(found in fatty fish oil).[18]
Cardiovascular disease
Evidence, in the population generally, does not support a beneficial role for
omega-3 fatty acid supplementation in preventing
cardiovascular disease (including myocardial infarction and sudden cardiac
[3][19][20]
death) or stroke. However, omega-3 fatty acid supplementation greater than
one gram daily for at least a year may be protective against cardiac death, sudden
death, and myocardial infarction in people who have a history of cardiovascular
disease.[21] No protective effect against the development of stroke or all-cause
mortality was seen in this population.[21] Eating a diet high in fish that contain long
chain omega-3 fatty acids does appear to decrease the risk of stroke. [22] Fish oil
supplementation has not been shown to benefit revascularization or abnormal
heart rhythms and has no effect on heart failure hospital admission rates. [23]
Furthermore, fish oil supplement studies have failed to support claims of
preventing heart attacks or strokes.[5][6][7]
Evidence suggests that omega-3 fatty acids modestly lower blood pressure (systolic
and diastolic) in people with hypertension and in people with normal blood
pressure.[24] Some
27
SBTA 7010/Marine Biotech/UNIT:III M.Tech/2019-2021/SEM:III
evidence suggests that people with certain circulatory problems, such as varicose
veins, may benefit from the consumption of EPA and DHA, which may stimulate
blood circulation and increase the breakdown of fibrin, a protein involved in
blood clotting and scar formation.[25][26] Omega-3 fatty acids reduce blood
triglyceride levels but do not significantly change the level of LDL cholesterol or
HDL cholesterol in the blood.[27][28] ALA does not confer the cardiovascular health
benefits of EPA and DHAs.[29]
The effect of omega-3 polyunsaturated fatty acids on stroke is unclear, with a
possible benefit in women.[30]
Inflammation
Some research suggests that the anti-inflammatory activity of long-chain omega-3
fatty acids may translate into clinical effects.[31] A 2013 systematic review found
tentative evidence of benefit.[32] Consumption of omega-3 fatty acids from marine
sources lowers markers of inflammation in the blood such as C-reactive protein,
interleukin 6, and TNF alpha. [33]
For rheumatoid arthritis (RA), one systematic review found consistent, but modest,
evidence for the effect of marine n-3 PUFAs on symptoms such as "joint swelling
and pain, duration of morning stiffness, global assessments of pain and disease
activity" as well as the use of non- steroidal anti-inflammatory drugs.[34] The
American College of Rheumatology (ACR) has stated that there may be modest
benefit from the use of fish oils, but that it may take months for effects to be seen,
and cautions for possible gastrointestinal side effects and the possibility of the
supplements containing mercury or vitamin A at toxic levels. Due to the lack of
regulations for safety and efficacy, the ACR does not recommend herbal
supplements and feels there is an overall lack of "sound scientific evidence" for
their use.[35] The National Center for Complementary and Integrative Health has
concluded that "[n]o dietary supplement has shown clear benefits for RA", but that
there is preliminary evidence that fish oil may be beneficial, and called for further
study.[36]
Developmental disabilities
Although not supported by current scientific evidence as a primary treatment for
ADHD, autism, and other developmental disabilities, [37][38] omega-3 fatty acid
supplements are being given to children with these conditions. [37]
One meta-analysis concluded that omega-3 fatty acid supplementation
1
demonstrated a modest effect for improving ADHD symptoms. [39] A Cochrane

review of PUFA (not necessarily omega-
3) supplementation found "there is little evidence that PUFA supplementation
provides any benefit for the symptoms of ADHD in children and
adolescents",[40]while a different review found "insufficient evidence to draw any
conclusion about the use of PUFAs for children with specific learning
disorders".[41] Another review concluded that the evidence is inconclusive for the
use of omega-3 fatty acids in behavior and non-neurodegenerative neuropsychiatric
disorders such ADHD and depression.[42]
Fish oil has only a small benefit on the risk of early birth. [43][44] A 2015 meta-
analysis of the effect of omega-3 supplementation during pregnancy did not
demonstrate a decrease in the rate
2
of preterm birth or improve outcomes in women with singleton pregnancies with

no prior preterm births.[45] A systematic review and meta-analysis published the
same year reached the opposite conclusion, specifically, that omega-3 fatty acids
were effective in "preventing early and any preterm delivery".[46]
Mental health
There is some evidence that omega-3 fatty acids are related to mental health, [47]
including that they may tentatively be useful as an add-on for the treatment of
depression associated with bipolar disorder. [48] Significant benefits due to EPA
supplementation were only seen, however, when treating depressive symptoms and
not manic symptoms suggesting a link between omega-3 and depressive
[48]
mood. There is also preliminary evidence that EPA supplementation is
helpful in cases of depression. [49] The link between omega-3 and depression has
been attributed to the fact that many of the products of the omega-3 synthesis
pathway play key roles in regulating inflammation such asprostaglandin E3 which
have been linked to depression.[50] This link to inflammation regulation has been
supported in both in vitro [51] and in vivo studies as well as in meta-analysis
studies.[32] The exact mechanism in which omega-3 acts upon the inflammatory
system is still controversial as it was commonly believed to have anti-
inflammatory effects.[52]
There is, however, significant difficulty in interpreting the literature due to
participant recall and systematic differences in diets. [53] There is also controversy
as to the efficacy of omega-3 with many meta-analysis papers finding
heterogeneity among results which can be explained mostly by publication
bias.[54][55] A significant correlation between shorter treatment trials was associated
with increased omega-3 efficacy for treating depressed symptoms further
implicating bias in publication. [55]
There is some evidence to support the claim that omega-3 can help treat anxiety
disorder symptoms as well but studies have been limited. [56]
Very low quality evidence finds that omega-3 fatty acids might prevent psychosis.[57]
Cognitive aging
Epidemiological studies are inconclusive about an effect of omega-3 fatty acids on
the mechanisms of Alzheimer's disease. [58] There is preliminary evidence of effect
on mildcognitive problems, but none supporting an effect in healthy people or
those with dementia.[59][60][61]
3
Atopic diseases
Results of studies investigating the role of LCPUFA supplementation and
LCPUFA status in the prevention and therapy of atopic diseases (allergic
rhinoconjunctivitis, atopic dermatitis and allergic asthma) are controversial;
therefore, at the present stage of our knowledge we cannot state either that the
nutritional intake of n-3 fatty acids has a clear preventive or therapeutic role, or
that the intake of n-6 fatty acids has a promoting role in context of atopic
diseases.[62]
4
Dietary sources
Grams of omega-3 per 3oz (85g) serving[102][103]
Common name grams omega-3
Flax 11.4 [104]
Hemp 11.0
Herring, sardines 1.3–2
Mackerel:Spanish/Atlantic/Pacific 1.1–1.7
Salmon 1.1–1.9
Halibut 0.60–1.12
Tuna 0.21–1.1
Swordfish 0.97
Greenshell/lipped mussels 0.95[104]
Tilefish 0.9
Tuna (canned, light) 0.17–0.24
5
Pollock 0.45
6
Cod 0.15–0.24
Catfish 0.22–0.3
Flounder 0.48
Grouper 0.23
Mahi mahi 0.13
Orange roughy 0.028
Red snapper 0.29
Shark 0.83
King mackerel 0.36
Hoki (blue grenadier) 0.41[104]
Gemfish 0.40[104]
Blue eye cod 0.31[104]
7
Sydney rock oysters 0.30[104]
Tuna, canned 0.23[104]
Snapper 0.22[104]
Eggs, large regular 0.109[104]
Strawberry or Kiwifruit 0.10-0.20
Broccoli 0.10-0.20
Barramundi, saltwater 0.100[104]
Giant tiger prawn 0.100[104]
Lean red meat 0.031[104]
Turkey 0.030[104]
Cereals, rice, pasta, etc. 0.00[104]
Fruit 0.00[104]
8
Milk, regular 0.00[104]
Bread, regular 0.00[104]
Vegetables 0.00[104]
Daily values
In the United States, the Institute of Medicine publishes a system of Dietary
Reference Intakes, which includes Recommended Dietary Allowances (RDAs) for
individual nutrients, and Acceptable Macronutrient Distribution Ranges (AMDRs)
for certain groups of nutrients, such as fats. When there is insufficient evidence to
determine an RDA, the institute may publish an Adequate Intake (AI) instead,
which has a similar meaning, but is less certain. The AI for α- linolenic acid is 1.6
grams/day for men and 1.1 grams/day for women, while the AMDR is 0.6% to
1.2% of total energy.[105]
A growing body of literature suggests that higher intakes of α-linolenic acid
(ALA), eicosapentaenoic acid (EPA), and docosahexaenoic acid (DHA) may
afford some degree of protection against coronary disease.[citation needed] Because the
physiological potency of EPA and DHA is much greater than that of ALA, it is not
possible to estimate one AMDR for all omega-3 fatty acids. Approximately 10
percent of the AMDR can be consumed as EPA and/or DHA. [105] There was
insufficient evidence as of 2005 to set an upper tolerable limit for omega-3 fatty
acids.[105]
Heavy metal poisoning by the body's accumulation of traces of heavy
metals, in particular mercury, lead, nickel, arsenic, andcadmium, is a possible risk
from consuming fish oil supplements.[medical citation needed] Also, other contaminants
(PCBs, furans,dioxins, and PBDEs) might be found, especially in less-refined fish
oil supplements.[citation needed] However, heavy metal toxicity from consuming fish oil
9
supplements is highly unlikely, because heavy metals selectively bind with protein
in the fish flesh rather than accumulate in the oil. An independent
test in 2005 of 44 fish oils on the US market found all of the products passed safety
standards for potential contaminants.[106][unreliable source?]
The FDA has advised that adults can safely consume a total of 3 grams per day of
combined DHA and EPA, with no more than 2 g per day coming from dietary
supplements.[107]
10
Throughout their history, the Council for Responsible Nutrition and the World
Health Organization have published acceptability standards regarding
contaminants in fish oil. The most stringent current standard is the International
Fish Oils Standard.[108][non-primary source needed] Fish oils that are molecularly distilled
under vacuum typically make this highest-grade, and have measurable levels of
contaminants (measured parts per billion and parts per trillion). [citation needed]
A recent trend has been to fortify food with omega-3 fatty acid supplements.
Global food companies have launched omega-3 fatty acid fortified bread,
mayonnaise, pizza, yogurt, orange juice, children's pasta, milk, eggs, popcorn,
confections, and infant formula.[citation needed]
The American Heart Association has set up dietary recommendations for EPA and
DHA due to their cardiovascular benefits: Individuals with no history of coronary
heart disease or myocardial infarction should consume oily fish or fish oils two
times per week; those having been diagnosed with coronary heart disease after
infarction should consume 1 g EPA and DHA per day from oily fish or
supplements; those wishing to lower blood triglycerides should consume 2–4 g of
EPA and DHA per day in the form of supplements. [103][needs update]
Fish
The most widely available dietary source of EPA and DHA is oily
fish, such as salmon, herring, mackerel, anchovies, menhaden, and sardines. Oils
from these fish have a profile of around seven times as much omega-3 as omega-6.
Other oily fish, such astuna, also contain n-3 in somewhat lesser amounts.
Consumers of oily fish should be aware of the potential presence of heavy metals
and fat-soluble pollutants like PCBs and dioxins, which are known to
accumulate up the food chain. After extensive review, researchers from Harvard's
School of Public Health in the Journal of the American Medical Association
(2006) reported that the benefits of fish intake generally far outweigh the potential
risks. Although fish are a dietary source of omega-3 fatty acids, fish do not
synthesize them; they obtain them from the algae (microalgae in particular) or
plankton in their diets.[109]
11
Fish oil
Fish oil capsules

Marine and freshwater fish oil vary in content of arachidonic acid, EPA and
DHA.[110] They also differ in their effects on organ lipids. [110] Not all forms of fish
oil may be equally digestible. Of four studies that compare bioavailability of the
glyceryl ester form of fish oil vs. the ethyl ester form, two have concluded the
natural glyceryl ester form is better, and the other two
12
studies did not find a significant difference. No studies have shown the ethyl ester
form to be superior, although it is cheaper to manufacture. [111][112]
Krill
Krill oil is a source of omega-3 fatty acids.[113] The effect of krill oil, at a lower
dose of EPA + DHA (62.8%), was demonstrated to be similar to that of fish oil on
blood lipid levels and markers of inflammation in healthy humans. [114] While not
an endangered species, krill are a mainstay of the diets of many ocean-based
species including whales, causing environmental and scientific concerns about
their sustainability.[115][116][117]
Squid oil
Squid oil (also known as calamari oil) is another source of omega-3 fatty acid.[118]
The editor of health365com.au considers squid environmentally friendlier than fish
or krill oil, because it is prepared from the largely unused portions of squid
catches.[119]
---------------------------------------------------------------------------------------------------------
------------
MARINE PHARMACOLOGY: NEW ANTIBIOTICS AND MEDICINES

FROM
MARINE ORGANISMS
Pharmaceutical market is growing rapidly and continuously. But, still the demand
for new drug discovery is encouraged. The reason behind this motivation can be
the growing numbers of drug–resistant infectious disease and more and more
upcoming disorders. The terrestrial resources have been greatly explored and thus
academic and industry researchers are striving to get lead molecules from the inner
space of oceans. The marine resources are nowadays widely studied because of
numerous reasons. One of the reason is as the oceans cover more than 70% of the
world surface and among 36 known living phyla, 34 of them are found in marine
environments with more than 300000+ known species of fauna and flora. 1-3 The
rationale of searching for drugs from marine environment stem from the fact that
13
marine plants and animals have adapted to all sorts of marine environments and
these creatures are constantly under tremendous selection pressure including space
competition, predation, surface fouling and reproduction. The attention of finding
drug from sea had started from 1970s. For instance, about 300 patents on bioactive
marine natural product have been issued between 1969 and 1999. So far, more than
10,000 compounds have been isolated from marine organisms.4 Only 10% of over
25,000 plants have been investigated for biological activity. The marine
environment may contain over 80% of world’s plant and animal species. In recent
years, many bioactive compounds have been extracted from various marine
animals like tunicates, sponges, soft corals,
14
bryozoans, sea slugs and marine organisms.5 The marine environment covers a
wide thermal, pressure and nutrient ranges and it has extensive photic & non-
photic zones. This extensive variability has facilitated extensive specification at all
phylogenetic levels, from microorganism to mammals. Despite the fact that the
biodiversity in the marine environment for exceeds that of the terrestrial
environment, research into the use of marine natural products as pharmaceutical
agent is still in its infancy. This may be due to the lack of ethnomedical history and
the difficulties involved in the collection of marine organisms.6 But with the
development of new diving techniques, remote operated machines etc, it is possible
to collect marine samples and during the past decade, over 4200 novel compounds
have been isolated from shallow waters to 900-m depths of the sea.4 Several
marine organisms are sessile and soft bodied, then the question will arise; how do
these delicate looking simple sea creatures protect themselves from predators and
pathogens in the marine environment. The answer to this inquest is the defense
mechanism of the marine organism. The chemical compounds (like secondary
metabolites) which are produced or obtained from micro organism. By the marine
flora and fauna are very potent and biological active. The potency of bioactive
from marine life is mainly due to the intensive ecology pressure and from the
stronger and /or predators. Investigations in their chemical ecology have revealed
that the secondary metabolites not only play various roles in the metabolism of the
producer but also in their strategies in the given environment. The study on marine
chemical compounds produced by different organisms; showed the strategies for
their use for human benefit 7, 8, 9 To understand the link between marine chemical
warfare and human health it is crucial to study chemical ecology in the oceans.
Many sessile invertebrates such as sponges, corals and tunicates feed by filtering
seawater. Since, seawater contains high concentrations of bacteria; these organisms
produce antibiotics to defend themselves from potentially harmful microorganisms.
15
Thus the production of anti-bacterial compounds by filter feeders such as sponges

provides a possible link between chemical defense for sponges and antibiotics for
use in humans. However, why should a sponge produce anticancer drugs or why a
coral should produce a compound useful in the treatment of arthritis? In the
scenario of two encrusting sponges growing together, the sponge that will win the
race of competition for space is the one that produces the chemical most effective
at killing the rapidly dividing cells of the neighboring sponge. The ability of
chemical to kill rapidly dividing cells is the hallmark of chemotherapy. Anticancer
drugs often act by killing the rapidly dividing cells of a tumor but
16
generally do not harm ‘normal’ healthy cells. These ideas provide a connection
between marine chemical warfare and the possible application of marine natural
products in medicine. Chemical ecology of marine organisms relates very closely
to biotechnology by exploring these secondary metabolites to develop drugs to
treat various life threatening diseases. Natural products released into the water is
rapidly diluted and therefore need to be highly potent to have any effect. For this
reason, and because of the immense biological diversity in the sea as a whole
chemical entities exist in the ocean with biological activities that may be useful in
the quest of finding drugs with greater efficacy and specificity for the treatment of
many human diseases 4,10. It’s difficult to summarize the whole ocean wealth of
life in one review, thus few major organisms discussed below: SPONGES Sponges
are often studied because of their wealth of metabolites, which display biological
activity. This is related to the nutritional physiology of these filter feeding animals,
which efficiently filter bacteria from the inhalant water current. The diffusion of
antibiotic agents in the living tissues may increase the efficiency of the retention
mechanism concerned, and may also provide a defense against microbial infections
and/or be used to control symbiotic bacteria populations. Inhibition and promotion
of microbial growth by sponge extracts have been illustrated in simple experiments
with laboratory and marine cultures of bacteria and of pathogenic fungi. However,
their ecological and physiological significance remains largely unknown.11 So far
an estimated 15,000 species have been described, but the true diversity is probably
much higher. Particularly the tropical sponges are known for their colorful
appearances and their morphological plasticity, encompassing encrusting, rope,
ball and vase shapes ranging in size from a few mm to > 1m. Sponges are
diploblast metazoans that lack true tissues or organs. In spite of their simple
organization, genome sequencing has revealed genes encoding function that are
highly homologus to those of their vertebrate analogs. As sessile filter feeders, they
21
pump large volumes of water through a specialized canal system, termed the
aquiferous system. The filtration capacities of sponges are remarkably efficient,
leaving the expelled water essentially sterile. There are many bioactives isolated
and screened various pharmacological activity. Many of them proved to be good
drug molecules with significant results for preclinical and clinical studies. Some of
which are discussed below: Marine sponges belonging to the genus Ircinia are
known to be a very rich source of terpenoids, several of which have shown a wide
variety of biological activities. Since terpenoids containing a tetronic acid moiety
showed strong antibiotic activity. Eg: Variabilins, which were polyprenyl –
hydroquinones, had analgesic and anti-inflammatory properties. Among the
halogenated alkaloids, bromoalkaloids form the most widely distributed group of
natural compounds, which are predominantly found in marine eukaryotes like
sponges, are significantly rarer in prokaryotic micro plants and animals.12
Components of marine sponges are known to modulate various biological activities
and have antiinflammatory, anti fungal and anticancer effects. These in vitro
activities imply that marine products may be potential therapeutic agents.
Polyacetylenenic alcohols, including (35,145)- petrocortyre A, purified from the
marine sponge Petrosia Sp., are biologically active lipid compound having similar
structure to a long carbon chain compounds such as sphingolipids possess
cytotoxic activity against a small panel of human solid tumour cell liner by
inhibiting DNA replication.13 The high biological activity of Aplysina
cavernicola, a much studied sponge which produces aeroplysinin and aerthionin
and other dibromo and dichlorotyrosine derivatives, with some antibiotic activity
against Bacillus subtilis and Proteus vulgaris. The sponge Ircinia ramosa has also
been shown to possess antiviral, CNS stimulatory and antialgal properties.14 Red
Sea Sponges has shown hypoglycemic effect in normal mice. An ethanol extract of
Haliclona virdis showed a significant hypoglycemic effect lasting for more than 8
22
hr. after single oral doses of 200 or 500 mg /kg to normal mice.15 TUNICATES
The Urochordata, sometimes known as the Tunicata, are commonly known as "sea
squirts". 16 They are all sessile as adults. The name Tunicates arises from the
existence of the tunic.17 Typically this tunic is attached to the substrate by a small
holdfast and stands upright. It has two openings, an inhalant siphon and an
exhalent siphon. The blood of tunicates is normally clear and often contains
extremely high quantities of vanadium, a rare element normally occurring in very
small quantities in sea water. Nobody yet seems to know why it should collect this
vanadium.Tunicates are mostly hermaphroditic, meaning they are both male and
female at the same time. Generally they avoid self fertilisation by either having the
eggs and sperm chemically designed to reject each other, or by having the eggs and
sperm mature at different times. Sperm are released into the sea but the eggs are
retained within the body where they are fertilised by sperm brought in with
incoming water. The eggs are brooded within the body until they hatch.18,19
Many of them are known to be a rich source of chemically diversity secondary
metabolites with often remarkable biological activities. In many cases these
compound are simple amino acid derivatives or more complex alkaloids. They
often exhibit potent anticancer activities, so they are considered unusal cytotoxic
metabolites. Perhaps, this property has limited the antimalarial potential of the
pyridoacridones,
23
isolated from Cystodytes dellechiajei, and of bistramides, isolated from
Lissoclinum bistreatum, as they possessed very narrow therapeutic indices.20
Iejimalides obtained from a marine tunicate Eudistomacf Rigida are unique 224-
membered polyene macrolides having two methoxy groxy, four dienes units, and
an N-formyl-L-serine terminus, and exhibit potent cytotoxic activity in vitro.21
Aromatic alkaloids possessing polysulfide structures have been isolated from
ascidians of the genera Lissoclinum, Eudistoma and Polycitor. These compounds
have shown various biological activities like antifungal, antibacterial, cytotoxicity,
antimalarial activity, inhibition of protein kinase C. Three new active polysulfide
aromatic alkaloids are found namely lissoclibadins 1,2,3, together with two known
dimeric alkaloids, lissodinotoxins E and F.22 Halocidin is an antimicrobial peptide
isolated from the hemolytes of the tunicate. Among the several known synthetic
halocidin analogues, di-19HC has been previously confirmed to have the most
profound antibacterial activity against antibiotic – resistant bacteria. This peptide
has been considered to be an effective candidate for the development a new type of
antibiotic.23 SEAWEEDS The term seaweed refers to the large marine algae that
grow almost exclusively in the shallow waters at the edge of the world's oceans.
They provide home and food for many different sea animals, lend beauty to the
underwater landscape, and are directly valuable to man as a food and industrial raw
material. Seaweeds are plants because they use the sun's energy to produce
carbohydrates from carbon dioxide and water. They are simpler than the land
plants mainly because they absorb the nutrients that they require from the
surrounding water and have no need for roots or complex conducting tissues. 24
Many seaweeds have hollow, gas-filled structures called floats or pneumatocysts.
These help to keep the photosynthetic structures of the seaweed buoyant so they
are able to absorb energy from the sun. The term thallus refers to the entire plant
body of a seaweed. Seaweed draws an extraordinary wealth of mineral elements
24
from the sea which includes sodium, calcium, magnesium, potassium, chlorine,
sulfur and phosphorus; the micronutrients include iodine, iron, zinc, copper,
selenium, molybdenum, fluoride, manganese, boron, nickel and cobalt. It also
contains several vitamins like carotenes (provitamin A); vitamin C, B12 along with
higher proportion of essential fatty acids than land plants. Seaweeds provide a rich
source of structurally diverse secondary metabolites which includes terpenes,
acetogenins, alkaloids and polyphenolics, with many of these compounds being
halogenated. The functions of these secondary metabolites are defense against
herbivores, fouling organisms and pathogens; they also play a role in reproduction,
protection from UV
25
radiation and as allelopathic agents. Chemical defense mechanisms that inhibit
bioflim development are a common occurrence in seaweeds, with many secondary
metabolites produced by seaweeds having bacteriocidal or bacteriostatic properties.
Physical stress such as desiccation, UV and visible light and nutrient availability
are able to alter the secondary metabolites in seaweeds.26,27 Some of the active
algal specimens are Laminaria angustata var langissima, L.japonica, L.Japonica
var. Ochotencs, Ecklonia cava and Esienia bicyclis and the green seaweed
Monostrome nitidum. 28 The number and diversity of studies related to toxicity of
marine algae are high. The first report on toxicity research are those of Doty and
Anguilar-Santos and Aguilar-Santos and Doty, where the biological activity of the
compound caulerpicine, isolated from caulerpa species was found to be toxic to
mice. Norris and Fenical (1982) suggest that natural compound with biological
activity are unusual or unique, generally halogenated or non-hologenated
terpenoids synthesized by marine seaweeds alga to high herbivore pressure.29 The
red alga Sphaerococcus coronopifolius was shown to have antibacterial activity;
the green alga Ulva lactuca was shown to posses an anti-inflammatony compounds
and an anti-tumor compound was isolated from Portieria hornemanii, Ulva fasciata
produces a novel sphingosine derivative has been found to have antiviral activity in
vivo. A cytotoxic metabolite, Stypoldione, which inhibits microtubule
polymerization and thereby presents miotic spindle formation, has been isolated
from tropical brown alga, Stypodium zonale. P.Hornemannii is found to be a novel
source of cytotoxic penta halogenated monoterpene, halomon, which exhibited one
of the most extreme of differential cytotoxicity in the screening conducted by the
National Cancer Institute (NCI), USA. Haloman has been selected for preclinical
drug development since this compound shows toxicity to brain, renal and colon
tumor cell liner and preliminary in vivo evaluations have been encouraging. An
iodinated novel nucleoside has been isolated from Hyprea volitiae, which is a
26
potent and specific inhibitor of Adenosine Kinase.30 Crude Polysaccharide and
Proteins from Himanthalia elongate and Cedium tomentosum have shown
reduction in blood glucose after intravenous administration by 50% and 30%
respectively at 5mg /kg dose.
SECONDARY METABOLITES FROM MARINE MICROORGANISMS
Biodiscovery and bioactive compounds The marine environment is emerging as a

‘gold mine’ for novel bioactive compounds with a staggering 1011 new
compounds reported for 2009.
27
Marine-derived natural products present an enormous range of novel chemical
structures and provide an interesting and challenging blueprint for creating new
entities via synthetic chemistry. Marine invertebrates and plants, in particular,
represent an environment rich in microorganisms that produce compounds with
bioactive properties including antibacterial, antifungal, antiviral, anticancer,
antifouling and antibiofilm activities. However, only 1% of these microorganisms
can be isolated using traditional culturing techniques, which has been a major
bottleneck when mining the marine environment for novel bioactive molecules.
Antimicrobial and antifungal The emergence of multidrug resistant bacteria and

fungi, the latter including certain Aspergillus fumigatus and Candida albicans
strains, drives the continuous search for novel antibacterial and antifungal agents.
Most natural antibiotics used today originate from soil actinomycetes. However,
since the rate of discovery of novel antibiotics of terrestrial origin is declining,
other ecological niches, including the marine environment, are being exploited in
the search for new antibiotics. Classes of compounds with antibacterial and/or
antifungal activity which have been isolated from the marine environment include
peptides, sterols, terpenes, alkaloids, and polyketides. Three classes of antibiotic
resistant bacterial pathogens are emerging as major threats to public health: (i)
methicillin-resistant Staphylococcus aureus (MRSA), (ii) multidrug resistant Gram
negative bacteria, including Escherichia coli and Pseudomonas aeruginosa, and
(iii) multidrug resistant Mycobacterium tuberculosis. Numerous compounds which
could potentially combat these classes of pathogen have been isolated from the
marine environment. These include structurally novel compounds such as
marinopyrrole A and abyssomicin C with activity against MRSA, the alkaloid
cyclostellettamine F with activity against P. aeruginosa, and trichoderins, novel
aminolipopeptides with anti-mycobacterial activity. Compared with infections
caused by drug resistant bacteria, infections caused by resistant fungal pathogens
28
occur relatively infrequently. However, Candida species are a common cause of
hospitalacquired bloodstream infection and kill 40% of those patients, whereas
disseminated Aspergillus infections can kill up to 80% of affected patients.
Compounds of marine origin with activity against these fungal pathogens include
the cyclic depsipeptide kahalalide F and the alkaloid araguspongin C. 2.3.2.2
Antiviral Viral diseases, such as HIV and influenza A subtype H1N1, are a major
threat to human health. Since viruses can rapidly evolve and develop resistance to
currently used antiviral agents, discovering new antiviral drugs is of paramount
importance. Many classes of antiviral compounds have been isolated from the
marine
29
environment, including nucleosides, terpenes, cyclic depsipeptides, alkaloids,
macrolides, and polysaccharides. The first commercial antiviral drug, Ara-A, was
synthesised based on the structure of the nucleosides spongothymidine and
spongouridine which were isolated from marine sponges. Although Ara-A and
other synthetic nucleosides have been used to treat herpes simplex virus (HSV) and
HIV, few marine antiviral compounds have entered preclinical trials. Examples of
such compounds include the anti-HIV avarol, isolated from the marine sponge
Disidea avara, and Cyanovirin-N, isolated from the cyanobacterium Nostoc
ellipsosporum.
2.3.2.3 Anticancer Molecules with anticancer properties comprise the majority of
bioactive molecules derived from marine sources. However, relatively few

compounds enter preclinical and clinical trials and only a small group stems from
microbes. Although chemically synthesised, araC (cytarabine) was designed based
on the nucleosides from spongothymidine and spongouridine, originally isolated
from the marine sponge, Tethya crypta, and is in clinical use for more than 40
years. Today, Yondelis®, a potent anticancer drug developed by Pharmamar from
compounds produced by the tunicate Ecteinascidia turbinata, is probably the most
successful example of how marine natural products can lead to anticancer
treatments. 2.3.2.4 Antifouling and antibiofilm properties Biofouling, the
undesirable accumulation of microorganisms, plants, algae, and/or animals on
wetted structures, is of great concern in a wide range of applications, ranging from
food packaging/storage, water purification systems, marine and industrial
equipment, to medical devices. The two main strategies that are used to combat
biofouling are to either prevent initial attachment or to degrade fouling biofilms.
Several coatings are designed to prevent this initial attachment. However, some
applications of the antifouling coating require certain requirements/restrictions. For
example, many countries have now imposed a ban on the most effective
21
0
antifouling coating (organotins) available for marine applications, urging instead
the use of non-toxic novel biofouling compounds. In the health care sector,
antifouling coatings for medical applications require compounds that are
bactericidal and non-toxic to the human body. Marine organisms, in particular
seaweeds and marine invertebrates, have proven to be a successful source of
antifouling compounds. However, these marine compounds are difficult to obtain
in large quantities. To overcome this problem, marine microorganisms are being
explored to identify novel biofouling molecules which can be produced in larger
quantities. Although the mechanism is unknown, several fatty acids (e.g. 1-
hydroxymyristic acid, 9-Z-oleic acid and 12-methylmyristic acid)
produced by marine
21
1
microorganisms have antifouling properties. The most promising evidence came
from an experiment in which a coating consisting of 10% fatty acids prevented
attachment of micro- and macro-fouling organisms on a panel which had been
immersed in the ocean for 1.5 years. Similar results were obtained from a coating
containing synthesised alkyl butenolide, after alkylated butenolides isolated from a
deep sea Streptomyces species were found to exhibit antifouling properties.
Several other compounds show promise including pyolipic acid, phenazine-1-
carboxylic acid and 2-alkylquinol-4-ones and proteases, but their further potential
is yet to be examined. Bacteria possess a cell-to-cell communication system termed
quorum sensing. This communication system is dependent on the production of
small molecules, which when sensed in high concentrations lead to coordinated
behaviour by regulating several physiological processes including
bioluminescence, motility, antibiotic resistance, virulence factor production and
biofilm formation. Biofilms (aggregates of microorganisms where cells adhere to
each other or to a surface) are of major concern for treating bacterial infections,
since bacteria present in biofilms have increased antibiotic resistance profiles
compared to their sessile counterparts. Since quorum sensing and biofilm
formation are closely linked, it is not surprising that quorum sensing inhibitors
often also exhibit antifouling/antibiofilm properties.
Recently, extracts from several microbial isolates from a marine habitat were
shown to contain antiquorum sensing and antibiofilm activity against
Pseudomonas aeruginosa, the primary cause of morbidity and mortality among
cystic fibrosis patients. As such, quorum sensing and biofilm inhibitors could
provide novel treatment options for treating bacterial infections, and these are
urgently needed due to the emergence of multidrug resistant microorganisms.
21
2
ENDOPHYTIC FUNGI
Endophytic fungi Endophytes are microbes that colonize living, internal tissues of
plants without causing any immediate, overt negative effects (Bacon 2000). As
almost all vascular plant species appear to be inhabited by endophytic bacteria or
fungi, these represent important components of microbial diversity. The
relationship between the host plant and its endophyte shows symbiotic
characteristics as the endophytic occupant usually obtains nutritients and protection
from the host plant and in return profoundly enhances the fitness of the host by
producing certain functional metabolites (Tan and Zou 2001). Still, if the host plant
is weakened, the endophyte can also become an aggressive saprophyte and thereby
reveal the smooth transition between symbiont and opportunistic pathogen (Schulz
and Boyle 2005). Fungal endophytes are a polyphyletic group of primarily
ascomycetous fungi, whereas basidiomycetes, deuteromycetes and oomycetes are
rarely found (Saikonnen et al. 1998, Arnold 2007). Although they do not show host
specifity, certain fungal lineages appear with greater frequency in plants
representing particular families and thus denote host preference (Cannon and
Simmons 2002, Arnold 2007). Consistent with the tremendous diversity of
endophytic fungi and their ecological roles is the astounding chemical variety of
their secondary metabolites, which often display promising pharmaceutically or
agrochemically exploitable activities when tested in various bioassays (Strobel et
al. 2004). Due to the world’s urgent need for new antibiotics, chemotherapeutic
agents and agrochemicals to cope with the growing medicinal and environmental
problems facing mankind, growing interest is taken into the research on the
chemistry of endophytic fungi. Whereas between 1987 and 2000 approximately
140 new natural products were isolated from endophytic fungi (Tan and Zou
2001), a similar number was subsequently characterised in half of this time span,
i.e. between 2000 and 2006 (Zhang et al. 2006). Many of these exhibit interesting
21
3
activity profiles. Cryptocin (15), for example, is an tetramic acid isolated from the
endophytic fungus Cryptosporiopsis quercina, an endophyte of Tripterigeum
wilfordii, that possesses potent activity against the world’s worst plant pests
Pyricularia oryzae and other plant pathogenic fungi, advocating it for possible
agrochemical usage (Li et al. 2000). From the medicinal plant Erythrina crista-galli
the endophyte Phomopsis sp. was isolated, which produced the anti-inflammatoriy
as well as antifungally and antibacterially active polyketide lactone, phomol (16)
(Weber et al. 2004).
But it is not only new compounds being isolated from endophytes that are
promising. The well known plant metabolite taxol (17), the “world’s first billion-
dollar anticancer compound” (Strobel 2004), was originally isolated from the bark
of the endemic Pacific yew tree, Taxus brevifolia. It interferes with the normal
function of microtubule breakdown. Specifically, taxol binds to the β-subunit of
tubulin and thereby interrupts the dynamic rearrangement of this important
component of the cytoskeleton. This adversely affects cell function because the
shortening and lengthening of microtubules is necessary for their function as a
mechanism to transport other cellular components, e. g. during mitosis. Thus taxol
affects dividing cells, especially fast dividing ones like cancer cells. For the
treatment of one patient suffering from cancer, 2 g taxol are required, which
represents an amount equivalent to twelve trees and thereby posing a challenge to
the limited natural resources, since the isolation from the inner bark implies
21
4
the destruction of yew trees. Thus, the demand for taxol greatly exceeds the supply
that can be sustained by isolation from its natural source and alternative sources of
the drug have been sought for a long time. Although the highly functionalized,
polycyclic diterpene has been prepared by total synthesis, the process is too
complex and not economically feasible. Currently, the supply of the compound is
achieved by a successfully implied partial synthetic route based on baccatin III or
its 10-deacetyl congener, which are isolated from the needles of other Taxus
species and thus from a renewable resource. However, the extraction process of
these precursors is tedious and costly. In the ongoing search for alternative sources
of taxol, the group of Gary Strobel discovered taxol production in a hitherto
undescribed endophytic fungus associated with Taxus brevifolia, identified as
Taxomyces andreanae (Stierle et al. 1993). Although initially controversial, these
findings prompted further studies, and it is nowadays an emerging picture that the
ability to produce taxol upon fermentation seems to be a rather widespread feature
among endophytic fungi. So far, more than 10 different fungal strains from at least
6 different host plants, most of them only distantly (if at all) related to Taxus, have
been identified. However, it is worth mentioning that in all cases the resulting
yields are minuscule, so far preventing any commercial exploitation (Strobel et al.
2004). Similar to the taxol case, the endophytic fungus Entrophospora sp.
associated with Nothapodytes foetida was found to produce the cytotoxic plant
alkaloid camptothecin (18) (Puri et al. 2005). The substance which was first from
the Chinese medicinal plant Camptotheca acuminata in 1966, exhibits remarkable
described anticancer activity by inhibition of the DNA enzyme topoisomerase I.
Due to its low solubility and adverse drug reaction it is not used as an anticancer
drug itself, but served as a drug lead and precursor for the semi-synthetic
antiproliferatic drugs topotecan and irinotecan. Optimization of the fermentation
conditions of the endophytic fungus may lead to the development of an
21
5
economically and eco-friendly process for the production of camptothecin that
could overcome the ever demanding supply problem (Puri et al. 2005) Thus, the
ability to produce pharmacologically important natural products previously only
known from plant sources is occasionally also inherent to endophytic fungi, whith
further examples including podophyllotoxin (Puri et al. 2006, Kour et al. 2008)
which will undoubtedly prompt future research into endophytic fungi.
21
6
Mangrove forests represent an ecosystem of high biodiversity (Kathiresan
and Bingham 2001). It has been stated previously that biological diversity would
imply chemical diversity, because the constant evolutionary race to survive would
be most active (Strobel et al. 2004). Thus, in addition to their extraordinary
morphological and physiological adaptations, the production of bioactive
secondary metabolites might play an important role in the constant competition of
mangroves with other plants, animals and microorganisms for the limited resources
in their habitat.
In fact, the capability of mangroves to produce a wide array of bioactive
compounds is reflected in numerous publications which describe the high chemical
diversity of their metabolites, despite the fact that intensive research on mangrove
metabolites only sprung up in the last two decades (Li et al. 2008). Several
endophytic fungi have been isolated and cultured from the mangrove plants,
Rhizophora apiculata and Dendrophthoe falcate (Kumaresan et al., 2002). More
than 200 species of endophytic fungi have been isolated and identified from
mangroves and have, despite the short period of research on the chemistry of
mangrove endophytes, already been proven to be a well-established source for
structurally diverse and biologically active secondary metabolites (Li et al. 2009).
Mangrove-derived fungi so far are still poorly investigated and thus
represent a promising source of chemically new compounds with huge
pharmaceutical and agrochemical potential. Hence, the present study is to

30
investigate the production of enzymes and bioactive metabolites by endophytic
fungi derived from the mangroves of Vellar estuary, Southeast India.
*********************************************************
PROBIOTICS
Definition of Probiotics
• Better definition: a live microbial adjunct which has a beneficial effect on

the host by modifying the host-associated or ambient microbial community,
by insuring improved use of feed or by enhancing its nutrition, by
enhancing the host response towards disease, or by improving quality of the
ambient environment
• Our focus: response towards disease and improvement of the ambient

environment
• Jobs of Microbial Adjuncts:
– 1) microbial adjuncts preventing proliferation of pathogens in gut or

elsewhere;
– 2) improved digestibility;
– 3) deliver improved nutrition to aquatics;
– 4) enhancing host response to disease (acquired);
– 5) improved environmental quality.
Possible Modes of Action
competition for chemicals/available energy

30
competition for adhesion sites (exclusion)
enhancement of the immune response
improvement of water quality
interaction with phytoplankton
a source of macro- and micro-nutrients
8 enzymatic contribution to digestion
(1) production of inhibitory compounds

(2) Release of chemicals having a bactericidal or bacteriostatic effect
(3) ultimate result: competitive edge for nutrients/energy
(4) production sites: in host intestine, on its surface, or in culture medium
(5) products: antibiotics, bacteriocins, siderophores, lysozymes,
proteases, hydrogen peroxide, organic acids (pH change)
(6) exact compound is seldom identified: hence, the term “inhibitory”
(7) Lactobacillus sp. produces bacteriocins (toxins)
30
(8) marine bacteria produce bacteriolytic enzymes against V. parahaemolyticus

(9) Alteromonas sp. produces monastatin, shown to be inhibitory against
Aeromonas hydrophila
(10) inhibitory effects have been shown by probiotics against aquaculture
pathogens
(2) Competition for Chemicals or Available Energy
• Explains how different microbial populations exist in same ecosystem
• it is likely that it occurs in the mammalian gut, but proof is lacking
• application of the principles of competition to natural situations is not easy
• microbial situation in ecosystems is usually controlled by heterotrophs

competing for organic substrates as both carbon and energy sources
• if you know the factors affecting microbial composition of the

microbiota, you can manipulate it
• All microorganisms require iron for growth
• siderophore: low mw ferric ion-specific chelating agents
• dissolve precipitated Fe and make it available for microbial growth
• siderophores scavenge Fe and make it unavailable to other species
• this occurs at tissue level
• probiotics producing siderophores can outcompete pathogens for Fe,

thus limiting pathogen growth
• works best with pathogens that also produce siderophores (e.g., V. anguillarum)
(3) Competition for Adhesion Sites
• Competition for gut adhesion sites would limit colonization
• adhesion to enteric mucus is necessary for bacteria to become

31
established in fish intestines
 adhesion can be specific (based on adhesin and receptor molecules) or

non-specific (based on physiochemical factors)
32
 total probiotic effect is probably a mixture of site competition, production

of inhibitory compounds and nutrient/energy competition
(4) Enhancement of Immune Response
• Rem definition of an immunostimulant? Chemical compounds that activate

the immune systems of animals and render them more resistant to
infections by viruses, bacteria, fungi and parasites.
• Immune response varies in animals
• lactic acid bacteria administered orally may induce increased resistance to

enteric infections problem
(5) Improvement of Water Quality
• Proposed as a mode of action as a result of monitoring water quality

after addition of probiotics
• usually associated with Bacillus sp.
• Hook: gram + bacteria are better converters of organic matter back to CO2 than
gram -
• thus: phytoplankton blooms are more easily maintained (interesting research

area!)
• monitor: DOC, POC
33
Rationale for Selecting Probiotics
34
35
PREBIOTICS IN AQUACULTURE
Prebiotics are defined as non-digestible components that are metabolized by

specific health-promoting bacteria such as Lactobacillus and Bifidobacterium.
These bacteria are considered beneficial to the health and growth of the host by
decreasing the presence of intestinal pathogens and/or changing the production of
health related bacterial metabolites
The latter include for instance short-chain fatty acids (SCFA), which are generally
believed to be positive for colonic health.
Prebiotics are carbohydrates, which can be classified according to their molecular
size or degree of polymerization (number of monosaccharide units), into
monosaccharides, oligosaccharides or polysaccharides.
According to International Union of Pure and Applied Chemistry nomenclature,
oligosaccharides are defined as saccharides containing between three and ten sugar
moieties Other authorities classify saccharides with 3–19 monosaccharide units in
this group. However, there is not a rational physiological or chemical reason for
setting these definitions (Voragen 1998).
Consequently, oligosaccharides can be loosely defined as low molecular weight
carbohydrates. Based on the biochemical and physiological properties, the
carbohydrates can be classified as digestible or non-digestible.
The concept of non-digestible oligosaccharides (NDO) originates from the
observation that the anomeric C atom (C1 or C2) of the monosaccharide units of
some dietary oligosaccharides has a configuration that makes their glycosidic
bonds non-digestible to the hydrolytic activity of the human/animal digestive
enzymes.
Dietary fibres belong to the broad category of carbohydrates. Burkitt et al. (1972)
defined dietary fibre as the sum of polysaccharides and lignin that are not digested
by the endogenous digestive enzymes of the human gastrointestinal (GI) tract.
They can be classified as
water soluble (e.g. inulin and oligofructose),
insoluble (e.g. cellulose)
mixed (e.g. bran).
Fermentable carbohydrates are considered to be the most promising in terms of a
positive influence on the composition and activity of the indigenous microbiota of
the GI tract .
However, research and application of orally administered prebiotics is in its
infancy regarding fish and shellfish production compared to the progress that has
been made in the development of prebiotics for terrestrial animals
36
During the last two decades, traditional use of antibiotics in aquaculture has been
criticized because of the potential development of antibiotic-resistant bacteria, the
presence of antibiotic residues in seafood, the destruction of microbial populations
in the aquacultural environment and the suppression of the aquatic animals
immune system.
As an alternative strategy to antibiotics, probiotics have recently attracted

extensive attention in aquaculture. Many reports have been published regarding
application of probiotics in the aquatic environment.
However, because of high cost, potential impact on the environment, regulatory
issues, and food safety and challenges regarding incorporation into modern
extruded feeds, large-scale application of probiotics in the water has been limited.
Alternatively, it appears more practical to manipulate the GI tract microbiota in
aquatic animals through the use of prebiotics that alter the conditions to favour
certain bacterial species which may enhance fish growth efficiency and reduce
disease susceptibility of the host organism.
This is supported by other investigations which indicate that the GI tract is a
potential port of entry for some pathogenic bacteria.
However, it has only been during the last decade that there has been an improved
understanding of the importance of commensal intestinal microbiota in the fish
intestine.
Nevertheless, the first study on prebiotics in aquaculture, to the authors knowledge,
was reported in 1995 (Hanley et al. 1995).
The common prebiotics established in fish to date include inulin,
fructooligosaccharides (FOS), short-chain fructooligosaccharides (scFOS),
mannanoligosaccharides (MOS), galactooligosaccharides (GOS), xylooligo-
saccharides (XOS), arabinoxylooligosaccharides (AXOS),
isomaltooligosaccharides (IMO) and GroBiotic -A.
However, no information is available on transgalactooligosaccharides (TOS) used
in endothermic animals. Although these are mostly plantderived additives and
fibres are often not naturally present in fish diets, especially not for carnivorous
fish, the prebiotic potential of oligosaccharides and other dietary fibres may have
interesting applications in aquaculture to stimulate gut health and the presence of
beneficial gut bacteria as well as to suppress potentially deleterious bacteria.
In addition to the information available on prebiotic effects on the gut microbiota
in fish, articles investigating the effect of prebiotics on intestinal morphology are
available.
37
INULIN
Some of the more commonly used prebiotics in animal feeds include inulin, FOS
and TOS. Inulintype fructans are composed of b-D D-fructofuranoses attached by
b-2-1 linkages.
The first monomer of the chain is either a b-D D-glucopyranosyl or b-D D-
fructopyranosyl residue. They constitute a group of oligosaccharides derived from
sucrose that are isolated from natural vegetable sources.
Inulin is found in a variety of edible grains, fruits and vegetables such as wheat,
onions, leeks, garlic, asparagus, artichokes and bananas (Roberfroid 1993). Inulin
appears to have a beneficial effect on the gut microbiota, particularly in the colon
of endothermic animals (Havenaar et al. 1999; Possemiers et al. 2009).
Although inulin is not a natural fibre in fish diets, inulin may have interesting
applications in aquaculture to stimulate the goodgut
bacteria, suppress pathogens and enhance immune response.
the first preliminary study carried out using inulin was conducted by Wang &
Wang (1997). In this 14-day study, inulin was administered via intraperitoneal
injection into grass carp (Ctenopharyngodon idellus) (24.6 ± 3.5 g) and tilapia
(Tilapia aureus) (21.8 ± 3.5 g). Although survival rates against Aeromonas
hydrophila and Edwardsiella tarda were higher, the values were not significantly
different from that of the control fish.
Fructose oligosaccharides
One of the most common prebiotics studied in humans and terrestrial animals is
FOS, a general term that includes all NDOs composed of fructose and glucose
units.
FOS refers to short and medium chains of b-D D-fructans in which fructosyl units
are bound by b-(2-1) glycosidic linkages and attached to a terminal glucose unit.
Because of a lack of b-fructosidases, mammalian digestive systems cannot
hydrolyse the b-(2-1) glycosidic bonds.
FOS can be fermented by certain bacteria expressing this enzyme, such as
lactobacilli and bifidobacteria. Manning & Gibson 2004). Dietary inclusions of
FOS will thus selectively support the growth and survival of such bacteria in the
GI tract of animals. It is assumed that there are no specific cellular FOS receptors
in vertebrates. As such it is rather speculative to assert any immunological effects
by direct action of FOS on host cells.
Short chain Fructose oligosaccharides:
38
Supplementation of scFOS has been shown to confer benefits on nutrient

utilization, growth and disease susceptibility of various endothermic animal
species through improved GI microbiota.
From an aquaculture point of view this is important as during the last decade, there
has been an improved understanding of the importance of intestinal microbiota in
fish. However, no investigations appear to have been carried out on scFOS addition
to salmonid diets.
Mannose oligosaccharide
The effects of MOS on aquatic animals have been investigated in several recent
studies (Table 3). The mannose receptor (MR) is an endocytic receptor of
macrophages and endothelial cell subsets whose natural ligands include both
selfglycoproteins and microbial glycan’s. It is also
expressed by immature cultured dendritic cells (DC), where it mediates high
efficiency uptake of glycosylated antigens. Atlantic cod (Gadus morhua L.) have
been shown to possess receptors akin to mammalian MRs.
Furthermore, a C-type lectin possessing MR features has been found in shrimp.
Mannosecontaining ligands may also bind to other receptors such as DC-SIGN and
dectin-2 resulting in leucocyte activation. Because mannose-containing molecules
induce intracellular signalling that may increase production of proinflammatory
cytokines, MOS may possess beneficial features as feed additives to fish and
shellfish.
Gallactooligosaccharides
GOS consisting of 2–20 molecules of galactose and glucose and can be produced
through enzymatic treatments of lactose (Yang & Silva 1995), and the prebiotic
has been widely been used in endothermic animals (Sako et al. 1999; Vos et al.
2007).However,toourknowledge,onlytwostudieshavebeen carried out using GOS in
fish (Table 4). According to Burr et al. (2008), 1% GOS significantly increased
protein and organic matter ADC values, while lipid ADC values were significantly
decreased compared with red drum fed the basal
diet.Incontrasttotheseresults,Grisdale-Helland et al.(2008) reported that GOS had
no effect on digestibility in Atlantic salmon or on feed intake or growth. However,
protein concentration in the whole body and protein retention were reduced by 6%
and 9%, respectively, possibly as a result of increased nitrogenous losses in non-
faecal excretions.
Xylooligosaccharide
XOS are xylose-based oligomers and have some specific characteristics that are
driving research efforts to develop applications in fields related to the food and
39
feed industries. XOS appear naturally in bamboo shoots, fruits, vegetables, milk
and honey (Vazquez et al. 2000). Like other oligosaccharides, XOS are non-
digestible and act as prebiotics promoting the growth of beneficial bifidobacteria in
the colon of mammals (Crittenden & Playne 1996; Hsu et al. 2004). To the authors
knowledge, only one study has been carried out on fish allogynogenetic crucian
carp (Carassius auratus gibelio) (Table 4). XOS was added to fish basal
semipurified diets at three concentrations by dry feed weight: 50, 100 and 200 mg
kg)1 (Xu et al. 2009). After 45 days, survival was not affected by any diet as no
mortalities were observed. There were significantly higher (P < 0.05) relative gain
rate and daily weight gain (DWG) of fish fed the XOS-containing diets, highest in
the fish fed 100 mg XOS kg)1, compared with the control. Likewise, the protease
and amylase activities in the intestinal content and hepatopancreas generally
increased dose-dependently with maximum levels in fish fed the diet containing
100 mg XOS kg). Growth performance as well as enzymatic activity levels was
generally lower in fish fed the diet containing 200 mg compared to 100 mg XOS
kg)1. The authors speculated that the beneficial influence of XOS on growth and
the better enzyme activities might be associated to an alteration of the gut
microbiota. However, as no such information was presented, the hypothesis needed
to be tested in future studies.
Arabinoxylanoligosaccharides:
Arabinoxylans (AX) are the main non-starch polysaccharides found in many cereal
grains and are part of dietary fibre (for review see, Swennen et al. 2006; Grootaert
et al. 2007). They consist of b-(1,4)-linked D D-xylopyranosyl residues to which
arabinofuranosyl moieties are attached. They are degraded in the colon of
mammals by specific intestinal bacteria possessing AX-degrading enzymes.
Although some health effects of AX are documented the effects of their hydrolysis
products, the AXOS, are less studied (Grootaert et al. 2007; Courtin et al. 2008).
AXOS can be produced by enzymatic depolymerisation of lignocellulose such as
wheat bran (Yamada et al. 1994; Swennen et al. 2006). To date, only two studies
have been carried out on AXOS in fish.
Grobiotic A
The commercial product GroBiotic:-
A is a mixture of partially autolysed brewers yeast, dairy ingredient components
and dried fermentation products. The yeast membrane is composed of many
different polysaccharides, one of them is insoluble b-glucans. It is widely
acknowledged that yeast b-glucans as well as b-glucans from other sources may
induce immunological responses in fish (Dalmo & Bøgwald 2008). It is highly
likely that b-glucan components in barley and yeast are capable of inducing some
31
0
immune responses because of b-glucan receptors on leucocytes. The fact that there
may be b-glucan receptors which may induce intracellular signalling events
indicates that yeast and barley supplements as not prebiotics per se but rather
immunostimmulatory in their effects.
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UNIT: IV
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111
FISH GENETICS
Gynogenesis
Gynogenesis is the process of embryonic development with solely the maternal

genome and without paternal genetic input, a phenomenon similar to parthenogenesis.
Gynogenesis occurs in nature and can also be induced.
Mitotic gynogenesis
Mitotic gynogenesis can be used to create mitotic gynogens (all genes come from the
mother), fish that are 100% inbred. The technique that is used to accomplish this with
species that have the XY sex-determining system (females are XX and males are XY;
virtually all aquacultured species have this system of sex determination) is outlined in
Figure.
The first step in this breeding programme is the production of first-generation mitotic
gynogens. Ultraviolet radiation is used to destroy the DNA (the genes) in sperm. The
irradiated sperm are then used to activate eggs. An irradiated sperm cannot fertilize an
egg because its genes have been destroyed. The activation causes the egg to undergo
the equational division (second meiotic division) and to extrude the second polar
body. The egg now contains only a haploid egg nucleus; this produces a haploid
zygote (the zygote contains only a single chromosome (homologue) from each
chromosome pair, and each chromosome comes from the mother, which is why they
are called “gynogens”).
When the haploid zygote undergoes first cleavage, a pressure or temperature shock is
used to prevent the haploid zygote nucleus from dividing into two daughter nuclei.If
the shock is timed perfectly, the haploid zygote nucleus has replicated its
chromosomes so that each daughter nucleus will have a full and identical set of
chromosomes, but the haploid zygote nucleus has not divided.By preventing first
cleavage, the zygote remains a zygote, but the chromosome number of the zygote has
doubled from the haploid state to the normal diploid state, which means that each
112
chromosome occurs as a pair.
113
Since mitosis (first cleavage is a mitotic cell division) produces two identical sets of
chromosomes, each chromosome pair is composed of two identical chromosomes. Consequently,
every gene comes from the mother, and every gene is homozygous; the mitotic diploid gynogen
is 100% homozygous and 100% inbred. If first-generation mitotic gynogens are to be used in a
breeding programme to create inbred lines, a second phase of gynogenesis followed by sex
reversal is needed in order to produce the lines of 100% inbred fish, in which all fish within each
inbred line are genetically identical.
Each first-generation mitotic gynogen will be used to create a unique line of 100% homozygous
and 100% inbred fish by utilizing either of two possible types of gynogenesis. When the first-
generation mitotic gynogens mature, their eggs are stripped, and either mitotic gynogenesis is
repeated to produce second-generation gynogens or meiotic gynogenesis is used to create second
generation gynogens.
Half of the second-generation gynogens from each family are sex-reversed with anabolic
androgens (steroid hormones) to produce XX sex-reversed males. The sex-reversed males are
genetic females but phenotypic males. The fish that are not treated with hormones are raised
normally. Within each family, the sex-reversed males and their sisters are genetically identical
(genetically, they are all identical sisters); when they mate, they produce an inbred line of
genetically identical fish that is 100% female, 100% homozygous, and 100% inbred. Sex-
reversed males must be created every generation, because it is the only way males can be
produced, and it is the only way each inbred line can be perpetuated without additional
chromosomal manipulation.
114
112
Meiotic gynogenesis
Gynogenesis can be used to create another type of inbred fish-meiotic gynogens. This type of
chromosomal manipulation is easier than mitotic gynogenesis, and meiotic gynogens have a
higher survival rate than mitotic gynogens because they have less inbreeding.Meiotic
gynogenesis is less useful in producing inbred lines because it is difficult to accurately predict
the exact amount of inbreeding produced, and the inbreeding produced each generation is quite
variable.Since regular systems of inbreeding are most useful when they produce reliable and
predictable amounts of inbreeding, meiotic gynogenesis is less useful than mitotic gynogenesis
for producing inbred lines. However, one to three generations of meiotic gynogenesis can be
used to produce highly inbred fish.
11
3
114
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115
Mitotic androgenesis
Mitotic androgenesis can be used to produce mitotic androgens (all genes come from the father),
fish that are 100% inbred. The technique that is used to produce mitotic androgens for species
with the WZ sex-determining system is outlined in Figure
116
Phase 2 of this breeding programme uses a second round of mitotic androgenesis, and half the
offspring from each family are sex-reversed with anabolic estrogens to produce sex-reversed ZZ
females. These females are genetic males but phenotypic females. Within each family, the sex-
reversed females are mated to their genetically identical brothers to produce each inbred line;
fish in each inbred line are genetically identical, 100% homozygous, and 100% inbred and all are
males. As was the case with mitotic gynogens, each line is genetically unique.
****************************************************************************
Polyploidy
An increase in the level of ploidy of an individual by the addition of one or more set(s) of
chromosomes refers to polyploidy resulting usually either in triploidy or tetraploidy.Sometimes it
may also result in penta or hexaploidy.
Natural polyploidy (triploidy/tetraploidy)
Polyploidy has been observed to occur in nature in some species of fish like the common carp
(Cyprinus carpio) and trout mainly due to chromosomal translocation and when two distantly
related fish species are crossed.The crosses between grass carp and bighead carp had produced
triploid hybrids (Marian and Krasznai, 1978).However, none of the interspecific nor intergeneric
hybrid crosses among Indian carps have been reported to produce such allotriploids.
Artificial induction of polyploidy in Indian major carps
Some preliminary attempts have been made to induce artificial induction of triploidy and
tetraploidy in Indian major carps with varied degrees of success
117
118
Conclusion:
Chromosomal manipulation can be used to quickly produce highly inbred lines of fish.One
generation of mitotic gynogenesis or mitotic androgenesis will produce fish that are 100%
homozygous and 100% inbred. A second generation of chromosome set manipulation is needed
to produce 100% inbred fish that are capable of reproducing.
One generation of meiotic gynogenesis will produce fish that have large, but unknown, levels of
inbreeding; the amount of inbreeding produced by meiotic gynogenesis is variable and depends
on crossing over frequencies.The use of chromosomal manipulation to produce inbred lines
should be done only by scientists at large agribusinesses or at research stations.
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Artificial insemination
Artificial insemination (the collection of spermatozoa and ova and their mixing together in
various media that keep spermatozoa motile) is carried out in only a few species (mostly
freshwater), such as salmonids, cyprinids and acipenserids. Traditionally, fresh water (or sea
water for marine species) is used as the medium in which the male and female gametes are
mixed. However, fresh water is not a very favourable medium because hypotonic shock causes
the sperm structure to deteriorate in several minutes and the egg is activated quickly. These
problems can be avoided by using as media various saline solutions of different composition,
depending on the species (125 mM NaCl pH 9 for salmonids; 50 raM Nacl pH 8 for cyprinids).
These media prevent sperm deterioration, prolong slightly the duration of motility, and prevent
or defer the cortical reaction. These solutions also prevent the yolk of crushed eggs from
precipitating when it comes into contact with the water, limit motility and block the micropyle.
Fish farmers are beginning to use these media, so significantly increasing the fertilization rate
while reducing the number of spermatozoa used for insemination. The length of gamete survival
is an important factor to consider in carrying out artificial reproduction. Gamete survival in vivo
(after the release of sperm and oocytes from cysts and follicles) varies with the species. Sperm
fertilizing ability decreases during the spawning period in sea bass and trout but not in carp.
Ovum survival in the general or ovarian cavity is from one to several weeks in salmonids,
several hours in carp at 20°C and only 30 min in Chinese carp. In vitro survival is from one to
several weeks for sperm (under oxygen and with antibiotics added) and several hours for ova (2–
4 h in carp and 12–24 h in trout). The spermatozoa of several species of teleosts have been stored
deep frozen, but the quality of the sperm is not as good and more spermatozoa per ovum have to
be used to obtain the same percentage of fertilization as with non‐frozen sperm.
INDUCED BREEDING AND LARVAL REARING

INTRODUCTION
Walking catfish in English, or “pla duk” in Thai, is a generic name for a number of species
belonging to the family Clarridae. Five are encountered in Thailand, two of which are popular
sources of animal protein, C larias batrachus and Clarias macrocephalus, locally known as “pla
duk dan” and “pla duk oui”, respectively. C . batrachus fry is easily obtaine
from the spawning pond. Unfortunately, C . macrocephalus do not readily re roduce
themselves in captivity. However, it can be induced to breed if injected with extracts of fish
pituitary glands containing gonadotropin sex hormones.
120
Thai consumers have a preference for C. macrocephalus but, because of bottlenecks in fry
availability and slow growth, its culture is still limited in comparison to C. batrachus.
Our biologists have worked for 20 years to develop artificial breeding methods. This attempt was
first successful for Pangasius sutchi and Chinese Carps in 1965. Further studies were
continued. Up to now, induced spawning is a rutine work for our aquaculturi ts.
The purpose of this review is to summarize the induced breeding and larval rearing of C .
macrocephalus practices in Thailand.
1. Characteristics and Biology
The species is closely related to C . batrachus from which it can be distinguished by the wide occipital
process (Fig. 1). Body is elongate with head broadly depressed, four pairs of well developed barbells,
and small eyes. Dorsal and anal fins are long without spine. Pectoral fin has a pungent spine with
serrated on its inner edge. Caudal fin is not confluent with dorsal or anal fin (Fig. 2). Body color is
dark brown with purplish tint and about tent transverse rows of small white spots on the side.
Fig. 1. Occipital process of Clarias macrocephalus (left) and Clarias batrachus (right).
121
Fig. 2. C larias macrocephalus Günther
The species is distinguished by their ability to survive in a wide range of water conditions. It
requires a relatively small area for culture and can be stocked more densely than many other
species. They can live out of water for several hours or in waters of low oxygen content as they
have accessory organs that enable them to breathe atmospheric air. Its range of distribution
includes the areas from Indochina penninsular. Thailand and the Philippines.
The spawning season is between May and October. The female makes a small round hollow nest
with grassy bottom about 30 cm in diameter and 5 – 8 cm deep in shallow water. The eggs are
deposited in the nest and attached to the roots of aquatic vegetation in the nest. The male will
take charge of these eggs until they are hatched out. The egg can be hatched out within 20 hours
at temperature of 25 – 30°C. A female weighing 300 – 800
gm can produce between 5,000 – 10,000 eggs. The natural diet is wide-ran ing, it includes
worms, insects, shrimps and decayed matter.
2. Selection of Spawners
The essentials in fish induced spawning are fully ripe mature brooders both female and male.
Brood fish should be carefully tended for two to three months before induced spawning
operations are carried out. Males and females should be segregrated and stocked in separate
ponds. Selection of spawners is one of the most important stages in induced spawning
operations. It is necessary to know how to select healthy males and females in order to obtain
maximum production of fry.
Determination of ripeness is an art and requires experience. To be good brooders the firsh must be
more than one year old or 150 gm. Sex can be distinguished by the shape of the genital papilla
(Fig. 3). The male genital papilla is pointed. The female papilla is oval shape. The following
characteristics can be used as guidelines to ascertain that the female is ready for induced
spawning operations. It has a bulging abodomen. It is clastic and soft to the touch. The cloaca is
reddish and prominent, and the contour of this ovary can be seem on both sides of the abdomen.
3. Obtaining the Pituitary Gland
Pituitary gland contains hormone namely gonadotropin which stimulate the production of sex
steroids in the gonad which responsible for the maturation of gametes. Gonadotropin is
composed of follicle stimulating hormone (FSH) and luteinizing hormone (LH) which are
responsible for egg development and egg ovulation respectively.
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Pituitary gland of common carp, Chinese carp, Indian carp, and Panqasius sutchi can be used
for induced spawning. The fish from which the hyopphysis is to be collected is weighed and
placed on a shopping board. The skull is cut open with a knife (Fig. 4). After removing a
piece of the skull, fatty tissue and blood are wiped off with a cotton pad. The pituitary gland
can be seen after the mid-brain has been folded back by using forceps.
Fig. 3. Genital papillae of the male and female C larias macrocephalus
4. Amount of Pituitary Gland Solution Injected
One concentration or one dose commonly used can be expressed as follow:
The gland is ground in the homoginizer: distilled water is added and the gland is again ground.
A syringe is used to take up the solution for injection (Fig. 5). The female can be injected with
aypophysis of Chinese carp in a dosage of 1.0 for the first injection and 2.0 for the second
injection with the time interval of 6 hours. Aliquots of isotomic saline solution or distilled water
is added depending on the weight of recipient, about 0.5 ml for fish weigh less than 1.0 kg of
body weight and 1.0 kg body weight and 1.0 ml for fish weigh 1 – 3 kg.
The intramuscular injection is given in the area between the base of the dorsal fin and
lateral line (Fig. 6).
5. Artificial Insemination
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Ovulation occurs about ten hours after the second injections. The water on the female's body
should be wiped off with a towel. As the abdomen is being pressed, the stripped eggs should be
collected in a dry plastic container (Fig. 7). At the same time, the milt is made to drip on the eggs
by grinding the testis with fingers and pouring the water through the fine mesh cloth. Eggs and
sperm are mixed and stirred gently with a feather. Next, a little clean water is added and gently
mixed again. After one to two minutes, water is added two or three times to cleanse the fertilized
eggs. The fertilized eggs are transferred to the hatching hapa (Fig. 8). Most of the fertilized eggs
hatch out within 24 hours. Figure 9 shows the location of testis.
6. Fry Mursing
After yolk resorption, usually within 2 days, the larvae are transferred from hapa to the nursery
fiber glass tank. The fry develop feeding behaviour at about the same time their yolk was
absorbed. The food to be given for the first 3 weeks is live moina. Usually 3 weeks old fry with
the size of 2 – 3 cm are distributed to the fish farmers.
Fig. 4. Extraction method for removing the pituitary gland, showing transverse cut, mid-brain
and pituitary gland location.
124
Fig. 5. Preparation of the pituitary gland solution
Fig. 6. Location for intramuscular injection.
125
Fig. 7. Artificial insemination.
126
Fig. 9. Transferring fertilized eggs to incubator hapa.
127
128
Fig. 8. Location of testis with the digestive track folded up.
7. Egg Development
The stages of egg development are given in Fig. 10.
Fig. 10. Egg development of C larias macroccphalus, 70 X
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Eye stalk ablation
The process of unilateral eyestalk ablation is used in almost every marine shrimp
maturation/reproduction facility in the world, both research and commercial, to
stimulate female shrimp to develop mature ovaries and spawn. This method of
inducing females to develop mature ovaries is used for two reasons:
1. most captive conditions cause inhibitions in females which keep them from
developing mature ovaries in captivity
2. even in conditions where a given species will develop ovaries and spawn in captivity,
use of eyestalk ablation increases total egg production and increases the percentage of
females in a given population which will participate in reproduction n
m
Hormonal effects of eyest lk ablation Indirect

a
effects of eyestalk ablation Eyestalk ablation
techniques
Latency period: eyestalk ablation to ovarian development
Hormonal effects of eyestalk ablation

m
The most commonly accepted theory is that a gonad inhibitory hormone (GIH) is produced
in the neurosecretory complexes in the eyestalk. This hormone apparently occurs in nature
in the non- breeding season and is absent or present only in low levels during the breeding
n
seaso . By inference, then, the reluctance of ost penaeids to routinely develop mature
ovaries in captivity is a function m
of elevated levels of GIH, and eyestalk ablation lowers the
high hemolymph titer of GIH. The effect of eyestalk removal is n t on a single hormone
such as GIH, but rather effects numerous
o physiological processes ( Bray & La rence,
1992). w
130
Indirect effects of eyestalk
ablation
Considering that eyestalk ablation affects the hormone balance for numerous
physiological processes in addition to stimulatio of gonadal hypertrophy, what are the
practical effects of this operation, and at what cost do we achieve induced ovarian
development using eyestalk ablation?
131
The following observations have been made concerning use of eyestalk ablation in captive
reproduction, and may be related to either captive conditions, eyestalk ablation, or both:
Captive spawn size (number of eggs per spawn) is smaller than in wild-matured
females, regardless of whether eyestalk ablation is used.
 Eyestalk ablation increases total egg production in captivity by producing more
frequent spawnings, but not larger spawns.
 There is not a strong trend toward diminishing spawn size over time.
 Molt cycle duration is shorter in eyestalk-ablated females than intact females.
 Higher mortality of eyestalk ablated females is often, but not always, reported.
 Eyestalk ablation has been suggested to deteriorate female condition.
 Eyestalk ablation in some instances has been observed to produce lower hatch rate
of eggs than unablated females.
 Hatch rate has been observed to decline over time under captive conditions.
 Ovarian color in captive females, especially in eyestalk ablated females, is often
rather different than wild-matured (Bray & Lawrence, 1992).
There is strong circumstantial evidence that part of the problems seen with captive
reproduction are related to a simple inability of current diets to supply required nutrients as
rapidly as required for the gonadal hypertrophy stimulated by eyestalk ablation. In nature,
an organism would not be anticipated to develop eggs, constituting some 10% of female
body weight, unless nutrients are available for first, metabolism, second, growth, and third,
reproduction. Eyestalk ablation accelerates the production of ova, regardless of whether the
proper types and balance of nutrients are available, and regardless of whether those ova are
even capable of fertilization. Dietary factors clearly have been shown to influence
percentage hatch and percentage of females spawning (Bray & Lawrence, 1992).
Eyestalk ablation techniquesShrimp should be ablated only when hard-shelled, never when in
post-molt (newly molted or seft-shelled) or premolt stages. Because molting and reproduction,
especially in females, are both energy demanding processes, they appear to be antagonistic in
terms of biological programing.
Unilateral eyestalk ablation is accomplished in the following ways:
1) Simple pinching of the eyestalk, usually performed half to two-thirds down the eyestalk. This
method may leave an open wound.
2) Slitting one eye with a razor blade, then crushing eyestalk, with thumb and index fingernail,
beginning one-half to two-thirds down the eyestalk and moving distally until the contents of eyes
have been removed. This method, sometimes called enucleation, leaves behind the transparent
exoskeleton so that clotting of hemolymph, and closure of the wound, may occur more rapidly.
3) Cauterizing through the eyestalk with either an electrocautery device or an instrument such as
a red-hot wire or forceps. If correctly performed, this method closes the wound completely and
132
allows scar tissue to form more readily. A variation of this technique is to use scissors or sharp
blade to sever the eyestalk, and then to cauterize the wound.
4) Ligation by tying off the eyestalk tightly with surgical or other thread. This method also has
the advantage of immediate wound closure (Bray & Lawrence, 1992).
Latency period: eyestalk ablation to ovarian

development
Once females have been subjected to eyestalk ablation, complete ovarian development
often ensues within as little as 3 to 10 days, assuming the animals were removed from a
breeding or ready-to-breed population, of adequate size for reproduction, and not
subjected to too much transfer stress. If the animals have been removed from non-
conducive environmental conditions (e.g, cold, non-breeding season temperatures, or
hypersaline conditions), a longer than normal latency period between eyestalk ablation
and ovarian development can be anticipated, probably due to seasonal hormonal
cycling. Duration of the latency period between eyestalk ablation and maturation of
ovaries is determined by the readiness of the population at the time of eyestalk ablation
(Bray & Lawrence, 1992).
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Methods of eyestalk removal in Penaeids:
a) eyeball incision and squeezing;
b) ligation or tying
c) electrocautery or using a silver nitrate bar;
d) cutting;
e) pinching-crushing.
CRYOPRESERVATION
ABSTRACT
133
Cryopreservation is a long-term storage technique to preserve the biological material without
deterioration for extended period of time at least several thousands of years. The ability to
preserve and store both maternal and paternal gametes provides a reliable source of fish genetic
material for scientific and aquaculture purposes as well as for conservation of biodiversity.
Successful cryopreservation of fish sperm have been achieved for more than 200 fish species and
many fish species have been adequated for the purpose of cryobanking. Cryopreservation of fish
embryo is not viable, mainly because of the same limitations as in fish oocytes, i.e., high chilling
sensitivity and low membrane permeability. However, cryopreservation of isolated embryonic
cells is another option for preserving both maternal and paternal genome. In this paper, an
overview of the current state of aquatic species is followed by a discussion on the sperm,
embryos, oocytes and embryonic cells - blastomeres.
Key words: cryopreservation, sperm, embryo, oocyte, blastomere
INTRODUCTION
Cryopreservation is a long-term storage technique with very low temperatures to preserve the
structurally intact living cells and tissues for extended period of time at a relatively low cost.
Cryopreservation is to preserve and store the viable biological samples in a frozen state over
extended periods of time. A very important part research in cryopreservation is to reveal the
underlying physical and biological responses of the cell and cause of cryoinjury, especially those
associated with the phase change of water in extracellular and intracellular environments (Mazur
1984). From the original slow-cooling study, another cryopreservation approach has moved to
easier and more efficient technique-vitrification, Cryoprotective agents has to gain access to all
the parts of the system. Cryopreservation considers the effects of freezing and thawing.
Therefore, the diffusion and osmosis processes have important effects during the introduction of
cryoprotective agents, the addition or removal of cryoprotectants, the cooling process, and during
thawing. These phenomena are amenable to the experimental design and analysis. Thus, reliable
methods can be developed for preserving a very wide range of cells and some tissues. These
methods have found widespread applications in biology, biomedical technology and
conservation.
Germplasm cryopreservation includes storage of the sperm, eggs and embryos and contributes
directly to animal breeding programmes. Germplasm cryopreservation also assist the ex
situ conservation for preserving the genomes of threatened and endangered species. The
establishment of germplasm banks using cryopreservation can contribute to conservation and
extant populations in the future. Since the first successful cryopreservation of bull semen (Polge
et al. 1949), cryopreserved bull semen has been used to propagate the rare and endangered
species using assisted reproduction techniques. Every year, more than 25 million cows are
artificially inseminated with frozen-thawed bull semen (Foote 1975) and many bovine calves
have been produced using the transfer of cryopreserved embryos into cow (Mapletoft and Hasler
2005). Tissues, cultured cell lines, DNA and serum samples could be frozen and store in
cryogene bank. For example, mice and sheep have been generated from frozen-thawed pieces of
ovary that have been replaced in a female and stimulated to ovulation. (Gosden et al. 1994;
Candy et al. 2000; Sapundzhiev 2008). The principle of testicular cell freezing and
transplantation has been demonstrated and is currently used for human male infertility (Clouthier
134
et al. 1996). Significant efforts are being made on non-mammalian species using cryobiology
techniques. In fish aquaculture, the successful cryopreservation of gametes and embryos could
offer new commercial possibilities, allowing the unlimited production of fry and potentially
healthier and better conditioned fish as required. Cryopreservation of reproductive products of
many aquatic species has been successfully achieved. Cryopreservation of aquatic sperm is
relatively common in the breeding and management of fish species, including salmonid,
cyprinids, silurids, and Acipenseridae (família) is well documented (Magyary et al. 1996;
Tsvetkova et al. 1996). However, cryopreservation of embryos and oocytes of aquatic species
have not been successful, except for eastern oyster eggs (Crassostrea virginica) (Tervit et al.
2005), larvae of eastern oyster (Paniagua-Chavez and Tiersch 2001) and larvae of the sea urchin
(Adams et al. 2006).
Cryopreservation technology applied to the preservation of fish gametes in aquaculture plays an

important role in seed production, genetic management of broodstock and conservation of
aquatic resources. Fish germplasm also plays a significant role in human genomic studies
because its relatively small size of the genome makes it easier for sequencing and ideal models
for studying the human disease. This would help in identifying the roles for human genes from
fish mutations and also in fish models for genes identified by human disease (Brownlie et al.
1998; Barbazuk et al. 2000). Aquatic species preservation would assist the development,
protection and distribution of research lines and would offer benefits for restoration of
endangered species.
Sperm
In 1949, Polge et al. (1949) successfully cryopreserved the avian spermatozoa using glycerol as a
cryoprotectant. Thereafter, cryopreservation of male gamete became possible. Blaxter (1953)
applied a similar approach for fish gametes and reported success with Atlantic herring
spermatozoa, achieving approximately 80% cellular motility after thawing. Since then,
cryopreservation of fish sperm has been studied and has been successful in more than 200
species (Kopeika et al. 2007; Tiersch et al. 2007; Tsai et al., 2010) and techniques of sperm
management have been established for freshwater and marine fish species, including carp,
salmonids, catfish, cichlids, medakas, white-fish, pike, milkfish, grouper, cod, and zebrafish
(Scott and Baynes 1980; Harvey and Ashwood-Smith 1982; Stoss and Donaldson 1983; Babiak
et al. 1995; Suquet et al. 2000; Van der Straten et al. 2006; Bokor et al. 2007; Tsai et al. 2010).
Many studies on cryopreservation of fish sperm have been carried out on economically important
freshwater species and attempts to cryopreserve sperm from the marine fish species tended to be
more successful when compared with those obtained from the freshwater fish (Tsvetkova et al.
1996). Although freshwater fish sperm are generally more difficult to cryopreserve, the
fertilization rates obtained from the cryopreserved marine fish sperm are similar to those
obtained with mammalian species (Tsvetkova et al. 1996). Controlled-rate slow cooling in
cryopreservation has been mainly used for fish sperm. Common carp has been studied using
frozen-thawed sperm with 95% fertilization and hatching rate.
Salmonid species spermatozoa have been successfully cryopreserved (Lahnsteiner 2000).

Another well studied cryopreserved group is cyprinids and some of these cyprinid fishes are
widely farmed throughout Asia and Europe. A fertilization and hatching rate of 95% using the
135
frozen-thawed sperm has been reported for the common carp and these results are not
significantly different from fresh sperm (Magyary et al. 1996). Tilapias are among the exotic
freshwater fishes that have been successfully established for fish farming in Taiwan; they have
been cryopreserved successfully and produced 40-80% motility with cryoprotectant DMSO
(Chao et al. 1987). The sperm of more than 30 marine fish species have been cryopreserved
successfully (Suquet et al. 2000; Gwo 2000; Van der Straten et al. 2006). Generally, high
survival and fertilization capacity has been obtained in frozen-thawed spermatozoa when
compared to freshwater species (Drokin 1993; Gwo 2000).
Successful cryopreservation of the sperm of aquatic invertebrate has been carried out for sea
urchin, oyster, starfish, abalone and coral (Adams et al. 2004a; Adams et al. 2004b; Gwo et al.
2002; Hagedorn et al. 2006; Kang et al. 2009). Dimethyl sulfoxide has also been reported as a
successful cryoprotectant for sperm cryopreservation; the concentration range used was 5 to 30%
for these species. Various levels of motility, ranging from <5% to 95%, have been reported for
the cryopreserved aquatic invertebrate sperm (Dunn and McLachlan 1973).
Embryos
Cryopreservation of embryos has become an integral part of assisted reproduction. Successful

cryopreservation of embryos is important because the biodiversity of both the paternal and
maternal genomes will be preserved. While cryopreservation techniques have been largely
established for the mammalian embryos, successful cryopreservation of intact fish embryos has
not yet been achieved. Factors limiting fish embryo cryopreservation include their
multicompartmental biological systems, high chilling sensitivity, low membrane permeability
and their large size, which gives a low surface area to volume ratio (Zhang and Rawson 1995).
The effect of such low ratio is a reduction in the rate at which water and cryoprotectants can
move into and out of the embryo during cryopreservation (Mazur 1984). Fish embryos are
osmoregulators; they are released into the external medium and activated. Then the vitelline
envelope separates from the plasma membrane and forms chorion. Studies on the chorion
permeability of zebra fish embryos clearly showed that it was permeable to electrolytes and a
range of cryoprotectant, including propane-1,2-diol, methanol, DMSO, ethylene (Zhang and
Rawson 1996). The chorion structure plays a crucial role as flexible filter for the transport of
some materials (Toshimori and Tsuzumi 1976) and protects against the microorganisms (Schoots
et al. 1982) Studies on zebra fish embryos have shown that the water permeability of the plasma
membrane at different developmental stages remained relatively stable. The permeability to
methanol (cryoprotectant) appeared to decrease during embryo development (Zhang and Rawson
1998). This also indicated that there was a gradual reduction in the permeability following the
fertilization in zebra fish embryos, as opposed to the generally held belief that the membrane
permeability of fish embryos reduced rapidly to minimum shortly after the fertilization
(Alderdice 1988).
The studies on the kinetics of subzero chilling injury in Drosophila embryos (Mazur et al. 1992)
and chilling sensitivity of zebra fish embryos have demonstrated that chilling injury plays an
important role in reduction of embryo survival during the exposure to subzero temperatures
(Zhang and Rawson 1995; Hagedorn et al. 1997). Chilling sensitivity has been shown for many
species and has been analyzed in fish embryos, including brown trout (Salmo trutta f. fario)
136
(Maddock 1974), rainbow trout (Oncorhynchus mykiss) (Haga 1982), carp (Cyprinus carpio)
(Dinnyes et al. 1998), fathead minnows (Pimephales promelas) (Cloud et al. 1988), goldfish
(Carassius auratus) (Liu et al. 1993) and zebrafish (Danio rerio) (Zhang and Rawson 1995;
Zhang et al. 2003). These studies demonstrated that the later stages (after 50% epiboly) were less
sensitive to chilling, but chilling sensitivity increased significantly as the temperature fell below
zero. The high chilling sensitivity of fish embryos, especially at early stages, their complex
membrane structure and large yolk are the main obstacles to achieve successful cryopreservation
of these embryos (Zhang and Rawson 1996). Chilling injury in embryos has been linked to the
inhibition of metabolic and enzymatic processes from low temperatures injuries which could be
detrimental in the embryonic development such as fish embryos (Dinnyes et al. 1998).
Cryoprotectant toxicity follows a similar pattern to chilling sensitivity with later stages being less
sensitive to cryoprotectant (Zhang et al. 2005; Zhang et al. 1993; Liu et al. 1993; Suzuki et al.
1995). Several studies have determined membrane permeability for zebra fish embryos (Zhang
and Rawson 1998; Hagedorn et al. 1997) and membrane permeability to water and most
cryoprotectants has been shown to be low (Zhang and Rawson 1996; Zhang and Rawson 1998).
Studies on the cryopreservation of zebra fish embryos demonstrated 8% embryo survival in 2M
methanol at -25 °C; however, no embryo survival was observed when frozen to -30 °C or below
(Zhang et al. 1993).
Cryopreservation studies on the embryos and larvae have been conducted on marine invertebrate
such as oysters, sea urchins, polycheate worms, coral and penaeid shrimp species (Liu et al.
2001; Gakhova et al. 1988; Lin et al. 1999; Olive and Wang 1997; Paniagua-Chavez and Tiersch
2001; Hagedorn et al. 2006; Tsai and Lin 2009). However, survivals of most of these species has
been inadequate in maintaining the structure and activity of embryos and larvae after freezing to
cryogenic temperatures. Embryonic and larval development of marine invertebrates after
cryopreservation often showed abnormalities in structure and colour (Odintsova et al. 2001). The
problems with invertebrate embryo cryopreservation associated with those identified with the
fish embryos are their low membrane permeability and high chilling sensitivity. Although
cryopreservation of the embryos has not been fully achieved, considerable progress has been
made in understanding the conditions required for fish embryo cryopreservation and this would
undoubtedly assist the successful protocol design in the future.
Oocytes
Oocyte cryopreservation is potentially the best way to preserve the female fertility.
Cryopreservation of fish oocyte has been studied (Isayeva et al. 2004; Plachinta et al. 2004;
Zhang et al. 2005; Guan et al. 2008; Tsai et al. 2009) which offers several advantages such as the
smaller sizes range, much lower water content in oocytes and absence of a fully developed
chorion that the permeability to water and solutes in oocyte is higher than embryo. Fish embryos
are too large to apply traditional cryopreservation protocol. Immature oocytes can be an
alternative for the mature eggs because of their smaller size (Hagedorn et al. 1996). However,
there is no practical technique available to induce the small oocyte to mature in vitro. A
technique to obtain the mature eggs from the late stage oocytes is available. Thus, the
combination of this technique and their cryopreservation could be a breakthrough. However, at
present, late stage oocytes cannot be successfully cryopreserved because their size is still not
small enough to result in much lower surface area to volume ratio. These reduce the rate at which
137
water and cryoprotectant move into and out of oocytes during the cryopreservation. Developing
the methods for cryopreservation of oocytes requires the screening of potential cryoprotectant
treatments, evaluation of tolerance to chilling, determination of the appropriate rate of freezing to
cryogenic temperatures and rate of thawing. Viability assessment methods of oocytes with trypan
blue (TB), fluorescein diacetate (FDA) + propidium iodide (PI) and adenosine triphosphate
(ATP) content assay have been developed for quick assessment of viability (Plachinta et al.
2004; Zampolla et al. 2006; Guan et al. 2008; Tsai et al. 2008; Tsai et al. 2009; Tsai et al. 2011;
Tsai and Lin 2012). A functional test based on in vitro maturation, followed by germinal vesicle
breakdown (GVBD) has also been shown effective for late stage III oocyte (Plachinta et al.
2004).
The permeability of the zebra fish oocyte membrane to water and cryoprotectants has been
studied (Zhang et al. 2005) and membrane permeability was shown to decrease with the
temperature and permeability was generally lower than those obtained from sea urchin eggs
(Adams et al. 2003) but higher than the immature medaka oocyte (Valdez et al. 2005). Studies on
zebra fish oocyte chilling sensitivity showed that those oocytes were very sensitive to chilling
and their survival decreased with decreasing temperature (Isayeva et al. 2004). Chilling
sensitivity in zebra fish oocytes was thought to be due to lipid phase transition of the oocyte
membrane (Pearl and Arav 2000). The phase transition in zebra fish oocytes showed that chilling
injury could occur when oocytes were exposed to temperatures between 12 to 22°C above the
water freezing temperatures (Drobnis et al. 1993; Pearl and Arav 2000). Cryopreservation of late
stage zebra fish oocytes has been studied using the controlled slow cooling and an optimum
cryoprotective medium and cooling rate identified. Guan et al. (2008) showed that although the
oocyte viability obtained immediately after freeze-thawing was relatively high with 88% using
TB staining; oocyte viability decreased to 29.5% after 2 h incubation at 22 °C. The study also
showed that the ATP level in the oocytes decreased significantly after thawing and all oocytes
became translucent. Cryopreservation of early stage zebra fish oocytes using the controlled slow
freezing has been reported by Tsai et al. (2009). The results suggested that 4M methanol in KCl
buffer was identified as the optimum cryoprotective medium. Although results obtained after the
cryopreservation using trypan blue and FDA+PI staining were promising with 69% and 54%,
especially with stage II ovarian follicles, the ADP/ATP ratio assay showed that the energy
system of these follicles had been compromised. Apparently the ADP/ATP ratio could be a
valuable measure of cellular injury after post-thaw incubation period as it reflected the metabolic
and energy status of population as well as indicating some measure of the potential for repair.
Furthermore, in vitro culture method is effective for assessing early stage zebra fish oocytes
growth competence in vitro. The early stage zebra fish oocytes can be cultured in vitro for 24 h,
stage I and II oocytes can grow to the sizes of early stage II and stage III oocytes after hCG
treatment. and also can be used for other teleost species (Tsai et al. 2010).
Studies on the cryopreservation of invertebrate oocytes and eggs over the past several decades
have been extraordinarily difficult to achieve (Koseoglu et al. 2001; Tsai et al. 2010; Lin et al.
2011; Lin and Tsai 2012). However, it was found that intracellular crystallization occurred in the
starfish oocytes at relatively high temperature that was very close to the temperature of
extracellular ice formation (Koseoglu et al. 2001). In order to avoid this problem, Hamaratoglu et
al. (2005) successfully cryopreserved starfish oocytes using ultra-rapid freezing technique, called
vitrification. High chilling sensitivity (Tsai et al. 2009) and low membrane permeability (Guan et
138
al. 2008) of zebra fish oocytes are major obstacles to the development of a successful protocol
for their cryopreservation as chilling sensitivity or cold shock can hinder slow cooling processes.
Vitrification may be another option to achieve successful cryopreservation for the oocytes.
Blastomeres
Blastomeres are the cells produced as the result of cell division and cleavage in the fertilized egg.
They are totipotent and pluripotent (depending on the stage of embryonic development) having
the ability to differentiate into any of the three germ layers or entire organism. They are different
from the muscle cells, blood cells or nerves cells. Although cultured somatic-cells from fish have
been cryopreserved successfully, their value is limited because of loss of development potential.
Cryopreservation of blastomeres can maintain the genetic diversity of both, nuclear genome and
mitochondrial DNA (Nilsson and Cloud, 1992). Blastomeres from the early embryos of fish still
retain pluripotency (Ho and Kimmel 1993) and their cryopreservation may be a promising
approach to preserve the genotypes of zygotes and reconstitution of the organism. Indeed, there
are several reports of germ-line chimeras created using the transplantation of blastomeres into
goldfish (Yamaha et al. 1997; Kusuda et al. 2004), zebra fish (Lin et al. 1992), medaka (Hong et
al. 1998; Wakamatsu et al. 2001) and rainbow trout (Takeuchi et al. 2001) embryos. Kusuda et
al. (2004) transplanted the frozen-thaw blastomeres into goldfish embryos and the blastomeres
differentiated into primordial germ cells. This report demonstrated that germ-line cells from the
cryopreserved blastomeres could develop into mature gametes of chimeric fish because the
blastomeres were not damaged by cryopreservation. Therefore, the cryopreservation techniques
are very important.
Cryopreservation of blastomeres has been successful in several fish species. In the first reported
studies, Harvey (1983) used a two-step freezing procedure, with ice-seeding at -6°C, and cooling
to -25°C, followed by immersion in liquid nitrogen. The survival rate of 84.8% was obtained
after cryopreservation of 50% epiboly zebra fish blastomeres. However, the results obtained
from a very small sample size and freezing rates were not controlled, rather tubes were allowed
to equilibrate in the cooled alcohol baths. Lin et al. (2009) demonstrated the effect of
cryopreservation on zebra fish blastomeres survival using the controlled slow cooling method. It
was shown that DMSO was the most toxic to zebra fish blastomeres. However, DMSO was the
best cryoprotectant in terms of survival of zebra fish blastomeres. Therefore, it is possible that
the cryoprotective effect of DMSO may be greater than its toxicity effect. Although the survival
rate in Lin's results progressed from 25% (Kopeika et al. 2005) to 70%, it was still lower than
that obtained by using two step methods. The comparisons between these studies must take into
consideration the different methodology. Vitrification of zebra fish blastomeres was studied
more recently and the highest blastomere survival was 93.4% (Cardona-Costa and Garcia-
Ximénez 2007). Cryopreservation of blastomeres was also carried out in rainbow trout, carp and
medaka after post-thawing. Rainbow trout blastomeres have been cryopreserved using the
controlled slow freezing procedures with a survival of 95% (Calvi and Maisse 1998). It has been
reported that the controlled slow freezing protocol adopted for rainbow trout was successfully
applied to carp blastomeres with survivals of 94% and 96% (Calvi and Maisse 1999). Lower
survival rates of cryopreserved blastomeres using controlled slow freezing have also been
reported for other fish species such as whiting (20%), medaka (34%), pejerrey (67%) and chum
salmon (59%) (Strussmann et al. 1999; Kusuda et al. 2002).
139
CONCLUSION
Cryopreservation of gametes and embryos are already routinely applied in the mammalian.
Cryopreserved sperm, oocytes and embryos are used for artificial insemination and embryo
transfer in the livestock industry. Cryopreservation also has enormous applications in the
artificial propagation of widely diverse aquatic organism. Sperm and embryonic cells
cryopreservaiton has been successful in a number of teleosts and invertebrate species. However,
cryopreservation of embryos and oocytes remain a major challenge. The practical application of
cryopreservation in the aquatic species needs more vigorous research efforts in this area and the
efforts may be prioritized on endangered, economical value and representative species from
various aquatic habitats. Cryopreservation of gametes, embryos and embryonic cells has become
of immense value in aquatic biotechnologies which provide an important tool for protecting the
endangered species, genetic diversity in aquatic species. The establishment of cryobanks to
utilize the cryopreservation worldwide would be a significant and promising task in the future.
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140
FISH OIL
Fish oil can be obtained from eating fish or by taking supplements. Fish that are especially rich
in the beneficial oils known as omega-3 fatty acids include mackerel, herring, tuna, salmon, cod
liver, whale blubber, and seal blubber. Two of the most important omega-3 fatty acids contained
in fish oil are eicosapentaenoic acid (EPA) and docosahexaenoic acid (DHA). Make sure to see
separate listings on EPA and DHA, as well as Cod Liver Oil, and Shark Liver Oil.
Fish oil is FDA approved to lower triglycerides levels, but it is also used for many other
conditions. It is most often used for conditions related to the heart and blood system. Some
people use fish oil to lower blood pressure, triglycerides and cholesterol levels. Fish oil has also
been used for preventing heart disease or stroke, as well as for clogged arteries, chest
pain, irregular heartbeat, bypass surgery, heart failure, rapid heartbeat, preventing blood clots,
and high blood pressure after a heart transplant.
Fish oil is also used to for many kidney-related problems including kidney disease, kidney
failure, and kidney complications related to diabetes, cirrhosis, Berger's disease(IgA
nephropathy), heart transplantation, or using the drug called cyclosporine.
Fish may have earned its reputation as "brain food" because some people eat fish to help with
depression, bipolar disorder, psychosis, attention deficit-hyperactivity disorder
(ADHD), Alzheimer's disease, developmental coordination disorder, migraine headache,
epilepsy, schizophrenia, post-traumatic stress disorder, and mental impairment.
Some people use fish oil for dry eyes, cataracts, glaucoma, and age-related macular
degeneration (AMD), a very common condition in older people that can lead to serious sight
problems.
Fish oil is taken by mouth for stomach ulcers caused by Helicobacter pylori (H.
pylori), inflammatory bowel disease, pancreatitis, an inherited disorder called phenylketonuria,
allergy to salicylate, Crohn's disease, Behcet's syndrome, and Raynaud's syndrome.
1
Women sometimes take fish oil to prevent painful periods; breast pain; and complications
associated with pregnancy such as miscarriage (including that caused by a condition
called antiphospholipid syndrome), high blood pressure late in pregnancy, early delivery, slow
infant growth, and to promote infant development.
Fish oil is also taken by mouth for weight loss, exercise performance and muscle strength,
muscle soreness after exercise, pneumonia, cancer, lung disease, seasonal allergies, chronic
fatigue syndrome, and for preventing blood vessels from re-narrowing after surgery to widen
them.
Fish oil is also used for diabetes, prediabetes, asthma, a movement and coordination disorder
called dyspraxia, dyslexia, eczema, autism, obesity, weak bones (osteoporosis), rheumatoid
arthritis (RA), osteoarthritis, psoriasis, an autoimmune disease called systemic lupus
erythematosus (SLE), multiple sclerosis, HIV/AIDS, cystic fibrosis, gum disease, Lyme
disease, sickle cell disease, and preventing weight loss caused by some cancer drugs.
Fish oil is used intravenously (by IV) for scaly and itchy skin (psoriasis), blood infection, cystic
fibrosis, pressure ulcers, and rheumatoid arthritis (RA).
Fish oil is applied to the skin for psoriasis.
How does it work?
A lot of the benefit of fish oil seems to come from the omega-3 fatty acids that it contains.
Interestingly, the body does not produce its own omega-3 fatty acids. Nor can the body make
omega-3 fatty acids from omega-6 fatty acids, which are common in the Western diet. A lot of
research has been done on EPA and DHA, two types of omega-3 acids that are often included in
fish oil supplements.
Omega-3 fatty acids reduce pain and swelling. This may explain why fish oil is likely effective
for psoriasis and dry eyes. These fatty acids also prevent the blood from clotting easily. This
might explain why fish oil is helpful for some heart conditions.
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Isinglass
2
Isinglass (/ˈaɪzɪŋɡlæs/ or /ˈaɪzɪŋɡlɑːs/) is a substance obtained from the dried swim
bladders of fish. It is a form of collagen used mainly for the clarification or fining of beer. It can
also be cooked into a paste for specialized gluing purposes.
Its origin is from the obsolete Dutch huizenblaas - huizen is a kind of sturgeon, and blaas is a
bladder. [1]
Isinglass was originally made exclusively from sturgeon, especially beluga, until the 1795
invention by William Murdoch of a cheap substitute using cod. This was extensively used
in Britain in place of Russian isinglass. The bladders, once removed from the fish, processed,
and dried, are formed into various shapes for use.
Foods and drinks

Before the inexpensive production of gelatin and other competing products, isinglass was used in
confectionery and desserts such as fruit jelly and blancmange.
Isinglass finings are widely used as a processing aid in the British brewing industry to accelerate
the fining, or clarification, of beer. They are used particularly in the production of cask-
conditioned beers, although a few cask ales are available which are not fined using isinglass. The
finings flocculate the live yeast in the beer into a jelly-like mass, which settles to the bottom of
the cask. Left undisturbed, beer will clear naturally; the use of isinglass finings accelerates the
process. Isinglass is sometimes used with an auxiliary fining, which further accelerates the
process of sedimentation.
Non-cask beers that are destined for kegs, cans, or bottles are often pasteurized and filtered. The
yeast in these beers tends to settle to the bottom of the storage tank naturally, so the sediment
from these beers can often be filtered without using isinglass. [citation needed]
However, some
breweries still use isinglass finings for non-cask beers, especially when attempting to repair bad
batches.
Although very little isinglass remains in the beer when it is drunk, many vegetarians [2] consider
beers that are processed with these finings (such as most cask-conditioned ales in the UK[3]) to be
unsuitable for vegetarian diets (although acceptable for pescetarians). [4] A beer-fining agent that
is suitable for vegetarians is Irish moss, a type of red algae also known
as carrageenan.[5] However, carrageenan-based products (used in both the boiling process and
3
after fermentation) primarily reduce hazes caused by proteins, but isinglass is used at the end of
the brewing process, after fermentation, to remove yeast. Since the two fining agents act
differently (on different haze-forming particles), they are not interchangeable, and some beers
use both.
Isinglass finings are also used in the production of kosher wines, although for reasons of kashrut,
they are not derived from the b luga sturgeon, as this fish is not kosher. [6]Wh ther the use of a
nonkosher isinglass renders a beverage nonkosher is a matter of debate in Jewish law.
Rabbi Yehezkel Landau, in Noda B'Yehuda, first edition, Jore Deah 26, for example, permits
such beverages.[6] This is the position followed by many kashrut-observant Jews today.
---------------------------------------------------------------------------------------------------------
----------- FISH GLUE
4
Fish glue is often made by heating the skin or bones of fish in water. It can also be made from
part of the fish’s air bladder which, in the case of glue made from sturgeon, is called isinglass.
Adhesives made from fish, as well as hide glue made from other animals, were sometimes used
in ancient Egypt. They are still used in art, for shoe and furniture repair, and to preserve old
manuscripts. Hide glue is typically manufactured from the skin of non-oily fish.
During medieval times in Europe, fish glue was often used to repair animal-based sheets called
parchments, which were used for writing. It was also used in painting materials by some artists in
China. Paintings and drawings were often coated with this type of glue in the 1800s. While the
glue by itself is typically brittle, it can be used along with other materials to restore paintings.
Artistic uses for the glue include its application as a binder, glazing agent, or protective coating
for paintings. The substance can also be used for building and repairing wooden antiques, as well
as building new products. It doesn’t always hold a piece enough if gravity is pushing on it, so
fish glue is sometimes used in combination with other types of glue when securing objects. Some
manufacturers produce such glues that can last in a bottle for a couple of years before being used.
5
Adhesives made from animal glue are often made out of the collagen in skin and other tissues. In
addition to fish, a number of animals such as rabbits and horses have been used to make glue.
While glue factories were built in places like Holland and the United States, fish glue is not
typically found as an industrial product. Many products, however, include a similar compound
called gelatin, including deserts, marshmallows, and capsules for pharmaceutical pills. Fish glue
is often sensitive to changes in humidity and temperature, and can shrink while drying, so it is
not always the preferred medium to use.
People who work as artists or in wood shops sometimes use fish glue for certain projects. For
most other applications, synthetic glues that can withstand many harsh conditions are generally
used. These glues are sometimes applied because these tend to stick different materials together
and are typically flexible. The adhesives, however, often need to be processed in heated pots or
have chemicals added to remain a liquid where used.
---------------------------------------------------------------------------------------------------
What is Fish silage?
Fish silage as described here is defined as a liquid product made from whole fish or parts of fish
that are liquefied by the action of enzymes in the fish in the presence of an added acid. The
enzymes break down fish proteins into smaller soluble units, and the acid helps to speed up their
activity while preventing bacterial spoilage.
Silage made from white fish offal does not contain much oil, but when it is made from fatty fish
like herring it may be necessary to remove the oil at some stage.
There are other methods of making liquid fish protein, for example by adding enzymes or
bacteria, but these are not described here.
How is fish silage made?
The raw material is first minced; suitably small particles can be obtained by using a hammer mill
grinder fitted with a screen containing 10 mm diameter holes. Immediately after mincing, 3·5 per
cent by weight of 85 per cent formic acid is added, that is 35 kg or about 30 litres of acid to one
tonne of fish. It is important to mix thoroughly so that all the fish comes into contact with acid,
because pockets of untreated material will putrefy. The acidity of the mixture must be pH 4 or
6
lower to prevent bacterial action. After the initial mixing, the silage process starts naturally, but
occasional stirring helps to ensure uniformity.
The production tank can be of any size or shape provided it is acid resistant; some steel
containers used for making or carrying the silage may need a polyethylene liner to prevent
corrosion. Concrete tanks treated with bitumen are suitable for holding large quantities. The size
and number of tanks depend on the amount and type of raw material available.
The rate of liquefaction depends on the type of raw material, its freshness, and the temperature of
the process. Most species can be used, but sharks and rays are rather difficult to liquefy, and
should be mixed in with other species. Fatty fish liquefy more quickly than white fish offal, and
fresh fish liquefy much more quickly than stale fish. It should be possible in most installations to
mince and add the acid immediately the raw material is received, thus avoiding slow liquefaction
of stale fish. The warmer the mixture, the faster the process; silage made from fresh white fish
offal takes about two days to liquefy at 20°C, but takes 5-10 days at 10°C, and much longer at
lower temperatures. Thus in winter it would be necessary to heat the mixture initially, or to keep
it in a warm area until liquid.
Minced untreated fish must be kept covered to keep out flies; once the acid has been added, flies
are not attracted to the mixture.
Once the silage is prepared it can be handled like any other liquid, and transported in bulk or in
containers. It can also be blended with cereals to make a semidry feed. Silage made from white
fish offal should be stirred as it is removed from the production tank to obtain a uniform batch,
since a bone-rich layer tends to settle at the bottom of the tank after a time. Silage made from
fatty fish is more homogeneous and there is little separation even after prolonged storage, but the
oil in it deteriorates very rapidly; if the oil has to be removed and used for other purposes, it can
be separated by heating and centrifuging.
Fish silage can be concentrated to reduce its bulk, but more experimental work needs to be done
to assess the commercial advantage of such a process.
7
A simple system for the manufacture of fish silage.
What acids can be used?
Several acids can be used, either alone or in combination. Hydrochloric or sulphuric acid can be
used; they are reasonably cheap, but a lower pH is required with these mineral acids than with
some organic ones, and this means greater corrosion problems, and the silage has to be
neutralized before use. Formic acid, an organic acid, is a good choice because preservation is
achieved at a slightly higher pH, it has some bacteriostatic action, and the silage need not be
neutralized before adding it to the feed, but it is more expensive than mineral acids.
Acids must be handled with care, and formic acid is no exception; operators should always wear
rubber gloves and goggles. The acid storage tank, made of resistant material, should be
inaccessible to unauthorized people.
The composition of fish silage
The composition of fish silage is very similar to that of the material from which it is made. A
typical analysis of white fish offal is 80 per cent water, 15 per cent protein, 4·5 per cent ash and
0·5 per cent fat, and the composition of silage from offal is virtually the same. Whole fatty fish
like sprats and sand eels have a higher protein and fat content, and correspondingly lower water
and ash content.
8
Samples from a batch of silage for analysis should be taken only after thorough mixing to ensure
that they are representative. Acidity should be measured when making large batches; with formic
acid the pH should be 3·6-4; if it is above 4 more acid should be added; if it is below 3·8 less
acid could probably have been used, with a saving in cost. The exact amount of acid has to be
found by experience, but the proportion given earlier is a good guide.
How long does fish silage keep?
Fish silage of the correct acidity keeps at room temperature for at least two years without
putrefaction. The protein becomes more soluble, and the amount of free fatty acid increases in
any fish oil present during storage, but these changes are unlikely to be significant nutritionally.
Fish silage in any event would probably not be stored commercially for more than about 6
months. Silage becomes smoother in consistency during storage, and develops a pleasant malty
odour.
How is fish silage used?
Fish silage is used in the same way as fish meal in animal feed. Fish meal contains about 65 per
cent protein whereas fish silage contains about 15 per cent, so that about four times as much
silage is required for the same protein intake. The most suitable outlet for silage appears to be in
pig farming, since it can be used in liquid feeding systems. Silage can be used alone, or with fish
meal; feeding trials show that pigs grow as fast on silage as on meal, and the quality and flavour
of the meat is good. Fish silage is used in the Danish pig industry, and most nutritional work has
been done there. Other animals have been fed on silage with good results; cow's milk and butter
are without taint, and egg production from hens is high.
The pros and cons of making silage
The main advantage of the fish silage process is that, in areas where there is no fish meal factory,
fish offal and waste fish can be utilized instead of being thrown away.
The advantages and disadvantages of making fish silage instead of fish meal can be summarized
as follows.
Capital cost of meal plant is fairly high; the cost of silage equipment is fairly low.
Processing of meal requires engineers and technical staff; silage can be made by unskilled
workers.
Smell is a problem when making meal, unless specially equipped plant is used; there is no smell
when making silage.
Transport of meal is cheap, because the stable concentrated powder is low in bulk; silage is more
expensive to carry because the liquid, which contains all the water that was in the fish, is four or
five times as bulky as meal.
9
Marketing of fish meal is long established and the product is well known; silage is little known
in the UK and if anything more than local production and use is envisaged, some marketing
effort would be required. Silage manufacture might sometimes serve as a preliminary step
towards making fish meal by proving the existence of a sufficient supply of raw material before
making a large investment.
Where might silage be the answer?
The silage process is most likely to be successful in areas where fish offal or waste fish is
regularly available, but the cost of sending it to the nearest meal plant is prohibitive, and where
there are farms, particularly pig farms, close by.
There is no limit to the size of a silage plant; a batch can be made in one oil drum or in a tank
holding several tonnes. Each situation has to be considered on its own merits, but the larger the
potential production and the greater the distance the silage has to be carried the more likely it is
that meal manufacture is more appropriate.
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Shark fins (Fin Rays)
The commercial value of the fins depends on their color, size, variety and quality. Depending on
the quality and quantity of rays present in the fins they are broadly classified into 2 verities,
generally known as black and white. Black fins usually fetch a lower price than white fins. The
translucent cartilaginous rods embedded in the fins of shark are the fin rays used in the
preparation of shark fin soup. These rays can be extracted from both freshly cut as well as dried
fins. The latter are soaked in water which is acidified with acetic acid with pH 2.5 to 5 for 2-3
days while freshly cut fins require less soaking time. The softened fins are then treated with hot
10% acetic acid at 60°C for an hour depending upon their size. The rays are separated manually,
washed well and dried in the sun. The dried rays which can have a moisture level of 5-8% are
stored in polyethylene bags. The shark fin soup is considered as a delicacy in countries like
China, Philippines, Hongkong, Singapore, etc. shark fins are in great demand particularly among
Chinese, for making ceremonial dish called shark fin soup.
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1
0
CHITIN AND CHITOSAN
Chitin is a white, hard, inelastic, nitrogenous, polysaccharide found in the outer skeleton of
insects, crabs, shrimps and lobsters and in the internal structures of invertebrates.
Chitosan is deacetylated chitin, and is polymer of ß (1-4) acetyl - D glucosamine.

It has multifarious uses in the cosmetic, pharmaceutical and medical industries.
It is even considered as a wonder drug of the twenty-first century due to its versatile utility.
Potential
Scope for chitin/ chitosan production in India
The international shrimp industry from harvest through various processing operations produces a
vast amount of potentially recoverable proteinaceous by-products in the form of shrimp heads
and shells which is one of the major raw materials for chitin/chitosan production.
Shells of other crustaceans viz. crabs, lobsters, squilla, cuttle fish bones also could be profitably
utilised.
11
Squilla
In India, it is estimated that more than one lakh tons of shrimp processing waste is being
wasted annually which could be gainfully utilised for manufacturing chitin a high value
industrial product. Another raw material for chitin is squilla.
It is estimated that a potential of around 50,000 tons of squilla is available of which nearly
5,000 ton is being thrown back into the sea. This is an important trawl by catch especially in
Mangalore and could be used for chitin/chitosan production.
Crab shells and lobster shells are also raw materials for chitin/chitosan production.
The estimated availability of crab shells is 30,000 - 40,000 tons in the Indian waters.
Important properties of chitosan

Medical grade micronised chitosan is biodegradable, non allergic, haemostatic, non toxic and
wound healing accelerator. Chitosan films are flexible, tough, transparent, clear and oxygen
permeable with good tensile strength. Chitosan could be used to make single and bipolymer
membranes , non woven fabrics and sponges for surgical applications. It is resistant to alkali,
digestive enzymes and urine. Chitosan also could be cross linked.
12
Uses of Chitosan
i) Clarification and Purification
• The property of long chain molecules of dissolved Chitosan to wrap the solid particles
suspended in liquids and to bring them together and agglomerate makes it suitable as a
coagulant aid.
• It is used in treatment of sewage effluents, purification of drinking water etc.
ii) Chromatography
The presence of free amino acid hydroxyl groups in chitosan is a good chromatographic
support.
iii) Paper and Textiles
The high molecular weight, poly cationic linear film forming and hydrogen bonding ability makes
chitosan an ideal polymer applicable in the paper industry.
The chelating ability, adhesive property and ionic bond forming characteristic of chitosan find
potential application in textiles.
Fabric seized with chitosan have good stiffness, improved dye uptake, added lustre and improved
laundering resistance.
13
iv) Photography
Due to the resistance of chitosan to abrasion, optical characteristic film forming ability and
behaviour with silver complexes chitosan has important application in photography.
v) Food and Nutrition

Chitosan supplemented chick feed and fish feed improved the weight gain in chicken and fish.
vi) Agriculture
It has potential application in agriculture such as germination and culturing to enhance self
protection against pathogenic organisms in plants and suppress them in soil, to induce chitinase
activity, in encapsulation of fertilizers, in liquid fertilizers and in controlled release of herbicides.
vii) Medical and Pharmaceutical
• bacteriostatic agent
• drug delivery vehicle
• enzyme immobilization
• film / membrane for dialysis
• artificial skull sponge for mucosal haemostatic agent wound dressing
• anti cholesteremic material
• anti sore composition
• antibillirubinemia agent
• preparation of self regulated drug delivery system
• sustained release / direct compression matrix tablets.
14
Technology
• Central Institute of Fisheries Technology (CIFT) Kochi has the distinction of perfecting
the technology for chitin and chitosan production in the country.
• The institute is imparting training to entrepreneurs who are interested in setting up such
units.
15
Raw material
• Dried/wet shells of prawns, squilla, crabs, lobsters etc., could be utilised.
• The shells thus used should be thoroughly free from sand and extraneous matter, so as to
reduce the ash content of the final product to less than 2%.
Deproteinisation
The shells are boiled with 3% NaOH for 30 minutes in a mild steel vessel to remove protein
stuck to head and shell. The boiled raw material is allowed to cool and it is washed with water to
remove all traces of alkali (could be tested with a pH paper).
Demineralisation
• The deproteinised shells are transferred to a mild steel vessel lined with fiber glass and is
treated with 3% HCl.
• This is kept for 30 minutes with occasional stirring till the reaction is complete.
• The excess acid is decanted and the residue is washed till the pH is normal.
Removal of water
• Excess water is removed using a screw press till the moisture is below 60%.
• The product thus obtained is called chitin.
Deacetylation of Chitin
• It is the process of conversion of chitin to chitosan.
• Chitin is heated at 90-95ºC for about one and a half hour with 40% Na2CO3 (caustic
soda) in a mild steel vessel.
• Excess alkali is drained off and the mixture is washed with water several times till it is
free from alkali.
• 85% of the alkali, thus removed could be reused in subsequent cycles.
16
Removal of water
• Excess water is removed in a screw press and the product thus obtained is wet chitosan
Drying
The above product is sun dried for 6-8 hours or in drier till the moisture content is less than 5%.
Care should be taken not to exceed the drier temperature beyond 60ºC. Chitosan thus obtained is
in the form of flakes.
Powdering and Packing
The chitosan flakes obtained could be powdered and packed in lots of 10,20,25 kg in HDP/
Polyethylene lined non woven sacks in a dry place. Chitin can be stored for one year whereas
Chitosan can be stored for nearly three months only.
Yield
Chitin represent 14-27% and 13-15% of the dry weight of shrimp and crab processing waste
respectively and squilla yields 15% chitin. On a conservative basis the yield is estimated as
• Dry raw material chitin 14% by wt
• Chitosan 10% by wt.
17
• Thus from 1000 grams of dry shell, we get a yield of 140 grams of chitin and 100 grams
of chitosan.
Uses
• Chitosan finds use as a sizing material for rayon and other synthetic fibres, cotton, wool
etc.
• It may also be used in the preparation of cosmetics and Pharmaceuticals and also as a
water-clarifying agent.
• Medical application of chitosan in the form of chitosan impregnated gauze and chitosan
film
• for treatment of chronic wounds and external ulcers,
• to arrest/minimise bleeding in neurosurgery,
• as artificial skin and kidney membrane,
• in plastic surgery,
• as contact lens,
• in periodontal application etc.
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Agar Production
INTRODUCTION
1. In addition to edible and other direct uses, marine algae provide a rich and diverse source
of raw material for the manufacture of seaweed gums, a group of natural compounds
characterized by their thickening and gelling properties.
2. Such compounds find wide application in the food, pharmaceutical and industrial sectors.
18
3. The three most important of these compounds, in terms of volume and value, are sodium
alginate (and its derivatives), carrageenan and agar.
4. An estimate in 19801 put total world production of these three gums at around 40,000
tons, valued at US$300 million.
This was obtained from 150,000 t (dry weight) of seaweed. A more recent
estimate has put annual world production at:
• Agar 7,000—10,000
• Carrageenan 12,000—15,000
• Alginates 22,000—25,000
•
PRODUCTION AND TRADE iN SEAWEED AND SEAWEED GUMS
• World production and trade in seaweed is very large, but the greater part of this
is intended for edible use, mainly in Japan, China and South Korea.
• Agar is obtained from certain red seaweeds, the most important of which are from the
genera Gracilaria, Gelidium and Gelidiella.
• Japan is the main consumer and producer of agar;
• Most of the 10,000 t of agar—yielding seaweed (agarophytes) that is estimated to enter
international trade each year is imported by Japan.
• Of this world-wide harvest, 63% comes from Chile, with the Philippines (15%), South
Africa (10%) and Brazil (6%) also significant suppliers.
• In 1984, Japanese production of agar amounted to almost 2,500 t (37% of the total world
production of around 6,700 t);
• other important producers were Spain (13%), Chile (12%), South Korea (9%) and
Morocco (8%).
• Alginates are obtained from a number of different brown seaweeds and since many of
these are cold- or temperate-water types,
• The main alginate producers (USA, UK, Norway and France) are able to use indigenous
sources of weed, such as Laminaria, Macrocystis and Ascophyllum.
• An exception is Japan, which relies on imports of weed from Norway.
• Over a third (8,000-10,000 t) of the world’s alginate production is estimated to be used in
developing countries, mainly in Asia, and almost all of it is imported by them.
India
• current domestic production is around 75 tons/yr (estimated).
• This would represent 1% of the total world production in 1984.
• Total production is set to almost double to around 140 t/year within the next few
years.
19
Production and marketing areas for seaweed. agar and alginates
• By international standards, Indian agar and alginates do not compare favourably in terms
of gel strength and viscosity.
• Although the Indian products are competitive on a cost basis and are not subject to export
restrictions,
• the world market offers little scope for most categories of Indian produced agar and
alginates.
• But occasional shipments of agar have been made by the larger producers to the USA,
UK and Japan
• From 1975 to 1984 there was a ban on the export of seaweed from India.
• The present export policy of the Government of India (1988-91) permits export ‘on
merit’ of all types of seaweed against the procurement of a licence.
• Such a licence is usually granted by the Joint Controller of Import and Export after due
consideration of each application.
• The present import policy of the Government of India (1988-91) restricts the import of
seaweed and other algae, fresh or dried, to licence holders who have to apply and fulfill
conditions laid down under the Export Control Act of 1955
2
0
which is administered by the Central Government and the Chief Controller of Imports and Exports
or an authorized official.
SEAWEED COLLECTION IN INDIA

• Location
• Although processing takes place in several states, commercial harvesting of seaweed, all
from natural sources, is limited to the southern portion of the Tamil Nadu coastline, from
Kanyakumari (Cape Comorin) in the south, northwards to the peninsula that forms the
Gulf of Mannar, a total distance of almost 300 km.
• Collection is particularly concentrated in that part of the ‘seaweed belt’ that runs along
the coast of Ramanathapuram District and includes the villages of Mundel, Valinokkam,
Chinna Ervadi, Kilakarãi, Kalimangundu, Periapattnam, Pudumadam, Seeniappa Darga,
Vedalai, Pamban, Chinnapalam and Rameswaram.
• Here, the seaweed is collected both from the waters
• off the mainland coast and those surrounding the chain of off-shore islands.
Species of seaweed utilized
• Agarophytes used in commercial processing are species of the genera Gracilaria,
Gelidium and Gelidiella.
• Where the gel strength of the agar is not critical, as in food use, Gracilaria alone may be
utilized.
• In other cases, and whenever bacteriological/IP grade agar is produced, Gelidium
or Gelidiella, separately or mixed with Gracilaria, is utilized.
• (The terms Gelidium and Gelidiella are often used interchangeably within the industry
although they are recognized as being separate genera).
• There is undoubtedly some variation in the distribution of the different seaweed varieties
along the coast, but it is not possible to define this with any precision.
• Gracilaria edulis (syn. G. lichenoides), found along the whole of the Tamil Nadu
coastline, is the most abundant and commonly used Gracilaria species; G. verrucosa
(syn. G. confervoides) occurs in estuarine/brackish water areas, such as are found near
Tuticorin, and is utilized by one or two producers.
• Other Gracilaria species found in Indian waters include G. crassa, G. corticata and
G. multipartita (syn. G. folizfera), and any one, or more, of these may be present in
indeterminate amounts in what is sold as ‘Gracikiria’ or G. edulis
• The particular species of Gelidium used do not appear to be identified within the industry,
either by the seaweed agent or the processor.
• Gelidiella is invariably stated to be Gelidiella acerosa and tends to be found in slightly
more rocky areas than, for example, Gracilaria.
21
• Indian alginate production is derived from Sargassum and Turbinaria seaweed.
• Industry sources do not usually name the particular species used, but the species are
believed to be predominantly Sargassum wightii and Turbinaria conoides, with some S.
myriocystum and T. ornata.
Seasonality of collection
• Most seaweeds are generally available from agents throughout the year,
although there are a few months when stocks are especially plentiful and others when they are less
so.
• Processors and agents agree that there is a peak in Gracilaria collection during January-
April.
• Gelidium/Gelidiella are usually described as being non-seasonal, although occasionally
the reverse is acknowledged.
• It is probable that growth of the seaweed varies somewhat according to local conditions
and this, together with other factors, such as prevailing weather conditions and the extent
to which seaweed collection is a primary or secondary activity within the fishing
community, gives rise to the ‘seasonality’ observed.
• There may be no collection for a short period around June, when the seas are rough, or in
November, during the heavy rains. July-August, when high winds have torn the weeds
free from their growth points, is said to be a peak period for Sargassum collection.
Methods employed
• For the people of the coastal villages, fishing is their main income and seaweed collection
is an important second source of income;
• for the women who are otherwise not actively employed in fishing it may be their only
income.
• Priorities are determined by weather conditions and the time of year,
• social and religious attitudes within the community and, of course, judgment as to which
of the two activities is more remunerative at a particular time.
• Harvesting of agarophytes is done through in-shore collection during low tide,
• on the shores of neighbouring islands and by diving from boats when the seaweed is
further out.
• Hand picking of seaweed is normally carried out by women and children equipped with
divers’ masks and a net bag.
22
• Metal scrapers have been in use in some areas in recent years and have made it possible
to harvest larger quantities of seaweed with less effort,
• but the landed seaweed tends to contain a higher proportion of rock and coral fragments
which are scraped up along with the weed.
• In addition, removal of the rootstock prevents regeneration, with the consequent threat to
future supplies.
• The collection of alginophytes is generally done by men since it involves picking larger
quantities of weed.
• Harvesting Sargassum and Turbinaria is rather easier than red seaweeds and landings are
less likely to contain those unwanted seaweeds which are so difficult to avoid when
collecting agarophytes.
Prices for seaweed paid by processor to agent.

Seaweed Price paid
(Rs./tonne, wet wt.)
• Gelidium/Gelidiella 5,000— 8,000
• Gracilaria’ 2,500— 3,500
• Sargassum/Turbinaria 750— 1,000
PRODUCTION OF AGAR IN INDIA

• Uses and types of agar produced
• The most important attribute of agar is its great gelling power and the wide range of
conditions under which it retains this property.
• Although, as has already been stated, Indian agar has a gel strength lower than that from
other sources, it neverthless meets a significant part of the domestic food and
pharmaceutical industries’ demand.
• Agar is used in the preparation of jellies, dairy products such as yoghurts, confectionery
of the jelly/marshmallow type, bakery products, including pie fillings and icings, and
canned meats.
23
• In India, it is widely used in such vegetarian foods and dishes as faluda and
blancmange.
• The Muslim community also traditionally consumes large quantities during

the Ramadan season.
• Although small amounts of agar may find use as a laxative or excipient,
• the major application of ‘pharmaceutical’ grade agar is as a culture medium

for the growth of micro-organisms such as bacteria and fungi. In this
context, pharmaceutical, or ‘IF’, grade agar,
• sometimes referred to as ‘bacteriological’ or ‘microbiological’ grade, is

also used by university and other research establishments and laboratories.
• (The term ‘IF grade’, used to denote the fact that the agar meets Indian
Pharmacopoeia standards, is used hereafter in this report since it is used
widely within the Indian agar industry.)
• Its related use as a medium for plant tissue culture is more recent, but one
which is gaining an increasing market.
• Among the other minor uses of agar is the preparation of casting moulds,
especially those used in dentistry.
• The chemical fraction largely responsible for the gelling properties of agar
is agarose, and it finds specialized use in laboratories carrying out
biochemical separations.
• However, to date, there has been no Indian production of agarose, the small
domestic requirement being met by imports.
• Agar is produced in several different physical forms, the most common

being the mat, or strip, form, which is the simplest to produce.
• Where there is a particular requirement on the part of the end-user for high
gel strength food-grade agar,
• it is produced in the form of shreds or ‘individuals’, the latter essentially

being strands of larger dimensions than the shreds; both are produced to
order, using Gelidium, rather than Gracilaria, as the raw material.
24
UNIT: V
1
HUMAN IMPACTS ON MARINE MICROBIAL DIVERSITY
Over six billion people now populate the world, and the impacts of our
activities are felt in every corner of the globe, including the oceans. The
biodiversity of marine microbes is likely to be affected by human activi-
ties on both global and local scales.
On the global scale, all organisms in the oceans, including microbes, will
respond to the chief fea-ture of global climate change: temperature changes.
Elevated temperatures have been found to bring about increases in the
numbers of certain waterborne pathogens.
Higher temperatures can also trigger the activity of certain microbial genes,
including virulence genes that can lead environmental pathogens to cause
disease in humans, corals, and other macroorganisms
Temperature changes in the oceans may also disturb the delicate balance
between the numbers of bacteria and phages. The checks and balances
system between viruses and their bacterial hosts has recently been
recognized as a determinant of bacterial abundance and diversity and of the
efficiency of carbon cycling in a given microbial community. It is possible
that climate change may not have drastic out-ward effects on the balance
between bacteria and phage, however, given the flexibility of the system
and the adapt-ability of microorganisms.
On a local level, the ozone hole over the Antarctic, a conse-quence of

human releases of ozone-depleting chemicals, is probably having effects on
microbial populations there. The gap in the ozone layer allows high levels
of ultraviolet rays to reach the surface of the ocean, and is likely to increase
micro-bial mutation rates and change microbial community compo-sition in
Antarctic waters.
MICROBES
Local impacts also include the release of exotic ballast water. The practice of
ballast water dumping is known to release both invasive macroorganisms and
potentially harmful microorganisms in coastal waters.
Nutrient loading, whether from fish farming activities or from runoff, has had
2
massive impacts on coastal environments. Fish farms have proven
responsible for eutrophication (addi-tions of high concentrations of nutrients)
of surrounding waters, resulting in large changes in the local microbial com-
munities. Fish farming activities and runoff together have resulted in an
increase in the frequency of coastal phyto-plankton blooms, including
harmful algal blooms that cost fishermen and governments millions of dollars
every year.
Large-scale harvesting of the marine macrofauna by humans has changed the

food webs of the oceans and is likely to be affecting marine equilibria and
microbial diversity, driving the numbers of some species up and others down.
In Peru in the 1970s, for example, over-fishing led to large phytoplankton
blooms and a succession of bacteria that created large zones of depleted
oxygen, called “dead zones,” in coastal waters. In this case, human activities
led directly to a fundamental and devastating change in the microbial
ecosystem. The exact nature of the effects of food web changes resulting
from over-fishing is little understood and requires further study.
CRITICAL MICROBIALLY-MEDIATED EQUILIBRIA THAT

IMPACT ENVIRONMENTAL AND HUMAN HEALTH
While it is true that marine microbial systems drive the biogeo-chemical

cycles that make life possible on this planet, marine microbes also have more
direct, immediate effects on human health and the well-being of the ocean
ecosystem. Many of these direct effects are the result of fragile microbial
equilibria, balancing points between opposing trends that could lead to
serious repercussions for humans and our environment.
The equilibrium between bacteria and viruses in the oceans is an example of

the kind of critical balancing act microbes per-form every day. Changes in
water temperature and ultraviolet radiation (UV), two factors known to be
impacted by human activities, are known to disturb the relative numbers of
bacteria and viruses in the oceans, with possibly disastrous results for human
health. The virulence of a virus that preys on the bacterium responsible for
cholera (Vibrio cholerae), for example, is affected by subtle changes in
temperature. Hence, coastal temperature is a key determinant of the burden of
cholera in coastal waters—an important matter to humans who live near those
3
areas. Studies indicate UV can convert viruses between active and dormant
forms, so atmospheric changes that increase the amount of light in these
wave-lengths that reaches the oceans can upset the balance between viruses
and their hosts, possibly leading to uncon-trolled epidemics in fish,
invertebrates, or humans.
Microbial communities in the oceans also maintain the balances that can keep
harmful algal blooms in check. Algal blooms can poison humans and wildlife
that consume shellfish tainted by the algae. It is now known that nutrient
pollution can disturb coastal marine microbes, trig-gering these blooms.
Symbiotic equilibria between marine microbes and their hosts could also be
upset by human activities. Increases in water temperature, for example,
compel corals to drive out their bacterial symbionts. Marine microbes
mediate the nutrient ratios in seawater, and releases of nutrients from runoff,
wastewater treatment facilities, or other sources that upset those ratios can
seriously unbalance ecosystem health.
Marine systems are highly connected with one another— more so than
terrestrial systems. As a result, altering micro-bially-mediated equilibria in
one part of the ocean will often have impacts on adjacent areas and far-flung
regions. The coupling between the sediment (called the benthic zone) and
water (called the pelagic zone) in coastal areas is particularly tight and
changing one of those components will inevitably affect the other. Similarly,
the deep ocean collects material from the upper ocean—the two are
somewhat separate but inextricably linked.
MODELS FOR STUDYING THE MICROBIALLY-MEDIATED

EQUILIBRIA
Model systems are needed for studying the microbially-mediated equilibria

that relate to human and environmental health. Some candidate models
include:
 Cyanobacteria and cyanophage would serve as a good model for

investigating the balances between hosts and viruses. The corals that
have been driven north by warm waters that stimulate Vibrio toxicity to
the coral’s symbiotic zoozanthellae would be an excellent system for
studying the impacts of human activities on symbioses.
4
 The Chesapeake Bay could be a good model system of a highly-
impacted coastal marine ecosystem. Nutrient inputs to the bay have
been curtailed, but these restric-tions have not yet resulted in a marked
improvement on measures of ecological health.
 Lightly stratified marine systems, like the Red Sea, and highly
stratified pristine coastal systems could serve as good models for
comparison against one another to learn about the conditions that can
lead to anoxia.
 Oligotrophic systems (nutrient-poor) and eutrophic coastal systems

(nutrient- contaminated) could make good comparative systems for
understanding the susceptibility and resilience of equilibria to nutrient
loading.
A model of harmful algal blooms is critically needed. The mechanisms and
triggering factors behind these phenomena are not known, and a suitable
system for study has yet to be found.
Model ballast water systems are also needed. A great deal of water and many
billions of microbes are being moved around the world as ballast, but the
effects of these activities are little understood.
REVERSIBILITY OF CHANGES IN MICROBIALLY-

MEDIATED EQUILIBRIA
Clearly, the critical equilibria that marine microbes maintain can be easily
perturbed by human actions, and many of these conditions, like the balances
that keep harmful algal blooms in check, are already in a dis-turbed state.
However, some of these impacts may be reversible. Nutrient pollution, for
example, which affects the equilibria that control algal blooms and nutrient
concentrations in coastal waters, could be controlled by preventing sewage
dumping into the ocean and by restoring the wet-lands and salt marshes that
filter nutrients in runoff before it reaches the oceanPreventing the emission of
ozone-depleting chlorofluorocarbons would allow the hole in the ozone layer
over the Antarctic to recover within decades. A more intact ozone layer
would prevent a great deal of harmful UV from reaching the oceans and
would relieve bacterial-viral equilibria of the adverse effects of UV.
5
In an effort to limit pathogen releases, water used in fish farming operations
could be treated and recycled within the system. Limiting releases to the
oceans would lower the numbers of farm- associated pathogens to which wild
populations are exposed and would restore local balances between
pathogens and hosts. Recycling would also eliminate (or at least curtail) the
release of nutrients to local waters. Nitrogen could be removed from farm
water using an anaerobic ammonia process carried out by marine bacteria.
Aquaculture without biological and chemical pollution is a worthy goal for
the industry.
Humans have impacted marine equilibria in many ways, and the time
required for these systems to recover is not known. Education on these topics
is necessary to convey the severity of these impacts to the global community
so that aggressive steps can be taken to reverse them
USING MARINE MICROBES TO AMELIORATE

ENVIRONMENTAL DETERIORATION
The metabolic diversity of marine microorganisms not only makes them

useful in biotechnology applications, it makes them versatile tools for
addressing environmental problems. One prime environmental application for
these organisms is bioremediation—the treatment of chemical contamination
using microorganisms. The cleanup of hydrocarbons, specif-ically petroleum
products, is an especially pressing matter in the oceans, where accidents
aboard oil tankers can release thousands of gallons of oil in a single incident.
In some cases, fertilizing the indigenous microbial communities on the
affected beaches with nitrogen and phosphorus can speed the
6
degradation of the spilled oil, but bioremediation options in open water are
limited because of difficulties in delivering sufficient nutrients to sustain
biodegradation. It is now known that the actions of an entire microbial
community are necessary to break down complex organic matter, including
petroleum.
A super-organism that could carry out the entire process was sought, but was
never iso-lated or designed.
A cluster of genes that carry out the degradation of chlori-nated biphenyls,

called the BPH cluster, have been isolated and are now being applied in
treating dredged contaminants from the Hudson River estuary.
Today, most research in bioremediation in the marine envi-ronment is

focused on the organisms already present in the affected areas. For a number
of reasons, few efforts are underway to develop engineered microorganisms
to address problems of chemical contamination. There are particular
problems with respect to releasing microbes for bioremedia-tion into aquatic
environments; confining the organisms to the site of concern, for example,
would be difficult.
Finally, there is a possibility that marine viruses can be used to control

harmful algal blooms in a sort of “viral therapy.” Viruses may be isolated
from the algal species responsible for blooms, then engineered or otherwise
enhanced in the labo-ratory, and released in a bloom. This approach holds
great potential for controlling diseases in aquaculture settings.
CONTROL OF OIL SPILS AND BIOREMEDIATION
The Fate of Oil in the Marine Environment

Crude oil and petroleum distillate products introduced to the marine
environment are immediately subject to a variety of physical and chemical, as
well as biological, changes. Abiological weathering processes include
evaporation, dissolution, dispersion, photochemical oxidation, water-in-oil
7
emulsification, adsorption onto suspended particulate material, sinking, and
sedimentation. (Figure: 1)
Biological processes include ingestion by organisms as well as microbial

degradation. These processes occur simultaneously and cause important
changes in the chemical composition and physical properties of the original
pollutant, which in turn may affect the rate or effectiveness of
8
biodegradation. The most important weathering process during the first 48
hours of a spill is usually evaporation, the process by which low- to medium-
weight crude oil components with low boiling points volatilize into the
atmosphere. Evaporation can be responsible for the loss of one- to two-thirds
of an oil spill’s mass during this period, with the loss rate decreasing rapidly
over time. Roughly one-third of the oil spilled from the Amoco Cadiz, for
example, evaporated within the frost 3 days. Evaporative loss is controlled by
the composition of the oil, its surface area and physical properties, wind
velocity, air and sea temperatures, sea state, and the intensity of solar
radiation. The material left behind is richer in metals (mainly nickel and
vanadium), waxes, and asphaltenes than the original oil. With evaporation,
the specific gravity and viscosity of the original oil also increase. For
instance, after several days, spilled crude oil may begin to resemble Bunker C
(heavy) oil in composition.
None of the other abiological weathering processes accounts for as significant
a proportion of the losses from a spill. For example, the dissolving, or
dissolution, of oil in the water column is a much less important process than
evaporation from the perspective of mass lost from a spill; dissolution of even
a few percent of a spill’s mass is unlikely. Dissolution is important, however,
because some watersoluble fractions of crude oil (e.g., the light aromatic
compounds) are acutely toxic to various marine organisms (including
microorganisms that may be able to degrade other fractions of oil), and their
impact on the marine environment is greater than mass balance
considerations might imply.
9
Dispersion, the breakup of oil and its transport small particles from the
surface to the water column, is an extremely important process in the
disappearance of a surface slick. Dispersion is controlled largely by sea
surface turbulence: the more turbulence, the more dispersion. Chemical
dispersants have been formulated to enhance this process. Such dispersants
are intended as a first-line defense against oil spills that threaten beaches and
sensitive habitats such as salt marshes and mangrove swamps. Although used
widely in other countries, dispersants as have had trouble being accepted in
the United States.
The National Research Council has generally approved their use, but
effectiveness and, to a lesser degree, toxicity remain concerns. Dispersed oil
10
particles are more susceptible to biological attack than undispersed ones
because they have a greater exposed surface area. Hence, dispersants may
enhance the rate of natural biodegradation.
11
Water-in-oil emulsions, often termed “mousse,” are formed when seawater,
through heavy wave action, becomes entrained with the insoluble
components of oil. Such emulsions can form quickly in turbulent conditions
and may contain 30 to 80 percent water. Heavier or weathered crudes with
high viscosities form the most stable mousses. Mousse will eventually
disperse in the water column and/or be biodegraded, but may first sink or
become stranded on beaches. A water-in-oil emulsion is more difficult for
microorganisms to degrade than oil alone. Mousse formation, for example,
has been suggested as a major limiting factor in petroleum biodegradation of
the Ixtoc I and Metula spills, probably because of the low surface area of the
mousse and the low flux of oxygen and mineral nutrients to the oil-degrading
microorganisms within it . Natural biodegradation is ultimately one of the
most important means by which oil is removed from the marine environment,
especially the nonvolatile components of crude or refined petroleum.
In general, it is the process whereby microorganisms (especially bacteria, but

yeasts, fungi, and some other organisms as well) chemically transform
compounds such as petroleum hydrocarbons into simpler products. Although
some products can actually be more complex, ideally hydrocarbons would be
converted to carbon dioxide (i.e., mineralized), nontoxic water-soluble
products, and new microbial biomass. The mere disappearance of oil (e.g.,
through emulsification by living cells) technically is not biodegradation if the
oil has not actually been chemically transformed by microbes.
The ideal may be difficult to reach, particularly in a reasonably short time,

given the recalcitrance of some petroleum fractions to biodegradation
(discussed below) and the many variables that affect its rate and extent. Man-
made bioremediation technologies are intended to improve the effectiveness
of natural biodegradation.
Biodegradation and the Chemical Nature of Petroleum Far from being a

homogeneous substance, crude oil is a complex mixture of thousands of
different chemical compounds. In addition, the composition of each
accumulation of oil is unique, varying in different producing regions and
even in different unconnected zones of the same formation.
The composition of oil also varies with the amount of refining. Significantly,
12
the many compounds in oil differ markedly in volatility, volubility, and
susceptibility to biodegradation. Some compounds are readily degraded;
others stubbornly resist degradation; still others are virtually
nonbiodegradable. The biodegradation of different petroleum compounds
occurs simultaneously but at very different rates. This leads to the sequential
disappearance of individual components of petroleum over time and, because
different species of microbes preferentially attack different compounds, to
successional changes in the degrading microbial community .
Since components of petroleum degrade at different rates, it is difficult and

misleading to speak in terms of an overall biodegradation rate. Petroleum
hydrocarbons can, in general, be divided into four broad categories: saturates,
aromatics, asphaltenes, and resins. Saturated hydrocarbons- those with only
single carbon-carbon bonds—usually constitute the largest group. Of these,
the normal or straight-chain alkane series is the most abundant and the most
quickly degraded. Compounds with chains of up to 44 carbon atoms can be
metabolized by microorganisms, but those having 10 to 24 carbon atoms
(CIO-C24) are usually the easiest to metabolize. Shorter chains (up to about
C12) also evaporate relatively easily. Only a few species can use Cl -C4
alkanes; C5 -C9 alkanes are degradable by some microorganisms but toxic to
others. Branched alkanes are usually more resistant to biodegradation than
normal alkanes but less resistant than cycloalkanes (naphthenes)-those
alkanes having carbon atoms in ringlike central structures. Branched alkanes
are increasingly resistant to microbial attack as the number of branches
increases. At low concentrations, cycloalkanes may be degraded at moderate
rates, but some highly condensed cycloalkanes can persist for long periods
after a spill. Light oils contain 10 to 40 percent normal alkanes, but
weathered and heavier oils may have only a fraction of a percent. Heavier
alkanes constitute 5 to 20 percent of light oils and up to 60 percent of heavier
oils. Aromatic hydrocarbons are those characterized by the presence of at
least one benzene (or substituted benzene) ring. The low-molecular-weight
aromatic hydrocarbons are subject to evaporation and, although toxic to much
marine life, are also relatively easily degraded. Light oils typically contain
between 2 and 20 percent light aromatic compounds, whereas heavy oils
contain 2 percent or less. As molecular weight and complexity increase,
aromatics are less readily degraded. Thus, the degradation rate of
polyaromatics is slower than that of monoaromatics. Aromatics with five or
13
more rings are not easily attacked and may persist in the environment for
long periods. High-molecular-weight aromatics comprise 2 to 10 percent of
light oils and up to 35 percent of heavy oils. The asphaltic fraction contains
compounds that either are not biodegradable or are degraded very slowly.
One of the reasons that tar, which is high in asphaltenes, makes an excellent
road paving material is because it is slow to degrade. Tar balls, like mousse,
are difficult to degrade because their low surface area restricts the availability
of oxygen and other nutrients. Resins include petroleum compounds
containing nitrogen, sulfur, and/or oxygen as constituents. If not highly
condensed, they may be subject to limited microbial degradation.
Asphaltenes and resins are difficult to analyze and, to date, little information
is available on the biodegradability of most compounds in these groups. Light
oils may contain about 1 to 5 percent of both asphaltenes and resins; heavy or
weathered oils may have up to 25 percent asphaltenes and 20 percent resins.
To summarized biodegradation rates are typically highest for the saturates,

followed by the light aromatics, with high-molecular-weight aromatics,
asphaltenes, and resins exhibiting extremely low rates of degradation. As a
spill weathers, its composition changes: the light aromatics and alkanes
dissolve or evaporate rapidly and are metabolized by microorganisms. The
heavier
14
components that are harder to degrade remain. Weathered Prudhoe Bay oil
contains about 10 percent low-molecular-weight alkanes, 45 percent high-
molecularweight alkanes, 5 percent light aromatics, 20 percent high-
molecular-weight aromatics, 10 percent asphaltenes, and 10 percent resins.
Departures from the typical pattern of biodegradation, however, have been
noted by some researchers. For example, extensive losses of asphaltenes and
resins have been observed in some cases. The microbial degradation of these
relatively recalcitrant fractions has been ascribed to co- oxidation.
In this process, a normally refractory hydrocarbon may be partially degraded

in the presence of a second readily degraded hydrocarbon. Clearly,
degradation rates depend on many factors, and generalizations are difficult to
make. One conclusion, however, seems reasonable: no crude oil is subject to
complete biodegradation, and claims that all of a light oil or more than 50
percent of a heavy oil can be biodegraded in days or weeks are highly
suspect.
Microbial Processes and the Degradation of Petroleum

Despite the difficulty of degrading certain fractions, some hydrocarbons are
among the most easily biodegradable naturally occurring compounds.
Altogether, more than 70 microbial genera are known to contain organisms
that can degrade petroleum components (table 1). Many more as-yet-
unidentified strains are likely to occur in nature.
Moreover, these genera are distributed worldwide. All marine and freshwater
ecosystems contain some oil-degrading bacteria. No one species of
microorganism, however, is capable of degrading all the components of a
given oil. Hence, many different species are usually required for significant
overall degradation. Both the quantity and the diversity of microbes are
greater in chronically polluted areas. In waters that have not been polluted by
hydrocarbons, hydrocarbon- degrading bacteria typically make up less than 1
percent of the bacterial population, whereas in most chronically polluted
systems (harbors, for example) they constitute 10 percent or more of the total
population. Microorganisms have evolved their capability to degrade
hydrocarbon compounds over millions of years. These compounds are a rich
source of the carbon and energy that microbes require for growth. Before that
carbon is available to microorganisms, however, large hydrocarbon
1
molecules must be metabolized or broken 0 down into simpler molecules
suitable for use as precursors of cell constituents.
The activity of microorganisms at a spill site is governed by the organisms’

ability to produce enzymes to catalyze metabolic reactions. This ability is, in
turn, governed by their genetic composition. Enzymes produced by
microorganisms in the presence of carbon sources are responsible for
attacking the hydrocarbon molecules. Other enzymes are utilized to break
down hydrocarbons further. % Lack of an appropriate enzyme either prevents
attack or is a barrier to complete hydrocarbon degradation.
1
0
The complex series of steps by which biodegradation occurs constitutes a
metabolic pathway. Many different enzymes and metabolic pathways, not all
of which can be found in any single species, are required to degrade a
significant portion of the hydrocarbons contained in petroleum. (Thus,
advocates of using specially selected mixtures of microorganisms to
bioremediate oil spills or of creating, through recombinant DNA technology,
genetically engineered organisms are motivated in part by the desire to
combine all the requisite enzymes and pathways.) Knowledge of the
numerous metabolic pathways involved in the breakdown of hydrocarbons is
far from complete. Additional research characterizing the microbiology and
population dynamics of bacterial species capable of degrading oil is critical to
understanding the biodegradation process.
Environmental Influences on Biodegradation

Environmental variables can also greatly influence the rate and extent of
biodegradation. Variables such as oxygen and nutrient availability can often
be manipulated at spill sites to enhance natural biodegradation (i.e., using
bioremediation). Other variables, such as salinity, are not usually
controllable. The great extent to which a given environment can influence
11
biodegradation accounts for some of the difficulty in accurately predicting the
success of bioremediation efforts. Lack of sufficient knowledge about the
effect of various environmental factors on the rate and extent of
biodegradation is another source of uncertainty.
12
Oxygen
Oxygen is one of the most important requirements for microbial degradation
of hydrocarbons. However, its availability is rarely a rate-limiting factor in
the biodegradation of marine oil spills. Microorganisms employ oxygen-
incorporating enzymes to initiate attack on hydrocarbons. Anaerobic
degradation of certain hydrocarbons (i.e., degradation in the absence of
oxygen) also occurs, but usually at negligible rates. Such degradation follows
different chemical paths, and its ecological significance is generally
considered minor. For example, studies of sediments impacted by the Amoco
Cadiz spill found that, at best, anaerobic biodegradation is several orders of
magnitude slower than aerobic biodegradation. Oxygen is generally
necessary for the initial breakdown of hydrocarbons, and subsequent
reactions may also require direct incorporation of oxygen. Requirements can
be substantial; 3 to 4 parts of dissolved oxygen are necessary to completely
oxidize 1 part of hydrocarbon into carbon dioxide and water. Oxygen is
usually not a factor limiting the rate of biodegradation on or near the surface
of the ocean, where it is plentiful and where oil can spread out to provide a
large, exposed surface area. Oxygen is also generally plentiful on and just
below the surface of beaches where wave and tide action constantly assist
aeration. When oxygen is less available, however, the rates of biodegradation
decrease. Thus, oil that has sunk to the sea floor and been covered by
sediment takes much longer to degrade. Oxygen availability there is
determined by depth in the sediment, height of the water column, and
turbulence (some oxygen may also become available as the burrowing of
bottom-dwelling organisms helps aeration) .Low-energy beaches and fine-
grained sediments may also be depleted in oxygen; thus, the rate of
biodegradation may be limited in these areas. Pools of oil are a problem
because oxygen is less available below their surfaces. Thus, it may be
preferable to remove large pools of oil on beaches, as was done in Alaska,
before attempting bioremediation.
Nutrients
Nutrients such as nitrogen, phosphorus, and iron play a much more critical
role than oxygen in limiting the rate of biodegradation in marine waters.
Several studies have shown that an inadequate supply of these nutrients may
result in a slow rate of biodegradation.
13
Although petroleum is rich in the
carbon required by microorganisms, it is deficient in the mineral nutrients
necessary to support microbial growth. Marine and other ecosystems are
often deficient in these substances because non-oildegrading microorganisms
(including phytoplankton) consume them in competition with the
oildegrading species. Also, phosphorus precipitates as calcium phosphate at
the pH of seawater. Lack of nitrogen and phosphorus is most likely to limit
biodegradation, but lack of iron or other trace minerals may sometimes be
important. Iron, for instance, is more limited in clear offshore waters than in
sediment-rich coastal waters. Scientists have attempted to adjust nutrient
levels (e.g., by adding nitrogen- and phosphorus-rich fertilizers) to stimulate
biodegradation of petroleum hydrocarbons. This is the experimental
bioremediation approach used recently on about 110 miles of beaches in
Prince William Sound, Alaska. Researchers have also experimented with
alternative methods of applying nutrients. Given the
14
necessity of keeping nutrients in contact with oil, the method of application is
itself likely to be an important factor in the success of bioremediation.
Temperature
The temperature of most seawater is between –2 and 35oC. Biodegradation
has been observed in this entire temperature range, and thus in water
temperatures as different as those of Prince William Sound and the Persian
Gulf. The rates of biodegradation are fastest at the higher end of this range
and usually decrease—sometimes dramatically in very cold climates-with
decreasing temperature. One experiment showed that a temperature drop
from 25 to 5oC caused a tenfold decrease in response. At low temperature,
the rate of hydrocarbon metabolism by microorganisms decreases. Also,
lighter fractions of petroleum become less volatile, thereby leaving the
petroleum constituents that are toxic to microbes in the water for a longer
time and depressing microbial activity. Petroleum also becomes, more
viscous at low temperature. Hence, less spreading occurs and less surface
area is available for colonization by microorganisms. In temperate regions,
seasonal changes in water temperature affect the rate of biodegradation, but
the process continues year-round. Other Factors several variables, including
pressure, salinity, and pH may also have important effects on biodegradation
rates. Increasing pressure has been correlated with decreasing rates of
biodegradation; therefore, pressure may be very important in the deep ocean.
Oil reaching great ocean depths degrades very slowly and, although probably
of little concern, is likely to persist for a long time. Microorganisms are
typically well adapted to cope with the range of salinities common in the
world’s oceans. Estuaries may present a special case because salinity values,
as well as oxygen and nutrient levels, are quite different from those in coastal
or ocean areas. However, there is little evidence to suggest that
microorganisms are adversely affected by other than hypersaline
environments.
Extremes in pH affect a microbe’s ability to degrade hydrocarbons. However,
like salinity, pH does not fluctuate much in the oceans-it remains between 7.6
and 8. l—and does not appear to have an important effect on biodegradation
rates in most marine environments. In salt marshes, however, the pH maybe
as low as 5.0, and thus may slow the rateof biodegradation in these habitats.
15
General Advantages and Disadvantages of bioremediation
Bioremediation technologies have several attributes that, depending on the
situation and type of site may support their use in responding to some oil
spills (table 2). First, bioremediation usually involves minimal physical
disruption of a site. This attribute is especially important on beaches where
other available cleanup technologies (e.g., high- and low-pressure spraying,
steam cleaning, manual scrubbing, and raking of congealed oil) may cause
additional damage to beach- dwelling biota. Application of oleophilic (i.e., oil
seeking) fertilizers during the 1989-90 Alaska bioremediation experiments
was accomplished largely from shallow draft boats located just off the beach.
16
Second, bioremediation technologies appear to have no or only minor and
short-lived adverse effects when used correctly. Although research on
possible negative impacts is continuing, there is so far little evidence to
suggest that potential problems would be significant.
Third, bioremediation may be useful in helping remove some of the toxic

components of petroleum (e.g., low-molecular-weight aromatic
hydrocarbons) from a spill site more quickly than they might otherwise be
removed by evaporation alone. Fourth, bioremediation of oil spills is
accomplished on-site, and offers a simpler and more thorough solution to
polluted areas. In contrast, hot water spraying of an oiled beach, for example,
flushes some surface oil back into the water, and this oil must then be
recovered by skimmers. The recovered oil-and-water mixture must be
separated, and the oil disposed of or recycled. Also, a significant amount of
mechanical equipment and logistical capability is required to deal with a
large spill.
Because bioremediation equipment and logistics are usually simpler and less
labor intensive, costs may be lower than for other techniques. At the same
time, the total cost of cleanup is the more important concern, and where
bioremediation is used as an adjunct or secondary technology, total costs—as
well as total benefits--could be greater. The costs of monitoring
bioremediation must also be considered. Bioremediation technologies have
several general disadvantages. Although bioremediation may work faster-
potentially much faster—than natural biodegradation, it cannot produce
significant short term results. If beaches are threatened by a large offshore
spill, for instance, bioremediation is probably not appropriate as an initial
defensive measure.
In this circumstance, it would usually be more appropriate to get the oil out of
the water as quickly as possible or, failing this, to disperse or burn it before it
drifts onto beaches. bioremediation takes too much time to work as a primary
response measure for such a threat. Second, the bioremediation approach
must be specifically tailored to each polluted site. Bioremediation
technologies are not, and are unlikely soon to become, off-the-shelf
17
technologies that can be used with equal effectiveness in every locale.
Although other oil spill response technologies are subject to this same
constraint, the advance knowledge needed for bioremediation technologies is
greater. Advance knowledge of, for example, the efficiency of the bacteria
indigenous to an area in degrading oil, the availability of rate-limiting
nutrients, and the susceptibility of the particular spilled crude oil or refined
product to microbial attack is required, so prespill planning will be important.
Finally, the public is still unfamiliar with bioremediation technologies.

Although public attitudes toward “natural” solutions to environmental
problems are generally favorable, the lack of knowledge about
microorganisms and their natural role in the environment could affect the
18
acceptability of their use. Before bioremediation technologies are likely to be
widely used, their efficacy and safety will have to be convincingly
demonstrated and communicated to the public.
ENVIRONMENTAL ISSUES: EFFECT OF BIOFOULING AND

BIODETERIORATION ON MARINE STRUCTURE
MARINE FOULING
Fouling does not destroy materials directly. It is the settlement of
marine fouling organisms on all structures made of wood, steel, FRP,
aluminium and ferrocement exposed to seawater. Immediately after a
substrate is immersed in seawater, fouling settlement starts and the sequence
of processes are formation of a primary film or slime film (formed by
bacteria, fungi, diatoms and protozoa enmeshed in detritus), fixation of larvae
of macroscopic organisms (algae, tubeworms, bryozoans, hydroids,
barnacles, mollusks) and finally the growth of the fouling community. In the
case of ships because of fouling the roughness of hull and the fuel
consumption are increased while speed is reduced. Corrosion process in the
marine medium is closely related to the failure of antifouling coatings.
Underwater or splash zone of marine structures are subjected to a very harsh
environment where corrosion and biofouling combine to cause loss of
millions of rupees annually.
Bacteria, fungi, diatoms and algae are the most frequent vegetable
organisms attached while hydroids, bryozoa, tunicates, serpulids and
barnacles are the animal species generally recorded. Of these the barnacles
especially of the genus Balanus are the most aggressive, deteriorating the
organic coating, affecting the continuity and favouring corrosion. Variation in
temperature, salinity, pH, oxygen content and pollution influence this
process.
FOULING CONTROL
A periodical coating of antifouling coatings seem to be the only accepted
method for fouling prevention throughout the world. In the AF paint film,
biocides must be released during the lifetime of the coating and must cover a
wide spectrum of fouling species. Different antifouling coatings were
developed over the years according to the type of ship, area of operation of
19
ships, trading speed, vessel activity in days per year, maximum length of stay
in port and docking intervals. Fouling normally occurs when a vessel is
stationary and does not take place at speeds less than 6 knots.
Cuprous oxide, an inorganic toxicant and tributyl tin oxide (TBTO) is an
organic toxicant most commonly used in the antifouling coatings. Paints
based on organometallic compounds such as TBTO and tributyl tin fluoride
(TBTF) provide 4 to 5 years of fouling free life. However the use of these is
restricted due to the problem of environmental pollution.
The awareness of environment in the recent years paved way to the
development of alternate coatings and new procedures for fouling control.
Considering current antifouling regulation in different countries, the use of
coatings requires clearance from the Government. In general, TBT based
antifouling paints must not be applied to vessels of < 25 m in length and they
must have
11
0
biocide release rates less than 4 µg TBT cm -2 day -1. All copper based
coatings must have a copper release rate of less than 40 µg cm -2 day -1. Tin
free coatings using chemicals such as ammonium quaternary compounds and
polymeric silicones bonded to polymeric chain are reported to obtain a low
bio-adherence. Development of a system that uses non-stick mechanism to
give a glossy surface without biocides is also under study. The incorporation
of natural products of plant or animal origin, which have antifouling
properties in the antifouling coatings, is a new area of study.
BIODETERIORATION
Biodeterioration or biodegradation of materials can be defined as any
undesirable change in the properties of a material caused by the vital
activities of biological agencies organisms. Though these are considered
synonyms, Starkey (1976) defined biodeterioration as `biological that are
destructive or yield undesirable products or both’; and biodegradation as
`breakdown of undesirable materials to harmless or tolerable products’.
There are 3 factors to be taken into consideration for prevention of any form
of biodeterioration. These are the `material, the environment and the
organisms’.
There are different forms of biodeterioration, viz., (i) Biofouling which is in
the form of deterioration occurring when the mere presence of an organism or
its excrement renders the product unacceptable. (ii) Chemical assimilatory
biodeterioration occurring when a material is degraded for its nutritive value.
In the field of marine biodeterioration, the important areas are bacterial
deterioration, fungal attack, boring problem, biofouling and biocorrosion. In
India around 1,80,000 crafts comprising of catamarans, dug out canoes, built
up boats and modern mechanised boats are employed for fishing. Of these
majority are of wood and a loss of millions of rupees is incurred annually due
to biodeterioration of these boats. Wooden objects contain more than 70 % of
cellulose which is a good material suited for biological agencies. The
bacterial and fungal attack and boring problem are more concerned
Biodeterioration with small boats. With the advent of extended voyages,
larger vessels made of steel are in use whereby fouling closely associated
with biocorrosion became a major problem.
BACTERIAL DETERIORATION
11
Bacterial deterioration of wooden material
1 is a slow process. Many wood
destroying bacteria are able to attack cellulose, but some are capable of
attacking lignified cell wall also, particularly when wood is exposed for long
time to wet condition. Bacillus Spp., Pscudomonas spp. Vibrio spp.,
Aerobacter spp. and Aerogenes Spp. were reported from wooden materials.
They either inhabit wood or utilize cellulose as food. Bacteria initially
colonise the parenchyma cells of wood rays and resin ducts, but later walls of
cells are attacked and degraded by cellulase or pectinase activity or a
combination of both. The process in deterioration of wooden objects in
ground contact is slower, but opening up the pit membranes make gaseous
exchange easy. This causes the conditions inside the wood more aerobic
suitable for fungal growth and open pathways make fungal hyphae to pass
from cell to cell.
When immersed in sea water bacteria initiate the problem of fouling. The
initial step in fouling is the bacterial colonization of surfaces followed by
attachment of protozoa, fungi and microalgae resulting in `biofilm’ formation
which is followed by macrofouling.
FUNGAL DETERIORATION
Fungal deterioration Biological deterioration of wood is caused by wood
inhabiting fungi both on land and in water. They differ from ordinary green
plants in form and method of nutrition. They are unable to produce their own
food and are parasitic/saprophytic in nature deriving food from the cell
cavities of the host wood. Fungi possess certain enzymes capable of digesting
the cellulose. Due to enzymatic action the timber becomes soft and light,
spongy, inflammable and emit a mucky and unpleasant odour. Eventually
fungal attacked wood gets fully soaked in water and becomes heavy and loses
the nail holding properties and strength properties. In dry condition, the wood
cracks and these gradually become longer and deeper resulting in the failure
of such structures. Fishing crafts have to be periodically repaired or replaced
and the cost of this runs to several lakhs of rupees. Hence the problem is of
considerable economic importance and proper maintenance is essential.
Based on the development and the type of deterioration they cause on the
wood, two types are distinguished
a. wood staining fungi 11
b. wood destroying fungi 2
WOOD STAINING FUNGI
Fungi of this group do not destroy the wood but produce certain stains on the
surface, which are troublesome because of their objectionable appearance.
The wooden objects may take different shades of blue, black, brown and
green. Most staining fungi could cause soft rot under prolonged favourable
conditions. Protection against such decay can be accomplished by kiln drying
or temporarily by surface treatment with a water solution of anti-stain
fungicide. Wood destroying fungi Wood destroying fungi are those capable
of disintegrating the cell walls and thereby changing the physical and
chemical characteristics of wood. Wood undergoes marked change in colour,
texture and strength properties and eventually the wood becomes soft and
spongy. Well- known wood destroying fungi consist of 2-sub groups, brown
rot and the white rot types of Basidiomycetes. Both use cellulose and other
carbohydrates as nourishment, but only white rot type is capable of breaking
down lignin.
Soft rot fungi belonging to the cellulose-decomposing group are usually the
first fungal colonisers of wood. They consume sugars or simple
carbohydrates. Zygomycetes, Ascomycetes and Fungi impertectii belong to
this group. Usually the attack is superficial and generally occurs in the
wooden pieces exposed to high moisture content and on ground contact. In
degree of wood deterioration this is intermediate between stain and decay
11
3
Factors affecting fungal deterioration
Wood structure: The wood structure viz. the presence of extractives, resins
etc. influences the resistance to decay or the natural durability of the timber.
Sapwood will be susceptible to decay with a readily available supplementary
source of nutrients in the ray parenchyma and the absence of toxic extractives
in the cell walls. The heartwood can be highly resistant to decay with the
presence of toxic extractives and with the absence of nutrients.
Moisture: Microbiological deterioration can occur only if the wood material
has a moisture content exceeding 20 %. Decay fungi and stain fungi can
cause severe damage only when the moisture content is above the fibre
saturation point (30 %) level but at the same time the development of decay
is retarded by excess moisture.
Air: A supply of air is necessary for the growth of wood destroying fungi. An
amount of air equivalent to more than 20 % of the volume of the wood must
be available before decay can take place. Wood saturated with water is
devoid of sufficient air for fungal growth and consequently does not decay.
Temperature: Fungi can grow in wood at a fairly wide range of temperature,
about 15 to 30 0 C. The activity decreases at temperature above and below
this range and effective growth ceases at about 5 to 10 0 C at the lower limit
and 35 to 40 0 C at the higher limit.
Nutrition: Energy for most of the cell building materials for the organisms
are supplied by carbohydrate fraction consisting of cellulose, starches and
sugars and for some organisms by lignin fraction. The cellulose, hemi
cellulose and lignin constitute 95 % of the substance of most woods,
sufficiently abundant to meet the requirement of organisms.
pH: All decay fungi produce optimum development at about pH 6, though
soft rot fungi grow at pH 8 or 9.
Light: Light is needed for typical sexual reproduction among decay fungi.
Effects of fungal decay in woods
i. Alter physical and chemical characteristics of wood
ii. The normal colour is modified and distinctive odours are imparted to
wood.
iii. Reduces density
iv. Modifies heat and electrical conductivity of wood.
v. Reduces mechanical strength properties
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4
Boat parts subjected to fungal decay: Salt-water members above
waterline are more liable to fungal decay than water exposed surfaces.
Stem, transom planks, frame heads, beam-ends and bulwork, stanchion
ends and bulkheads are the parts most affected. Poor material (use of
sapwoods and unseasoned wood), warm climate, fresh water leaks and
dead air spaces are factors responsible for the decay.
Prevention
Taking certain precautions while construction of the boat and during
service can prevent the problem. Using decay resistant heartwood seasoned
to below 20% moisture level and
11
5
avoiding infected wood would resist the problem. All water should be
kept out and all the seams should be well caulked. Metal fastenings should
be kept tight. Exterior paint will keep out moisture but painting inside the
hull planks may be avoided allowing the hull planks to breathe. The
moisture that has entered into wood can be got rid of by drying or airing.
Suitable commercial wood preservatives should be used at the time of
construction and be repeated periodically while in use. Pentachlorophenol,
Copper Chrome Arsenate (CCA) and Creosote are some recommended
wood preservatives, which can be applied either by brush application or
by pressure treatment. The `dual treatment’ incorporating a waterborne
preservative such as CCA followed by an oil borne preservative such as
creosote gives superior protection to wood against fungal decay.
Marine wood borers
Destruction of wood by marine wood borers is of great economic concern.
Wooden structures exposed to marine environment are subjected to attack
by a range of wood boring marine organisms designated as `marine
borers'. They attack ships, log rafts, harbour piles and many other
waterfront structures causing structural damage by boring deep into the
wood making them unserviceable within a short span of time. These
animals are distributed throughout the salt waters of most of the world but
are more prevalent and destructive in the tropics than in the temperate
regions.
The marine borers that cause the greatest amount of damage are
categorized into two: bivalve molluscs and crustaceans each characteristic
in its general appearance and method of attacking wood. The molluscan
borers may be separated into two families - the Teredinidae or the wood -
boring shipworms, and the pholadidae or rock borers. The important
genera of wood boring molluscs are Teredo, Bankia, Nausitoria and
Martesia of which the first three are superficially worm like in appearance
and are known as `shipworms’. The damage caused by shipworms is
internal and can become quite extensive without being apparent. The
larvae make very small entrance holes on the surface of the wood, but
once within the wood they increase rapidly in size and develop the
characteristic worm like bodies. As the animal advances into wood, it
secretes a protective calcareous lining
11 for the burrow. As a result of the
continued boring, the structural strength
6 may be greatly reduced. Teredo
elongata, T. manni, T. furcifera,T. milleri, Bankiella carinata, B.
liliobankia and Nausitoria hedlei are the species important to India.
The pholadidae look very much like small clam in appearance and bore
into wood, clay, soft rock, shells and even into plastic and poor grades of
concrete. Pholadidae is represented by Pholas and Martesia of which
Martesia is of importance to India because of its widespread distribution,
density of attack and rapid succession of generation. The young attack
wood by boring small entrance holes and once within the wood, they
continue their boring and excavate the wood sufficiently to accommodate
the growth of their imprisoned bodies. M.striata and M.fragilis are
common to India.
11
7
Crustacean borers are distinct from the molluscan borers in their method
of attack, general structure and appearance. They do not become
imprisoned in the wood but are able to move about. The young and adult
alike attack the wood making narrow galleries, which seldom reach very
deep. The damage done by this group is less serious than by shipworms as
this is more evident to inspection and the excavation proceeds less rapidly.
The animals make extensive network of tunnels in the wood, which are
eroded away by wave action, which exposes unattacked surface for fresh
attack. The important crustacean borers are of two orders Àmphipoda’
and Ìsopoda’ and are represented by three major genera viz. Limnoria,
Sphaeroma and Chelura of which the latter is of minor importance to
India. Sphaeroma commonly called as `pill bugs’ grow to a size of 13 mm
long while Limnoria is much smaller growing to a size of 6 mm only. S.
terebrans, S. annandeli, S. walkeri, L. tripunctata, L. bombayensis, L.
insulae and L. andamanaensis are active in Indian waters.
Control of marine borers

The degree of resistance to borer attack depends on the species of timber
and different localities probably due to the presence of different species of
borers. The problem is more pronounced in tropical waters than in
temperate waters. Traditionally indigenous preparations such as fish oil,
crude oil, cashew nut shell liquid, coconut oil, sand, cement, black tar,
fuel oil etc singly or in combination are used for protection. Since most of
these preparations lack toxic property, CIFT has recommended treatment
of wood with chemical preservatives or use of physical barriers applied to
the surface of the timber. Use of Creosote, an oil borne preservative was
found to be successful in preventing teredenid attack. Water borne
preservatives such as copper-chrome- arsenic (CCA) compounds are very
effective against borers especially to crustacean borers. Dual treatment -
an initial treatment with a water borne preservative followed by an oil
borne preservative (Creosote) treatment - is very effective against both
types of borers and is recommended for areas of very severe borer attack.
Physical barriers such as metals (Copper, aluminium etc.), concrete and
plastic have been used to achieve protection viz., the hull below the
waterline area of boats is sheathed. Instead of copper, which is very
2
costly, aluminium-magnesium alloy0has been recommended by CIFT and
the sheathing has been standardized. Fibreglass reinforced plastic (FRP)
sheathing also is a proven method of protection.
Microbial Corrosion
Seawater is a well-known corrosive environment and any biological activity
can enhance its aggressiveness. The involvement of microorganisms in metal
corrosion process was suggested as early as in late 1890s. It was reported that
the corrosive action of water on lead could be due to ammonia, nitrites and
nitrates produced by bacteria. The interaction of a biofilm and the substratum
produces a new physical and chemical environment. The conditions at the
substratum
2
0
will be quite different to that in the bulk phase or in the unfouled surface and
the activity of microorganisms within biofilms will result in a range of
consequences. .
Mictrobial action may bring about metallic corrosion by one or more of the
following mechanisms:
(a) production of corrosion metabolic products
(b) production of differential aeration cells,
(c) disruption of protective films (natural and applied) and breakdown of
corrosion inhibitors.
Most of the time corrosion occurs as a result of more than one mechanism
either simultaneously or successively. Differential aeration cells can be
created between normally highly oxygenated surface and metal under macro
fouling or even under a thin layer of biofilm. The formation of various
corrosion products on the metal slows down the corrosion process. But
organisms disrupt these films and stimulate corrosion process. Hydrogen
sulphide produced by sulphate-reducing bacteria under anaerobic conditions
cause serious corrosion problems. There are several groups of bacteria, which
are strongly associated with corrosion. Sulphate reducing bacteria, iron
bacteria, slime forming bacteria, sulphur oxidizing bacteria and nitrogen
utilizing bacteria are the important ones. Sulfate reducers of the genus
Desulfovibrio are commonly reported groups.
PROTECTION METHODS AGAINST CORROSION

Prevention In the ocean where there are continuously changing physical,
chemical and biological parameters it is often difficult to predict biological
corrosion. Most often it is unexpected and is difficult to control, once
established in the system. To prevent or control the problem, the following
methods are used.
i. Use of biocides to control the biological activity.
ii. Use of anticorrosive coatings and application of Cathodic protection
procedures
iii. Upgradation of material
iv. Use of physical barriers/wrappings
RED TIDES: CAUSATIVE FACTORES

21 AND THE EFFECT OF
THE ORGANSIMS ON THE MARINE ENVIRONMENT
Red tide is a colloquial term used to refer to one of a variety of natural
phenomena known as harmful algal blooms or HABs. The term red tide
specifically refers to blooms of a species of dinoflagellate known as
Karenia brevis. It is sometimes used to refer more broadly to other types of
algal blooms as well.
The term red tide is being phased out among researchers for the following
reasons:
1. Red tides are not necessarily red and many have no discoloration at all.
2. They are unrelated to movements of the tides.
22
3. The term is imprecisely used to refer to a wide variety of algal species
that are known as bloom-formers.
Red tide is a common name for a phenomenon known as an algal bloom

(large concentrations of aquatic microorganisms) when it is caused by a few
species of dinoflagellates and the bloom takes on a red or brown color. Red
tides are events in which estuarine, marine, or fresh water algae accumulate
rapidly in the water column, resulting in coloration of the surface water. It is
usually found in coastal areas. It kills many manatees every year.
CAUSATIVE AGENT
These algae, known as phytoplankton, are single-celled protists, plant-like
organisms that can form dense, visible patches near the
water's surface. Certain species of phytoplankton, dinoflagellates,
contain photosynthetic pigments that vary in color from green to brown to
red.
When the algae are present in high concentrations, the water appears to be
discolored or murky, varying in color from purple to almost pink, normally
being red or green. Not all algal blooms are dense enough to cause water
discoloration, and not all discolored waters associated with algal blooms are
red. Additionally, red tides are not typically associated with tidal movement
of water, hence the preference among scientists to use the term algal bloom.
Some red tides are associated with the production of natural toxins, depletion
of dissolved oxygen or other harmful effects, and are generally described as
harmful algal blooms. The most conspicuous effects of these kinds of red
tides are the associated wildlife mortalities of marine and coastal species of
fish, birds, marine mammals, and other organisms.
CAUSES
The occurrence of red tides in some locations appears to be entirely natural

(algal blooms are a seasonal occurrence resulting from coastal upwelling, a
natural result of the movement of certain ocean currents) while in others they
appear to be a result of increased nutrient loading from human activities. The
growth of marine phytoplankton is generally limited by the availability of
23
nitrates and phosphates, which can be abundant in agricultural run-off as well
as coastal upwelling zones. Coastal water pollution produced by humans and
systematic increase in sea water temperature have also been implicated as
contributing factors in red tides.
Other factors such as iron-rich dust influx from large desert areas such as the
Saharan desert are thought to play a major role in causing red tides. Some
algal blooms on the Pacific coast have also been linked to occurrences of
large-scale climatic oscillations such as El Niño events. While red tides in the
Gulf of Mexico have been occurring since the time of early explorers such
as Cabeza de Vaca, it is unclear what initiates these blooms and how large a
24
role anthropogenic and natural factors play in their development. It is also
debated whether the apparent increase in frequency and severity of algal
blooms in various parts of the world is in fact a real increase or is due to
increased observation effort and advances in species identification methods.
In particular, the levels of nitrogen, phosphorous, and other nutrients in
coastal waters are increasing due to runoff from fertilizers and animal waste.
Complex global changes in climate also may be affecting red tides. Water
used as ballast in ocean-going ships may be introducing dinoflagellates to
new waters.
EFFECTS OF RED TIDE ON MARINE ENVIRONMENT
Sometimes the dinoflagellates involved with red tides synthesize toxic

chemicals. Genera that are commonly associated with poisonous
red tides are Alexandrium, Dinophysis, and Ptychodiscus. The algal
poisons can accumulate in marine organisms that feed by filtering large
volumes of water, for example, shellfish such as clams, oysters, and mussels.
If these shellfish are collected while they are significantly contaminated by
red-tide toxins, they can poison the human beings who eat them. Marine
toxins can also affect local ecosystems by poisoning animals. Some toxins,
such as that from Ptychodiscus brevis, the organism that causes Florida red
tides, are airborne and can cause throat and nose irritations.
Red tides can cause ecological damage when the algal bloom collapses.
Under some conditions, so much oxygen is consumed to support the
decomposition of dead algal biomass that anoxic conditions develop. This
can cause severe stress or mortality in a wide range of organisms that are
intolerant of low-oxygen conditions. Some red-tide algae can also clog or
irritate the gills of fish and can cause stress or mortality by this physical
effect.
Saxitoxin is a natural but potent neurotoxin that is synthesized by certain

species of marine dinoflagellates. Saxitoxin causes paralytic shellfish
poisoning, a toxic syndrome that affects humans who consume contaminated
shellfish. Other biochemicals synthesized by dinoflagellates are responsible
for diarrhetic shellfish poisoning, another toxic syndrome. Some red tide
dinoflagellates produce reactive forms25 of oxygen—superoxide, hydrogen
peroxide, and hydroxyl radical—which may be responsible for toxic effects.
A few other types of marine algae also produce toxic chemicals. Diatoms in
the genus Nitzchia synthesize domoic acid, a chemical responsible for
amnesic shellfish poisoning in humans.
Paralytic, diarrhetic, and amnesic shellfish poisoning all have the capability
of making large numbers of people ill and can cause death in cases of
extreme exposure or sensitivity. Because of the risks of poisoning associated
with eating marine shellfish, many countries routinely monitor the toxicity of
these foods using various sorts of assays. One commonly used bioassay
involves the injection of laboratory mice with an extract of shellfish. If the
mice develop diagnostic symptoms of poisoning, this is an indication of
contamination of the shellfish by a marine toxin. However, the mouse
bioassay is increasingly being replaced by more accurate methods of
26
determining the presence and concentration of marine toxins using analytical
biochemistry. The analytical methods are generally more reliable and are
much kinder to mice.
Marine animals can also be poisoned by toxic chemicals synthesized during

blooms. For example, in 1991 a bloom in Monterey Bay, California, of
the diatom Nitzchia occidentalis resulted in the accumulation of domoic acid
in filter-feeding zooplankton. These small animals were eaten by small fish,
which also accumulated the toxic chemical and then poisoned fish-eating
cormorants and pelicans that died in large numbers. In addition, some humans
who ate shellfish contaminated by domoic acid were made ill.
In another case, a 1988 bloom of the planktonic alga Chrysochromulina

polylepis in the Baltic Sea caused extensive mortalities of various species of
seaweeds, invertebrates, and fish. A bloom in 1991 of a closely related
species of alga in Norwegian waters killed large numbers of salmon that
were kept in aquaculture cages. In 1996, a red tide killed
149 endangered manatees (Trichechus manatus latirostris) in the coastal
waters of Florida.
Even large whales can be poisoned by algal toxins. In 1985, 14 humpback

whales (Megaptera novaeangliae) died in Cape Cod Bay, Massachusetts,
during a five-week period. This unusual mortality was caused by the whales
eating mackerel (Scomber scombrus) that were contaminated by saxitoxin
synthesized during a dinoflagellate bloom. In one observed death, a whale
was seen to be behaving in an apparently normal fashion, but only 90 minutes
later it had died. The symptoms of the whale deaths were typical of the
mammalian neurotoxicity that is associated with saxitoxin, and fish collected
in the area had large concentrations of this very poisonous chemical in their
bodies.
27

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SBT7010/ Marine Biotech/UNIT1 M.

SCHOOL OF BIO AND CHEMICAL ENGINEERING

MARINE BIOTECHNOLOGY: SBTA 7010

PHYSICAL AND CHEMICAL PROPERTIES OF SEAWATER

PHYSICAL AND CHEMICAL PROPERTIES OF THE OCEAN

Table: 1.1.Constituents of seawater.

Chloride Cl- 55.1

Calcium Ca2+ 1.2

Figure: 1.1 Worldwide surface temperature distribution in (℃)

D.Nutrient Uptake and Gas Exchange

E. Waves and Tides

Wind is a form of energy.

Earthquakes, submarine landslides, and volcanic eruptions also produce waves by

The wave height increases as the water depth decreases.

Thermohaline Circulation: Thermohaline circulation is caused by the vertical movement of water

This phenomenon of “sinking” water layers, or Downwelling, drives thermohaline circulation

An ocean current is any more or less permanent or continuous, directed

THE WORLD OCEAN: CLASSIFICATION OF MARINE ENVIRONMENTS

Spatial classification of the marine environment.

MARINE ENVIRONMENT AND PRIMARY PRODUCTIVITY

Classification of the Marine environment

The shallowest benthic environments (below the neritic zone) are:

* Supralittoral - bottom substrate above high tides (not part of ocean).

* Littoral - bottom substrate within the intertidal zone.

* Sublittoral - bottom substrate below the lowest

within, and ectothermic organisms depend on the temperature of the environment.

P H - average seawater p H is ~ 8.0, and it is maintained within a narrow range by

Planktons represent a community of organisms associated solely on their mode of

silicoflagellates, and extremely very minute varieties callednannoplanktons and

Primary Productivity In oceans, phytoplanktons and seaweed together are known as

MARINE ECOSYSTEM AND BIODIVERSITY

Categories of marine ecosystems

Important functions of estuaries: for living tnings

The mangrove environment contain

Actinomycetes: the mangrove environment is a potent source for the isolation of

There are two types of coral reefs

Coral reef get destructed by

MARINE MICROBIAL DIVERSITY

A great deal of research on the biogeography of marine microorganisms has

The metabolic capabilities of marine microbes can be put to work in any

Innovative approaches in research, education, and training are critical for

INTRODUCTION: MARINE MICROBES

Early microbes introduced molecular oxygen to the atmosphere, an

Early microbes introduced molecular oxygen to the atmosphere, an

An operational definition of marine microbes describes them as species that

MARINE MICROBIAL HABITATS

Marine microbes continue to have a profound influence over the biosphere,

could be described as free-living,” but this is no more or less accurate than

Perhaps the most important factor in defining marine micro-bial habitats is

Microbial habitats in the oceans are influenced by an almost innumerable

HOW THE MARIEN ENVIRONMENT MAY BE DIVIDED INTO

Importantly, marine microbes themselves exert influence on their habitats

In the marine environment and elsewhere, interfaces tend to be hotspots of

CHANGE OVER TIME

Microbial habitats change over many time scales—diel (daily), seasonal,

In the coming years, if observed trends in greenhouse gas emissions

INTERACTIONS BETWEEN SEDIMENT-DWELLING AND

In general, marine microbes in and near sediments interact with and

probably greatest in zones where the sea floor is spreading. However,

MARINE SEDIMENTS, BIOFILMS, AND EARLY LIFE