Virology
Virology
and Prions
Characteristics
Outside of host cells,
viruses are inactive
Lack ribosomes and
enzymes needed for
metabolism
Use the raw materials
and enzymes of the host
cell to be able to
reproduce
EBOLA VIRUS
HIV VIRUS
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Characteristics
Some viruses cause
disease
Smallpox, measles,
mononucleosis, influenza,
colds, warts, AIDS, Ebola
Some viruses may cause
some cancers like leukemia
Virus-free cells are
rare
MEASLES
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Viral History
Discovery of Viruses
Beijerinck (1897)
coined the Latin
name virus meaning
poison
He studied
filtered plant juices
& found they caused
healthy plants to
become sick
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Smallpox
Edward Jenner
(1796) developed a
smallpox vaccine using
milder cowpox viruses
Deadly viruses are
said to be virulent
Smallpox has been
eradicated in the
world today
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Viewing Viruses
Viruses are smaller
than the smallest cell
Measured in
nanometers
Viruses couldnt be
seen until the electron
microscope was
invented in the 20th
century
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Size of Viruses
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Viral
Structure
Characteristics
Non living structures
Noncellular
Contain a protein coat called the
capsid
Have a nucleic acid core containing
DNA or RNA
Capable of reproducing only when
inside a HOST cell
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Characteristics
CAPSID
SPIKES
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Characteristics
Viral capsids
(coats) are made
of individual
protein subunits
Individual
subunits are
called
capsomeres
CAPSOMERES
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1. Nucleic acid
2. Capsomer
3. capsid
Viral Shapes
Viruses come in a variety
of shapes
Some may be helical shape
like the Ebola virus
Some may be polyhedral
shapes like the influenza virus
Others have more complex
shapes like bacteriophages
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Helical Viruses
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Polyhedral Viruses
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Complex Viruses
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Classification of Viruses
*Taxonomic classification of viruses is based on
Classification of Viruses:
a.
b.
c.
d.
Single-stranded
Double-stranded
Double-stranded with regions of singlestrandedness
Sense
Positive sense (+)
Negative sense (-)
Ambisense (+/-)
Bacteriophages
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Phages
Viruses that attack
bacteria are called
bacteriophage or just
phage
T-phages are a
specific class of
bacteriophages with
icosahedral heads,
double-stranded DNA,
and tails
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T-phages
The most commonly
studied T-phages are T4
and T7
They infect E. coli , an
intestinal bacteria
Six small spikes at the
base of a contractile tail
are used to attach to the
host cell
Inject viral DNA into cell
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Escherichia Coli
Bacterium
T-Even Bacteriophages
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Diagram of T-4
Bacteriophage
Head with
20 triangular
surfaces
Capsid
contains DNA
Head & tail
fibers made
of protein
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Retroviruses
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Characteristics of Retroviruses
Contain RNA, not DNA
Family Retroviridae
Contain enzyme called Reverse
Transcriptase
When a retrovirus infects a
cell, it injects its RNA and
reverse transcriptase enzyme
into the cytoplasm of that cell
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ENZYME
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Retroviruses
The enzyme
reverse transcriptase
(or RTase), which
causes synthesis of a
complementary DNA
molecule (cDNA) using
virus RNA as a
template
RTase
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Retroviruses
HIV, the AIDS
virus, is a
retrovirus
Feline Leukemia
Virus is also a
retrovirus
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Viroids
Small, circular
RNA molecules
without a protein
coat
Infect plants
Potato famine in
Ireland
Resemble introns
cut out of
eukaryotic
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Prions
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Prion Diseases
Prions form insoluble
deposits in the brain
Causes neurons to
rapidly degenerate.
Mad cow disease
(bovine spongiform
encephalitis: BSE) is an
example
People in New Guinea
used to suffer from
kuru, which they got
from eating the brains
of their enemies
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Viral Replication
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Viral Attack
Viruses are very specific as to
which species they attack
HOST specific
Humans rarely share viral
diseases with other animals
Eukaryotic viruses usually have
protective envelopes made from
the host cell membrane
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3. Uncoating
4. Transcription
single stranded RNA with (+) polarity can
directly bind to ribosomes to synthesize proteins
5. Translation
6. Genome Replication
(Biosynthesis) of new viral proteins and nucleic
acids
DNA viruses replicates inside the nucleus of the
host cell except for poxvirus
RNA viruses - replicates inside the cytoplasm of
host cell.
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Bacteriophage Replication
Bacteriophage
inject their
nucleic acid
They lyse
(break open) the
bacterial cell
when replication
is finished
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Penetration
host cell
Phage lysozyme opens cell wall,
tail sheath contracts to
force tail core and DNA into
cell
Biosynthesis
Maturation
Release
Bacterial
cell wall
Bacterial
chromosome
Capsid
DNA
Capsid
Sheath
1 Attachment:
Phage
attaches to
host cell.
Tail fiber
Base plate
Pin
Cell wall
Tail
Plasma membrane
2 Penetration:
Phage pnetrates
host cell and
injects its DNA.
Sheath contracted
Tail core
3 Merozoites
released into
bloodsteam from
liver may infect
new red blood cells
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Tail
DNA
4 Maturation:
Viral components
are assembled into
virions.
Capsid
5 Release:
Tail fibers
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Viral Latency
Some viruses have the ability to
become dormant inside the cell
Called latent viruses
They may remain inactive for long
periods of time (years)
Later, they activate to produce
new viruses in response to some
external signal
HIV and Herpes viruses are
examples
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Lysogenic Cycle
Phage DNA
injected into host cell
Viral DNA joins
host DNA forming a
prophage
When an activation
signal occurs, the
phage DNA starts
replicating
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Lysogenic Cycle
Viral DNA (part of
prophage) may stay
inactive in host cell for
long periods of time
Replicated during
each binary fission
Over time, many cells
form containing the
prophages
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Viral Latency
Once a prophage cell is activated, host cell enters the lytic cell
New viruses form a & the cell lyses (bursts)
Virus said to be virulent (deadly)
ACTIVE
STAGE
INACTIVE STAGE
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Latency in Eukaryotes
Some eukaryotic
viruses remain dormant
for many years in the
nervous system tissues
Chickenpox (caused
by the virus Varicella
zoster) is a childhood
infection
It can reappear later
in life as shingles, a
painful itching rash
limited to small areas
of the body
SHINGLES
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Latency in Eukaryotes
Herpes viruses also
become latent in the
nervous system
PASSED AT BIRTH TO
BABY
Virulence
Taxonomy of
Viruses
Viral Taxonomy
Family names end in -viridae
Genus names end in -virus
Viral species: A group of viruses
sharing the same genetic information
and ecological niche (host).
Common names are used for species
Subspecies are designated by a
number
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Viral Taxonomy
Examples
Herpesviridae
Herpesvirus
Human herpes virus 1, HHV 2, HHV 3
Retroviridae
Lentivirus
Human Immunodeficiency Virus 1, HIV 2
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Adenoviruses
Herpesviruses
Herpes simplex (HHV 1 & HHV 2)
Herpes zoster (HHV 3) Varicella zoster
Cytomegalo
Epstein-barr
Hepadna(hepatitis B)
Poxviruses
Variola, cowpox, vaccinia
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Togaviruses
Arbovirus
Polio virus
Flavivirus
Rhinovirus
Rubella virus Hepatitis A virus
Hepatitis C virus
Paramyxoviruses
Measles virus
Mumps virus
Coronaviruses
Rhabdoviruses
Rabies virus
prepared by: avpamplona-RMT
Parvoviruses:
Infection with this virus during the
first trimester of pregnancy can
lead to fetal loss, missed and
spontaneous abortion.
Properties of Parvoviruses:
- single stranded DNA
- large inclusion body
- thermostable at 60 centigrade
- stable at pH 3-9
-most members haemagglutinate
prepared by: avpamplona-RMT
Papovaviruses:
Small, naked icosahedral viruses
Double stranded DNA
Consist of 4 genera:
a. Papillomavirus
b. Polyomavirus
c. Vacuolating Agent(SV40)
d. JC virus
prepared by: avpamplona-RMT
Disease
HPV type
Common warts -2, 7
Plantar warts - 1, 2, 4
Flat cutaneous warts-3, 10
Anogenital warts- 6, 11, 42, 43, 44, 55 and others
Genital cancers- 16, 18, 31, 33, 35, 39, 45, 51
Epidermodysplasia verruciformismore than 15 types
Focal epithelial hyperplasia (oral) -13, 326, 7, 11, 16, 32
Papillomavirus Warts!
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Skin warts
Skin warts
Skin warts
Genital warts
Genital warts
Anal warts
Cervical cancer
B. Polyoma virus
A. Herpesviruses:
Consist of more than 80 viruses
Icosahedral enveloped virions
Double stranded linear DNA genomes
Common herpes human virus
Herpes simplex (HHV 1 & HHV 2)
Herpes zoster (HHV 3)
Varicella zoster
Cytomegalo
Epstein-barr
prepared by: avpamplona-RMT
1. Herpes hominis
(simplex) serotypes 1&2
Epidemiology:
Man is the only known natural host
Most have been infected by the 1, many adults
by type 2.
Spread through close contact
Clinical Features:
1. Primary herpes hominis:
-an acute illness commonly seen in young
children
- characterized by fever small vesicular lesions
of mouth, lips face conjunctiva
Varicella-Zoster Virus:
Immune Response:
Primary infection with varicellazoster virus always results into
long lasting immunity to exogenous
reinfection with varicella but may
also cause endogenous reactivation
of varicella-zoster into herpes
zoster or shingles
Epstein-Barr Virus
Clinical Features
-Man is the natural host
- Infection is most common in young adults
- Incidence of infection is high
-MOT inhalation of infective aerosol during
close personal association
- can cause glandular fever which is also
known as infectious mononucleosis
characterized by fever, lymphadenopathy,
sore throat, malaise and fatigue
Also associated with Burkitts Lymphoma and
nasopharyngeal carcinoma
Epstein-Barr Virus:
Cytomegalovirus
Clinical Features
Usually found in the salivary glands or renal tubules.
Swollen with enlarged nucleus distended by a huge
acidophilic inclusion
Transplacental transmission of virus is significant
-Intrauterine infections may cause death of the fetus
or result in congenital disease which is frequently fatal.
In those who survive, hepatosplenomegaly with jaundice,
mental retardation can be observed.
-Postnatal infections are usually asymptomatic in
infants and children but occasionally with hepatitis,
pneumonitis and acquired hemolytic anemia.
Cytomegalovirus:
Poxviridae:
Causative agent of small pox
Salient characters of poxviruses:
-large, brick shape
-double stranded DNA
-contains 20 antigen
-nucleoprotein antigen
- virions contains many enzymes
( RNA polymerase)
prepared by: avpamplona-RMT
1.
Small
Pox
Clinical Features
Man is the only natural host
Treatment
Methisazone, which is of value prophylactically is also
useful in treating dermal complications following
vaccination. It blocks synthesis of certain viral proteins
thus inhibiting viral replication.
2. Molluscum contagiosum
Infection probably occurs through
minor abrasions and in swimming pools
Clinical Features:
Multiple discrete benign tumors
appear on the skin anywhere except
on the palms and soles; the lesions
last for several months andthen
disappear spontaneously
Adenovirus
COMMON COLD
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Adenoviruses
Properties of the group
1. naked viruses which have an
icosahedral nucleocapsid, contain
double-stranded DNA and replicate
in the nucleus
2. there are more than 40 human
serotypes, some cause tumors in
animals.
Clinical Features:
A. Pharyngo-conjunctival fever
B. Epidemic keratoconjunctivitis
1.associated with serotype 8
2.outbreaks in certain industries are associated with minor
ocular trauma resulting from dusty atmosphere
C. Hemmorhagic cystitis ( children)
Viral Hepatitis
Viral hepatitis are caused by hepatitis
A,B,C,D,or E.
The diagnosis of hepatitis in the laboratory
is dependent on the immunologic detection
of specific antibodies or antigens. This is
useful for designating the stage of
infection and for prognosis
Mode of transmission
Chronic
carriers
Laboratory Test
HAV
Feco-oral
IgM HAV
HBV
Blood;sexual,birth
HBSAg;HbsAb,IgM;HBcA
b
HCV
Blood;sexual
HCV ab
HDV
Blood;sexual
Ab to delta Ag
HEV
Feco-oral
Anti-HEV
RNA
Viruses
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I. ArboViruses: arthropod-borne
viral diseases
Most Arboviruses belong to the following 4
families:
1. togaviridae
2. flaviviridae
3. bunyaviridae
4. reoviridae
Togaviridae
Enveloped ssRNA viruses with +mRNA
genome
Most arboviruses are antigenic groups A or B.
A.
1. Arbovirus encephalitis
2. Yellow Fever
Natural host is the monkey
Vector: aedes mosquito
2 forms of yellow fever: the urban and
jungle
Urban type Yellow fever-man is the main
reservior-transmission cycle is manmosquito-man
Jungle type monkey is the main reservior
* Outstanding feature in cases of yellow
fever is the extend damage to liver and
kidney in severe cases
3. Dengue
The onset of illness is characterized by
fever, chills headache, conjunctivitis,
severe pain in the back, muscle and joints
(break-bone fever)
Fever often falls then rises again within a
week (saddle back curve)
Dengue hemorrhagic fever is a severe
disease with a 10% mortality which occurs
in individuals who have passive maternal
antibody or have recovered from a
previous attack by different dengue
serotype.
4. Rubella virus
Enveloped virus;ssRNA
Replicates in the cytoplasm
Classified as togavirus however it is
not arthropod-borne disease but
droplet spread is the MOT
Rubella:
Also known as German Measles
Acquisition of infection by the mother in the first
trimester of pregnancy is serious and can cause
congenital rubella
Member of genus Rubivirus, family Togaviridae
RNA virus with an envelope
Icosahedral symmetry
Glycoprotein surface projection
Stable at 4centigrade and pH 6-8
Has 4 types of antigen
Clinical feature of
postnatal rubella
There is enlargement of lymph nodes
with conjunctivitis, followed by a fine
macular rash; slight fever may occur
The main risk of this infection is that
may occur in anon-immune woman
during the first trimester of pregnancy
with serious consequences for the
fetus.
Clinical Features of
prenatal Rubella
II. Picornaviridae:
One of the largest families of human
pathogens
Considered as the smallest RNA viruses
Single stranded RNA
Nonenveloped, icosahedral
RNA constitute one-third of virion
Resistant to low pH (pH 3)
Resistant to 70% alcohol
Genus of Picornaviridae:
1.
Enterovirus
Groups:
a. polioviruses
b. coxsakievirus
c. echovirus
d. enterovirus
2. Rhinovirus
1. Enteroviruses
Properties of the group
1. Naked viruses icosahedral nucleocapsid,
contain single-stranded RNA and replicate in the
cytoplasm
2. there are 4 subgroups: polioviruses;
coxsackieviruses;echoviruses and hepa A
Pathology
Most infections are subclinical
Virus multiplies first in the Pharnyx, small
intestines and local lymph nodes
Viremia follows with spread of spread of virus to
the brain and spinal cord
--
a. Polioviruses
Clinical disease:
a. most cases are subclinical
b. aseptic menigitis
c.poliomyelitis an acute disease which
causes flaccid paralysis. The virus
replicates in may cells in the body. The
target cells are the motor neurons in
the CNS where destructions causes
paralysis
Measles virus
Polio Virus
b. Coxsackieviruses
Infection may be in apparent or result in illness
ranging in severity as far as lethal disease. Several
different forms of illness can develop as follows:
1. Herpangina (vesicular Pharyungitis) is the
commonest manifestation of infection by Aserotypes
2. aseptic meningitis can be caused by some Aserotype or any B-serotypes.
3. Myocarditis or pericarditis can occur in infants
from B-serotypes infection and B-serotypes
occasionally cause a myocardiopathy in children or
adults.
c. Echoviruses
Clinical Features:
1. Meningitis is common; permanent
paralysis is very rare
2. skin rashes, pharyngitis and fever may
occur
3. Echoviruses are a cause of a cold-like
disease
4.Gastroenteritis and infantile diarrhea
have been associated with echovirus
infections
III. Orthomyxoviridae:
This is the family of influenza viruses.
3 Genera:
a. Influenza A
b. Influenza B
c. Influenza C
The influenza virus has densely arranged
radial projections over its envelope which
have 2 distinct morphologies:
Haemagglutinin (HA)
and Nueraminidase (NA)
IV. Paramyxoviruses
Enveloped viruses, helica nucleocapsid, contain
single stranded RNA and replicated in the cytoplasm
The measles virus is known to replicate in both
nucleus and cytoplasm
Pleomorphic virion
Helical in shape
Haemagglutinin present in envelope
Single molecule RNA
Transcriptase in virion
Sensitive to lipid solvents
Paramyxoviridae:
GENUS
Paramyxovirus
Morbillivirus
Pneumovirus
VIRUS
Parainfluenza Virus
Mumps Virus
Measles Virus
Respiratory Syncytial virus
1. Parainfluenza Virus
2. Respiratory Syncytial
(RSV) Infection
Infant severe necrotizing
bronchiolitis
RSV is the most common cause of
viral pneumonia in infants
Reinfection occurs commonly, but is
usually mild and confined to the
upper respiratory tract, frequently
resulting in the common cold
syndrome
3. MUMPS
4. Measles
1. cytopathic effect = multinucleated
giant cell with non-specific cytoplasmic
and nuclear inclusions
2. prodromal signs are photopobia,
fever; cough;conjunctivitis and
appearance of Kopliks spots in the
mouth
3. Viremia
4. After 3 days the rash starts on the
head and spreads to chest, trunk and
limbs in the next day or two the rash
disappears slowly
V. Rhabdoviridae:
Rhabdoviruses
Properties of the group
Bullet-shaped enveloped viruses,
which contain single-stranded RNA,
have a helical nucleocapsid
Replicate in the cytoplasm and are
released by budding
1. Rabies
Epidemiology:
Natural host: mammals & bats]
MOT inoculation (bite)
Pathogenesis:
Virus spread along nerves to the CNS
Cause destruction of nerve cells
Treatment
1. Detain animal for observation
2. wound must be thoroughly cleansed
3. Inject rabies immune globulins into the wound and
IM
4. start the vaccine immediately at another site
VI. Rotavirus:
Rotavirus is the causative agent of
infantile gastroenteritis throughout
the world.
The name was derived from Latin
word Rota which means wheel.
The rotaviruses belong to genus
Rotavirus within the family
Rotaviridae.
Clinical Feature:
Diarrhea accompanied occasionally
by vomiting and usually fever
manifests after an incubation
period of 2-3 days and last 4-7
days.
May cause dehaydration and
convulsion in children.
VI. Rhinoviruses
Properties:
Naked icosahedral viruses,ssRNA
Serotypes:
More than 100 serotypes are known
-1. common cause of common cold
(rhinitis)
* Usually remain localized in the nasal
mucosa
VII. Coronaviruses
VIII. Reoviruses
IX Caliciviridae
Norwalk agent
ssRNA virus
Associated with epidemic acute
gastroenteritis in children and
adults
Morphology:
HIV comprises of icosahedral core with
an RNA genome and surrounded by an
envelope
It has 3 antigens:
a. core antigen
b. envelope antigen
c. RT antigen
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Nature of Infection:
Once a person gets infected with HIV,
the virus get integrated into the host
chromosome and the infection persist
Transmission:
Direct contact-sexual intercourse
Blood transfusion
Transplacental
IV drug addicts Via breast milk
Symptoms:
1. Prolonged fatigue not due to physical
activities or other disorders
2. Persistent fever or night sweat.
3. Persistent , unexplained cough
4. Thick whitish hai-rlike coating in the throat
or on the tongue
5. Unexplained bleeding
6. Recent appearance of discolored or purplish
lesions of the mucous membranes or skin that
do not go away and slowly increase in size.
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7. Chronic diarrhea
8. Shortness of breath
9. Unexplained lymphadenopathy
that has persisted over three
months.
10. Unexplained weight loss of ten
or more pounds in less than two
months
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Opportunistic Infections:
1. Cancers Kaposis sarcoma-primary
lymphoma of the brain
2. Pneumonia parasitic infectionPneumocystis carinii
3. candidiasis/histoplasmosis fungal
infection caused by candida albicans &
Histoplasma capsulatum
4. Viral Infections herpes, hepatitis ,CMV
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Incubation period:
Between 1-10 years
Therapy and Prophylaxis:
No vaccine is available
AZT (Azidothymidine)
Slow Viruses
Disease caused by viruses and virus-like
agents belonging to different taxonomic
groups and linked together by the fact
that they are all characterized by
spongiform encephalopathy and long
incubation period
Agents: PRIONS ( small proteinaceous
infectious particles)
1. Subacute Sclerosing
Panecephalitis(SSPE)
3. Creutzfeld-Jakob disease
A rare disease of the CNS which has
been transmitted to chimpanzes by
inoculation of material from brains of
patients
4. Multiple Sclerosis A CNS disease
suspected to be of viral etiology. There
is serological evidence suggesting that
measles virus may be involved.
Vaccines
An attenuated virus is a weakened, less
vigorous virus
Attenuate" refers to procedures that
weaken an agent of disease (heating)
A vaccine against a viral disease can be
made from an attenuated, less virulent
strain of the virus
Attenuated virus is capable of stimulating
an immune response and creating immunity,
but not causing illness
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Cultivation of Viruses:
1.
2.
3.
Laboratory animals
Embryonated eggs
Cell lines:
3 types of cell lines:
a. Primary cell culture- 5-10 division
b. Diploid cell strain-cen undergo much
more cell division thatn primary cell
culture before dying out
c. Continous cell line-immortal cell
lines