Comparative metagenomics of microbial traits within oceanic viral communities (Q34163669)

31 July 2017

title

Comparative metagenomics of microbial traits within oceanic viral communities (English)

1 reference

31 July 2017

1 reference

Itai Sharon

1

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Carmela Giglione

Carmela Giglione

4

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Thierry Meinnel

Thierry Meinnel

5

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Mya Breitbart

Mya Breitbart

8

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Eva-Mari Aro

Eva-Mari Aro

3

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Oded Béjà

10

Oded Béjà

1 reference

31 July 2017

9

Forest Rohwer

1 reference

31 July 2017

2

Natalia Battchikova

1 reference

31 July 2017

Fabian Glaser

6

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31 July 2017

Ron Y Pinter

7

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31 July 2017

publication date

10 February 2011

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31 July 2017

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31 July 2017

volume

5

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31 July 2017

issue

7

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31 July 2017

page(s)

1178-1190

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Genomic analysis of oceanic cyanobacterial myoviruses compared with T4-like myoviruses from diverse hosts and environments

31 July 2017

cites work

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Reconstructing a puzzle: existence of cyanophages containing both photosystem-I and photosystem-II gene suites inferred from oceanic metagenomic datasets

5 July 2018

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Gene network visualization and quantitative synteny analysis of more than 300 marine T4-like phage scaffolds from the GOS metagenome

5 July 2018

1 reference

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FastTree 2--approximately maximum-likelihood trees for large alignments

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146289

Photosystem I gene cassettes are present in marine virus genomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146289

Cotranslational processing mechanisms: towards a dynamic 3D model

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146289

The ribosome as a platform for co-translational processing, folding and targeting of newly synthesized proteins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146289

Typical 2-Cys peroxiredoxins--structures, mechanisms and functions.

5 July 2018

1 reference

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Viruses manipulate the marine environment

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146289

Estimating maximum likelihood phylogenies with PhyML.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146289

Peroxiredoxins: a less studied component of hydrogen peroxide detoxification in photosynthetic organisms

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146289

NCBI Reference Sequences: current status, policy and new initiatives

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146289

Prophages in marine bacteria: dangerous molecular time bombs or the key to survival in the seas?

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146289

Efficient phage-mediated pigment biosynthesis in oceanic cyanobacteria

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146289

Functional metagenomic profiling of nine biomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146289

Fe-S cluster assembly pathways in bacteria.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146289

Microbial ecology of four coral atolls in the Northern Line Islands.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146289

A peptide deformylase-ribosome complex reveals mechanism of nascent chain processing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146289

Cyanobacterial NDH-1 complexes: multiplicity in function and subunit composition

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146289

The Sorcerer II Global Ocean Sampling Expedition: metagenomic characterization of viruses within aquatic microbial samples

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146289

KEGG for linking genomes to life and the environment

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146289

Viral photosynthetic reaction center genes and transcripts in the marine environment

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146289

Horizontal transfer of a eukaryotic plastid-targeted protein gene to cyanobacteria

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146289

The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146289

The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146289

Cyanobacterial NADPH dehydrogenase complexes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146289

NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146289

The marine viromes of four oceanic regions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146289

Structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146289

Photosynthesis genes in marine viruses yield proteins during host infection

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146289

Three Prochlorococcus cyanophage genomes: signature features and ecological interpretations

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146289

Genetic organization of the psbAD region in phages infecting marine Synechococcus strains

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146289

Transfer of photosynthesis genes to and from Prochlorococcus viruses

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146289

Protein N-terminal methionine excision.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146289

MUSCLE: multiple sequence alignment with high accuracy and high throughput

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146289

Genome Sequences of Two Closely Related Vibrio parahaemolyticus Phages, VP16T and VP16C

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146289

Marine ecosystems: bacterial photosynthesis genes in a virus

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146289

5 July 2018

Global phage diversity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146289

Control of protein life-span by N-terminal methionine excision

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146289

Cooperativity in transcriptional control

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146289

Evolutionary relationships among diverse bacteriophages and prophages: all the world's a phage

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146289

Evidence that peptide deformylase and methionyl-tRNA(fMet) formyltransferase are encoded within the same operon in Escherichia coli

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146289

Fructose-bisphosphate aldolases: an evolutionary history

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146289

Isolation and characterization of the four major proteins in the virion of bacteriophage phiX174.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146289

N-terminal sequence of phage lambda repressor

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146289

Primary structure of the λ repressor

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146289

Prevalence of a calcium-based alkaline phosphatase associated with the marine cyanobacterium Prochlorococcus and other ocean bacteria

5 July 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2011.2

Occurrence of phosphate acquisition genes in Prochlorococcus cells from different ocean regions

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2011.2

Two types of functionally distinct NAD(P)H dehydrogenases in Synechocystis sp. strain PCC6803.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2011.2

Expression and functional roles of the two distinct NDH-1 complexes and the carbon acquisition complex NdhD3/NdhF3/CupA/Sll1735 in Synechocystis sp PCC 6803.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2011.2

Coliphage 434 tof Protein: NH2-terminal amino acid sequence and kinetic and equilibrium measurements of DNA binding

21 January 2018

1 reference

12 December 2020

Complete amino acid sequence of an allosteric enzyme, T2 bacteriophage deoxycytidylate deaminase

1 reference

12 December 2020

The C-terminal domain of peptide deformylase is disordered and dispensable for activity

1 reference

12 December 2020

The involvement of NAD(P)H dehydrogenase subunits, NdhD3 and NdhF3, in high-affinity CO2 uptake in Synechococcus sp. PCC7002 gives evidence for multiple NDH-1 complexes with specific roles in cyanobacteria

1 reference

12 December 2020

Identifiers

DOI

10.1038/ISMEJ.2011.2

1 reference

Dimensions Publication ID

31 July 2017

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1 reference

31 July 2017

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